View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8980_high_14 (Length: 346)
Name: NF8980_high_14
Description: NF8980
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8980_high_14 |
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Alignment Details
Target: chr4 (Bit Score: 246; Significance: 1e-136; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 6 - 324
Target Start/End: Original strand, 25650408 - 25650725
Alignment:
| Q |
6 |
gagaagcagagaaggaaaagtgttcggatttgcaagatttgtggga-taaaatatgtacgcagtcttgaatatcaacaagaatgtgtggttttgttctta |
104 |
Q |
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| T |
25650408 |
gagaaacaaagaaggaaaagtgttaggatttgcaagatttgtgggggtaaaatatgtacgcagtcttgaatatcaacaagaatgtgtggttttgttctta |
25650507 |
T |
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| Q |
105 |
taagatatgcgtcaatatctcaaaattttcaaaagaagatgatgagtcatgagatgtaaaggtgaagataaaagatggagggaaagaatcaacaatggat |
204 |
Q |
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||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25650508 |
taagatatg-gccaatatctcaaaattttcaaaagaagatgatgagtcatgagatgtaaaggtgaagataaaagatggagggaaagaatcaacaatggat |
25650606 |
T |
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| Q |
205 |
gcaattccaatnnnnnnnacaatgtcttcgttaaggttgatgatgacttggagctaattttagtgcataatattaaataggtatctgagacttatagttc |
304 |
Q |
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|||||| |||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25650607 |
gcaatttcaat-ggggggacaatgtcttcattaaggttgatgatgacttggagctaattttagtgcataatattaaataggtatctgagacttatagttc |
25650705 |
T |
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| Q |
305 |
tgttttctcggtcataatat |
324 |
Q |
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|||||||||| ||||||||| |
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| T |
25650706 |
tgttttctcgatcataatat |
25650725 |
T |
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