View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8979_low_16 (Length: 309)
Name: NF8979_low_16
Description: NF8979
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8979_low_16 |
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Alignment Details
Target: chr5 (Bit Score: 253; Significance: 1e-141; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 253; E-Value: 1e-141
Query Start/End: Original strand, 19 - 303
Target Start/End: Original strand, 30273221 - 30273505
Alignment:
| Q |
19 |
aatctgcaacttcttttccagccttaagatcaggtgagccctatttgaaattagaagacaagatattaagacaacattgaaggcattcttttgaaaaata |
118 |
Q |
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| T |
30273221 |
aatctgcaacttcttttccagccttaagatcaggtgagccctatttgaaattagaagacaagatattaagacaacattgaaggtattctttttaaaaata |
30273320 |
T |
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| Q |
119 |
aaagaattacataaagtttgcaaaagcgactaaaaaatttgagtgaatatatgcacctcaaggccaacgcagaatgagtgtaattttgatccccattgtt |
218 |
Q |
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| T |
30273321 |
aaagaattacataaagtttgcgaaagtgattcaaaaatttaagtgtatatatgcacctcaaggccaacgcagaatgagtgtaattttgatccccattgtt |
30273420 |
T |
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| Q |
219 |
cagcagctttagtggttgctaggtagcgagaagtgatggatgcaaccaatgatgagtccaaacctccagatagtagaacaccaaa |
303 |
Q |
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| T |
30273421 |
cagcagctttagtggttgctaggtagcgagaagtgatggatgcaaccaatgatgagtccaaacctccagatagtagaacaccaaa |
30273505 |
T |
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Back To:
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Target: chr3 (Bit Score: 49; Significance: 5e-19; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 188 - 300
Target Start/End: Original strand, 25966353 - 25966465
Alignment:
| Q |
188 |
cagaatgagtgtaattttgatccccattgttcagcagctttagtggttgctaggtagcgagaagtgatggatgcaaccaatgatgagtccaaacctccag |
287 |
Q |
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||||||||||||||||||| ||||||||||| ||||||||| ||| || ||||| | || ||||| | |||||||||||| || ||||||||||||| |
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| T |
25966353 |
cagaatgagtgtaattttgctccccattgtttagcagcttttgtgccagccaggtatctagcagtgactgctgcaaccaatgaagaatccaaacctccag |
25966452 |
T |
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| Q |
288 |
atagtagaacacc |
300 |
Q |
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| T |
25966453 |
atagtaaaacacc |
25966465 |
T |
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