View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8979_low_4 (Length: 598)
Name: NF8979_low_4
Description: NF8979
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8979_low_4 |
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| [»] chr7 (1 HSPs) |
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| [»] chr8 (2 HSPs) |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 509; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 509; E-Value: 0
Query Start/End: Original strand, 13 - 598
Target Start/End: Original strand, 44850474 - 44851049
Alignment:
| Q |
13 |
aacctgtggtccaagtggcaagggaatccaaagaagtttcttaatgtgactca---aatacaaaacaaactgattcattcagcttatacacaatactaat |
109 |
Q |
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| T |
44850474 |
aacctgtggtccaagtggcaagggaatccaaagaagtttcttaatgtgactcatcaaatacaaaacaaactgattcattcagcttatacacaatactaat |
44850573 |
T |
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| Q |
110 |
acaagctgggtcagaaaaatacaaaacaaactgtttcaaatacacagttaatatatatgctaaattgaagccatgtcttgatataaggacaattactcat |
209 |
Q |
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| T |
44850574 |
acaagctgggtcagaaaaatacgaaacaaactgtttcaaatacacagttaatatatatgctaaattgaagccatgtcttgatataaggacaattactcat |
44850673 |
T |
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| Q |
210 |
agaaattggccttagagatgttctaagatcttgcatgtaagacagcattcttataattagaacatttccaactcaagtttatatgacattttgtataaga |
309 |
Q |
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| T |
44850674 |
agaaattggccttagagatgttctaagatcttgcatgtaagacagcattcttataattagaacatttccaactcaagtttatatgacattttatataaga |
44850773 |
T |
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| Q |
310 |
accacatgaaagaatagttcttttataacacggtctatcaagaaatggttttgataaaaaatagtgggtttaattgagtatgataagtaagttaagaact |
409 |
Q |
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| T |
44850774 |
accacatgaaagaatagttcttttataacacggtctatcaataaatggttttgataaaaaatagtgggtttaattgagtatgataagtaagttaagaact |
44850873 |
T |
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| Q |
410 |
-atttggattcttcgccaatgtggaagttctcaactctaaggctacagaagttgaattctatctagatttgaatatgctacagtagcaccctactcttca |
508 |
Q |
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| T |
44850874 |
aatttggatt--------------aagttctcaactctaaggctacagaagttgaattctatctagatttgaatatgctacagtagcaccctactcttca |
44850959 |
T |
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| Q |
509 |
tattgaaagcgtcgtgtcggtgtcagtttcccacaccaacacatgtggttatattcaaaaatttcattttctcaaattaatattggtgtc |
598 |
Q |
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| T |
44850960 |
tattgaaagcgtcgtgtcggtgtcagtttcccacaccaacacatgtggttatattcaaaaatttcattttctcaaattaatattggtgtc |
44851049 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.0000000009; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 549 - 598
Target Start/End: Complemental strand, 16464179 - 16464130
Alignment:
| Q |
549 |
acatgtggttatattcaaaaatttcattttctcaaattaatattggtgtc |
598 |
Q |
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| T |
16464179 |
acatgtgtttacattcaacaatttcattttctcaaattactattggtgtc |
16464130 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 547 - 587
Target Start/End: Complemental strand, 43534975 - 43534935
Alignment:
| Q |
547 |
acacatgtggttatattcaaaaatttcattttctcaaatta |
587 |
Q |
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| T |
43534975 |
acacatgtagttacattcaaatatttcattttctcaaatta |
43534935 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 542 - 587
Target Start/End: Complemental strand, 39828522 - 39828477
Alignment:
| Q |
542 |
caccaacacatgtggttatattcaaaaatttcattttctcaaatta |
587 |
Q |
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| T |
39828522 |
caccaacacatgtggttacattcaattatttcatattctcaaatta |
39828477 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 547 - 584
Target Start/End: Original strand, 30127682 - 30127719
Alignment:
| Q |
547 |
acacatgtggttatattcaaaaatttcattttctcaaa |
584 |
Q |
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| T |
30127682 |
acacatgtggttacattcaataatttcattttctcaaa |
30127719 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 547 - 587
Target Start/End: Complemental strand, 3587971 - 3587931
Alignment:
| Q |
547 |
acacatgtggttatattcaaaaatttcattttctcaaatta |
587 |
Q |
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| T |
3587971 |
acacatgtggttacattcaaatatttcactttctcaaatta |
3587931 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 553 - 598
Target Start/End: Complemental strand, 10735261 - 10735216
Alignment:
| Q |
553 |
gtggttatattcaaaaatttcattttctcaaattaatattggtgtc |
598 |
Q |
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| T |
10735261 |
gtggttgtattcaaatatttcattttcccaaattattattggtgtc |
10735216 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 541 - 598
Target Start/End: Original strand, 11781565 - 11781622
Alignment:
| Q |
541 |
acaccaacacatgtggttatattcaaaaatttcattttctcaaattaatattggtgtc |
598 |
Q |
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| T |
11781565 |
acaccaaagcatgtagttacattcaaatatttcattttctcaaattattactggtgtc |
11781622 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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