View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8979_low_30 (Length: 209)
Name: NF8979_low_30
Description: NF8979
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8979_low_30 |
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Alignment Details
Target: chr7 (Bit Score: 179; Significance: 9e-97; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 179; E-Value: 9e-97
Query Start/End: Original strand, 15 - 193
Target Start/End: Complemental strand, 19937728 - 19937550
Alignment:
| Q |
15 |
tctccagacattgacttttgcatgtttctgatgacagtgtgagagatgatccgtctgcaaaatcgggaactttgaccatcggcagtttcaaaaaaccatc |
114 |
Q |
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| T |
19937728 |
tctccagacattgacttttgcatgtttctgatgacagtgtgagagatgatccgtctgcaaaatcgggaactttgaccatcggcagtttcaaaaaaccatc |
19937629 |
T |
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| Q |
115 |
agcgttactgtcttcacttgtgttttgatttctgtatctttcgcactgttgaagaggtgtcctcctaacacatccttcg |
193 |
Q |
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| T |
19937628 |
agcgttactgtcttcacttgtgttttgatttctgtatctttcgcactgttgaagaggtgtcctcctaacacatccttcg |
19937550 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 179; E-Value: 9e-97
Query Start/End: Original strand, 15 - 193
Target Start/End: Complemental strand, 19968867 - 19968689
Alignment:
| Q |
15 |
tctccagacattgacttttgcatgtttctgatgacagtgtgagagatgatccgtctgcaaaatcgggaactttgaccatcggcagtttcaaaaaaccatc |
114 |
Q |
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| T |
19968867 |
tctccagacattgacttttgcatgtttctgatgacagtgtgagagatgatccgtctgcaaaatcgggaactttgaccatcggcagtttcaaaaaaccatc |
19968768 |
T |
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| Q |
115 |
agcgttactgtcttcacttgtgttttgatttctgtatctttcgcactgttgaagaggtgtcctcctaacacatccttcg |
193 |
Q |
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| T |
19968767 |
agcgttactgtcttcacttgtgttttgatttctgtatctttcgcactgttgaagaggtgtcctcctaacacatccttcg |
19968689 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 15 - 186
Target Start/End: Original strand, 47601929 - 47602103
Alignment:
| Q |
15 |
tctccagacattgacttttgcatgtttctgatgacagtgtgagagatgatccgtctgcaaaatcgggaactttgaccatcg---gcagtttcaaaaaacc |
111 |
Q |
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| T |
47601929 |
tctcaagacagtgacttctgcatgtttctgatgaaagtgtgagagacgaccgatctgcaaaatcaggaactttgaccatccactgcagtttgtaaaaacc |
47602028 |
T |
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| Q |
112 |
atcagcgttactgtcttcacttgtgttttgatttctgtatctttcgcactgttgaagaggtgtcctcctaacaca |
186 |
Q |
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| T |
47602029 |
atcagctttactgtctacatttatattttgatttctgtatctttcacactgctgcagaggtgtcctcctaacaca |
47602103 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 68 - 114
Target Start/End: Complemental strand, 20302477 - 20302431
Alignment:
| Q |
68 |
tctgcaaaatcgggaactttgaccatcggcagtttcaaaaaaccatc |
114 |
Q |
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| T |
20302477 |
tctgcaaaatcgggaactttaaccatctgcaatttcaaaaacccatc |
20302431 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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