View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8980_high_23 (Length: 269)
Name: NF8980_high_23
Description: NF8980
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8980_high_23 |
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Alignment Details
Target: chr3 (Bit Score: 218; Significance: 1e-120; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 15 - 257
Target Start/End: Original strand, 13421392 - 13421634
Alignment:
| Q |
15 |
tgtgtggtctattgatatttgacggcttcaatttcttattgggagatatagtggaggaactgatttgtgtttactgaaagtaaacaaacattcaatgtac |
114 |
Q |
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| T |
13421392 |
tgtgtggtctattgatatttgacggcttcaatttcttattgggagatatagtggaggaactgatttgtgtttactgaaagtaaacaaacattcaatgtac |
13421491 |
T |
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| Q |
115 |
taaaggattcattggtatgaaaatgacataatcatgatatgttagaccaacaactcnnnnnnngaagggatgttgacaacaacttgataatttccccatt |
214 |
Q |
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| T |
13421492 |
taaaggattcattggtatgaaaatgacataatcatgatatgttagaccaacaactctttttttgaagggatgttgacaacaacttgataatttccccatt |
13421591 |
T |
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| Q |
215 |
tttgatggctctaaggtgacctattttcatacaaatgaagatt |
257 |
Q |
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| T |
13421592 |
tttgatggctctaaggtgacctattttcatgcaaatgaagatt |
13421634 |
T |
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