View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8980_high_3 (Length: 556)
Name: NF8980_high_3
Description: NF8980
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8980_high_3 |
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Alignment Details
Target: chr7 (Bit Score: 95; Significance: 3e-46; HSPs: 9)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 383 - 481
Target Start/End: Complemental strand, 17130137 - 17130039
Alignment:
| Q |
383 |
tttgctagtatttaatttattgcatactggttgtgcgactgatagtaatggaggagatgtaactggtctcgatcacttccattgtgcttgtcggagttc |
481 |
Q |
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| T |
17130137 |
tttgctagtatttaatttattgcatactggttgtgcgactgatagtaatggaggagatgtaactggtctcgatcacttccattgtgcttgttggagttc |
17130039 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 209 - 368
Target Start/End: Complemental strand, 19973604 - 19973443
Alignment:
| Q |
209 |
aacatgtaaactcttatttgattgatgacagttatggcatagttgcaatagttctatatgtctg-tttttatattag--tctaacatatgcaatgctaag |
305 |
Q |
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| T |
19973604 |
aacatgtaaactcttatttgattgatgacagctagggcatcgctgcattagttct-tatgtgtgctttttgtattagattctaacatatgcaatgctaag |
19973506 |
T |
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| Q |
306 |
atttaatggttttcaaaggcatgacctttgtttaattttgactctgtcatttagattttcaaa |
368 |
Q |
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| T |
19973505 |
atttaatggttttcaaaggcatgagatctgtttcattttgactctgtcatttagattttcaaa |
19973443 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 397 - 481
Target Start/End: Complemental strand, 17165709 - 17165623
Alignment:
| Q |
397 |
atttattgcatactggtt--gtgcgactgatagtaatggaggagatgtaactggtctcgatcacttccattgtgcttgtcggagttc |
481 |
Q |
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| T |
17165709 |
atttattgcatactggttttgtgtgactaatagtaatggagaagacttaaccagtctcgatcacttccattgtgcttgtcggagttc |
17165623 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 505 - 556
Target Start/End: Complemental strand, 17130015 - 17129964
Alignment:
| Q |
505 |
gatattgatcgtgctcttgctctatatctctcgaccattgttgctttgaaat |
556 |
Q |
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| T |
17130015 |
gatattgatcgtgcttttactctatatctctcgaccattgttgctttgaaat |
17129964 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 209 - 347
Target Start/End: Original strand, 19929491 - 19929630
Alignment:
| Q |
209 |
aacatgtaaactcttatttgattgatgacagttatggcatag-ttgcaatagttctatatgtct-gtttttatattag--tctaacatatgcaatgctaa |
304 |
Q |
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| T |
19929491 |
aacatgtaaactcttatttgattgatgaaagttatgtcatagtttacaatagttct-tatgtctactttttaaattagattct-tcgtatgcaatggtaa |
19929588 |
T |
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| Q |
305 |
gatttaatggttttcaaaggcatgacctttgtttaattttgac |
347 |
Q |
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| T |
19929589 |
gatctgat-gctttcaaaggcatgacctctgtttcattttgac |
19929630 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 209 - 284
Target Start/End: Original strand, 19935768 - 19935845
Alignment:
| Q |
209 |
aacatgtaaactcttatttgattgatgacagttatggcatagttgcaatagttc-tatatgtct-gtttttatattag |
284 |
Q |
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| T |
19935768 |
aacatgtaaactcttgtttgattgatgaaagttaggtcatagttgctatagttcttatatgtctactttttatattag |
19935845 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 209 - 284
Target Start/End: Original strand, 19966907 - 19966984
Alignment:
| Q |
209 |
aacatgtaaactcttatttgattgatgacagttatggcatagttgcaatagttc-tatatgtct-gtttttatattag |
284 |
Q |
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| T |
19966907 |
aacatgtaaactcttgtttgattgatgaaagttaggtcatagttgctatagttcttatatgtctactttttatattag |
19966984 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 209 - 271
Target Start/End: Complemental strand, 47605336 - 47605274
Alignment:
| Q |
209 |
aacatgtaaactcttatttgattgatgacagttatggcatagttgcaatagttc-tatatgtct |
271 |
Q |
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| T |
47605336 |
aacatgtaaactctaattt-atggatgaaagttagggcatagttgcaatagttcttatatgtct |
47605274 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 117 - 173
Target Start/End: Original strand, 19928492 - 19928548
Alignment:
| Q |
117 |
agcattttcagttgcaggacccttgttattcttcatttgcatgggctaacagtgaat |
173 |
Q |
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| T |
19928492 |
agcattttcagttgtaggacccttgtttctcttcatttgaaagggcttaaagtgaat |
19928548 |
T |
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