View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8979_low_17 (Length: 298)
Name: NF8979_low_17
Description: NF8979
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8979_low_17 |
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Alignment Details
Target: chr4 (Bit Score: 237; Significance: 1e-131; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 1 - 283
Target Start/End: Original strand, 28409428 - 28409706
Alignment:
| Q |
1 |
tactagacaaaattgggaaaggaaaagaaaaaccttttatatataagttgcttatcactaggcaaattcaaaattaatatgtgaatacagcaaaacttac |
100 |
Q |
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| T |
28409428 |
tactagacaaaattgggaaaggaaaagaaaaaccttttatatataagttgcttatcactaggcaaattcaaaattaatatgtgaatacagcaaaacttac |
28409527 |
T |
|
| Q |
101 |
tacaagtgtatatttgatagcattttcaggtattcttttgaaacacaaatggtttttaacattctaaaaaataaagtaatttcaagtttctaaaatataa |
200 |
Q |
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| T |
28409528 |
tgcaagtgtatatttgatagcattttcaggtattcttttgaaacacaaatggtttttaacattctaaaaaataaagtaatttcaagtttctaaaatataa |
28409627 |
T |
|
| Q |
201 |
aatatttcaatttatgtctatatgctatgtgcagaaaagnnnnnnnnnntgaaactaattgatttgagacttacataagggtc |
283 |
Q |
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|||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||| |
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| T |
28409628 |
aatatttcaatttatgtctatatgctatgtgcagaaga----aaaaaaatgaaactaattgatttgagacttacataagggtc |
28409706 |
T |
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