View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8979_low_8 (Length: 351)
Name: NF8979_low_8
Description: NF8979
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8979_low_8 |
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Alignment Details
Target: chr2 (Bit Score: 297; Significance: 1e-167; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 18 - 349
Target Start/End: Complemental strand, 13945419 - 13945085
Alignment:
| Q |
18 |
atagcaagaagtgttgatgctt---gcccaaaaatatttttcaatatttagaatgatggatgcttctccaagtgcagcttggttgtgatcctaatctgct |
114 |
Q |
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| T |
13945419 |
atagcaagaagtgttgatgctttctgcccaaaaatatttttcaatatttagaatgatggatggttctccaagtgtagcttggttgtgatcctaatctgct |
13945320 |
T |
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| Q |
115 |
atgaatgacatcagttgttggatattagttcgccttatatacttgactaataagagattatgtattaacatggagtctccaaacttattttgctagcatt |
214 |
Q |
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| T |
13945319 |
atgaatgacatcagttgttggatattagttcgccttatatacttgactaataagagattatgtattaacatggagtctccaaacttattttgctagcatt |
13945220 |
T |
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| Q |
215 |
gcttcgttgaacatccttaagtttttgaaacttaaacctccctcaaatttaggtttaaagagagtttccttcttggttcaacgaatcttcgtgtggtccc |
314 |
Q |
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| T |
13945219 |
gcttcgttgaacatccttaagtttttgaaacctaaacctccctcaaatttaggtttaaagagagtttccttcttggttcaatgaatcttcctgtgatccc |
13945120 |
T |
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| Q |
315 |
ctttgcttccccaccaaaacttgaatacttcactt |
349 |
Q |
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| T |
13945119 |
ctttgcttccccaccaaaacttgaatacttcactt |
13945085 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 18 - 349
Target Start/End: Complemental strand, 14086608 - 14086274
Alignment:
| Q |
18 |
atagcaagaagtgttgatgctt---gcccaaaaatatttttcaatatttagaatgatggatgcttctccaagtgcagcttggttgtgatcctaatctgct |
114 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||| |
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| T |
14086608 |
atagcaagaagtgttgatgctttctgcccaaaaatatttttcaatatttagaatgatggatggttctccaagtgtagcttggttgtgatcctaatctgct |
14086509 |
T |
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| Q |
115 |
atgaatgacatcagttgttggatattagttcgccttatatacttgactaataagagattatgtattaacatggagtctccaaacttattttgctagcatt |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14086508 |
atgaatgacatcagttgttggatattagttcgccttatatacttgactaataagagattatgtattaacatggagtctccaaacttattttgctagcatt |
14086409 |
T |
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| Q |
215 |
gcttcgttgaacatccttaagtttttgaaacttaaacctccctcaaatttaggtttaaagagagtttccttcttggttcaacgaatcttcgtgtggtccc |
314 |
Q |
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| T |
14086408 |
gcttcgttgaacatccttaagtttttgaaacctaaacctccctcaaatttaggtttaaagagagtttccttcttggttcaatgaatcttcctgtgatccc |
14086309 |
T |
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| Q |
315 |
ctttgcttccccaccaaaacttgaatacttcactt |
349 |
Q |
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| T |
14086308 |
ctttgcttccccaccaaaacttgaatacttcactt |
14086274 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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