View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8979_low_5 (Length: 351)
Name: NF8979_low_5
Description: NF8979
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8979_low_5 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 326; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 3 - 351
Target Start/End: Original strand, 46639969 - 46640320
Alignment:
| Q |
3 |
aacttccaatatttctccaacatacacacat---ttatataaattcgcattcccataacacaaaatcaaacccatccattatcagtaatggaatcctctt |
99 |
Q |
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| T |
46639969 |
aacttccaaaatttctccaacatacacacaccccttatataaattcacattcccataacacaaaatcaaacccatccattatcagtaatggaatcctctt |
46640068 |
T |
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| Q |
100 |
atagtctacaattcttaattaccttcattgtcattctcatatccatcaacccctcatcacaccaatctctaccaccactaaacccaagactcaccaaagc |
199 |
Q |
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| T |
46640069 |
atagtctacaattcttaattaccttcattgtcattctcatatccatcaacccctcatcacaccaatctctaccaccactaaacccaagactcaccaaagc |
46640168 |
T |
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| Q |
200 |
ctacatagcactccaagcatggaaacaaacattcacctcagacccaaaaaacaccaccttaaactggtatggcccaaatgtatgcaactacacaggtatc |
299 |
Q |
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| T |
46640169 |
ctacatagcactccaagcatggaaacaaacattcacctcagacccaaaaaacaccaccttaaactggtatggcccaaatgtatgcaactacacaggtatc |
46640268 |
T |
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| Q |
300 |
ttttgtgcaccgtcactagatgatccttacatcaataccgttgctggtatag |
351 |
Q |
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| T |
46640269 |
ttttgtgcaccgtcactagatgatccttacatcaataccgttgctggtatag |
46640320 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 1 - 351
Target Start/End: Original strand, 46642262 - 46642612
Alignment:
| Q |
1 |
ctaacttccaatatttctccaacatacacacatttatataaattcgcattcccataacacaaaatcaaacccatccattatcagtaatggaatcctctta |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
46642262 |
ctaacttccaatatttctccaacatacacacatttatataaattcacattcccataacacaaaatcaaacccatccattatcggtaatggaatcctctta |
46642361 |
T |
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| Q |
101 |
tagtctacaattcttaattaccttcattgtcattctcatatccatcaacccctcatcacaccaatctctaccaccactaaacccaagactcaccaaagcc |
200 |
Q |
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| T |
46642362 |
tagtccaaaactcttaatttccttcattgtcattctcatatccatcaacccctcatcacaccaatctctaccaccactaaatccaagactcaccaaagcc |
46642461 |
T |
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| Q |
201 |
tacatagcactccaagcatggaaacaaacattcacctcagacccaaaaaacaccaccttaaactggtatggcccaaatgtatgcaactacacaggtatct |
300 |
Q |
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| T |
46642462 |
tacatagcactccaagcatggaaacaaacattcacctcagacccaaaaaacaccactttaaactggtatggcccaaatgtatgcaactacacaggtatca |
46642561 |
T |
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| Q |
301 |
tttgtgcaccgtcactagatgatccttacatcaataccgttgctggtatag |
351 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46642562 |
tttgtgcaccgtcactagatgatccttacatcaataccgttgctggtatag |
46642612 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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