View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8980_high_5 (Length: 500)
Name: NF8980_high_5
Description: NF8980
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8980_high_5 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 426; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 426; E-Value: 0
Query Start/End: Original strand, 27 - 487
Target Start/End: Original strand, 42473644 - 42474105
Alignment:
| Q |
27 |
gaccaatcaccttggcttatgtatttcccaaaaattggtaattgttatgatttttatgaccctatgcagcgtaagactattcccttgagttgccagagtt |
126 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42473644 |
gaccaatcacctcggcttatgtatttcccaaaaattggtaatttttatgatttttatgaccctatgcagcgtaagactattcccttgagttgccagagtt |
42473743 |
T |
|
| Q |
127 |
ggatggatgtcgtgtttgctatgcaaaagatggttggttattgctaaaccggcatgactggcggagtttggacagagattgcattttttctctctttaat |
226 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||| |||||||||||||||||||| |
|
|
| T |
42473744 |
ggatggatgtcgtgtttgctatgcaaaagatggttggttattgctaaaccggcatgactagcggaggttggacagagatcgcattttttctctctttaat |
42473843 |
T |
|
| Q |
227 |
ccctttactagggatctgatcacgctgccaagctttaaaaggacataccgaaatgctgccttttcttgtgctccaacatcaactggatgtgttatattaa |
326 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42473844 |
ccctttactagggatctgatcacgctgccaagctttaaaaggacataccgaaatgctgccttttcttgtgctccaacatcaactggatgtgttatattaa |
42473943 |
T |
|
| Q |
327 |
ttttcggacgtgttggttctagtgttctagctataagcatgtgttatcctggggcaaaagaatggaccactgttaa-tatgacgcggtactctcctgtag |
425 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||| |
|
|
| T |
42473944 |
ttttcggacgtgttggttctagtgttctagctataagcatgtgttatcctggggcaaaagaatggaccactgttaattattacgcggtactctcctgtag |
42474043 |
T |
|
| Q |
426 |
catcatgtgcgataagcttatcatttcgaacggattattttattgtcttagccacacaggtt |
487 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42474044 |
catcatgtgcaataagcttatcatttcgaacggattattttattgtcttagccacacaggtt |
42474105 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 19 - 487
Target Start/End: Original strand, 42479173 - 42479640
Alignment:
| Q |
19 |
gtgtactcgaccaatcaccttggcttatgtatttcccaaaaattggtaattgttatgatttttatgaccctatgcagcgtaagac-tattcccttgagtt |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||| | ||||||||||| |||||||||||||| |
|
|
| T |
42479173 |
gtgtactcgaccaatcaccttggcttatgtatttcccaaaaaagggtaattgttatgatttctatgaccctgttcagcgtaagacctattcccttgagtt |
42479272 |
T |
|
| Q |
118 |
gccagagttggatggatgtcgtgtttgctatgcaaaagatggttggttattgctaaaccggcatgactggcggagtttggacagagattgcattttttct |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||| |||||| || || |||||| ||| |
|
|
| T |
42479273 |
gccagagttggatggatgtcgtgtttgctatacaaaagatggttggttattgctaaaccggcaggactggcggaggttggacggaaatcacattttctct |
42479372 |
T |
|
| Q |
218 |
ctctttaatccctttactagggatctgatcacgctgccaagctttaaaaggacataccgaaatgctgccttttcttgtgctccaacatcaactggatgtg |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||| | |||||||| | || ||||||||| || ||||||||||||||||||||||||| |
|
|
| T |
42479373 |
ctctttaatccctttactagggatctgatcacgctgccaaaatttgacaggacatatcaaattgctgccttctcatgtgctccaacatcaactggatgtg |
42479472 |
T |
|
| Q |
318 |
ttatattaattttcggacgtgttggttctagtgttctagctataagcatgtgttatcctggggcaaaagaatggaccactgttaa-tatgacgcggtact |
416 |
Q |
| |
|
|||||||||||||| ||||||||||||||||| || |||||||||||| |||||||||||||| ||||||||||||||||||||| |||||||||| ||| |
|
|
| T |
42479473 |
ttatattaattttcagacgtgttggttctagtcttgtagctataagcacgtgttatcctggggaaaaagaatggaccactgttaattatgacgcggaact |
42479572 |
T |
|
| Q |
417 |
ctcctgtagcatcatgtgcgataagcttatcatttcgaacggattattttattgtcttagccacacaggtt |
487 |
Q |
| |
|
||| ||||| |||||||||||||||| || |||| || || |||||||||||||| ||| ||| ||||| |
|
|
| T |
42479573 |
ctcatgtag---catgtgcgataagcttgtcttttctaatgggttattttattgtctgagcgacagaggtt |
42479640 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 28 - 179
Target Start/End: Complemental strand, 26047297 - 26047145
Alignment:
| Q |
28 |
accaatcaccttggcttatgtatttcccaaaaattggtaattgttatgatttttatgaccctatgcagcgtaagac-tattcccttgagttgccagagtt |
126 |
Q |
| |
|
|||||||||| ||| | |||||||| || ||| ||||| | || ||||| || ||||||||| | ||||| ||||| |||||| ||||||| |||||||| |
|
|
| T |
26047297 |
accaatcaccatggttgatgtattttccgaaatttggtcagtggtatgaattctatgaccctgttcagcggaagacctattccattgagtttccagagtt |
26047198 |
T |
|
| Q |
127 |
ggatggatgtcgtgtttgctatgcaaaagatggttggttattgctaaaccggc |
179 |
Q |
| |
|
| |||||| | | ||||| || ||||||||||||||||| ||||| |||||| |
|
|
| T |
26047197 |
gaatggatctagagtttgttacacaaaagatggttggttactgctataccggc |
26047145 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University