View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8980_low_11 (Length: 543)

Name: NF8980_low_11
Description: NF8980
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8980_low_11
NF8980_low_11
[»] chr6 (4 HSPs)
chr6 (281-516)||(35091745-35091980)
chr6 (18-193)||(35092942-35093119)
chr6 (236-283)||(35092889-35092936)
chr6 (409-516)||(19228492-19228599)
[»] chr2 (4 HSPs)
chr2 (280-391)||(9259579-9259689)
chr2 (283-389)||(17139937-17140043)
chr2 (301-383)||(31392295-31392377)
chr2 (409-508)||(39809469-39809568)
[»] chr3 (4 HSPs)
chr3 (283-391)||(1580996-1581105)
chr3 (283-391)||(41404207-41404316)
chr3 (346-391)||(3663805-3663850)
chr3 (409-513)||(41403985-41404089)
[»] chr1 (3 HSPs)
chr1 (301-391)||(3290493-3290583)
chr1 (283-383)||(32984385-32984486)
chr1 (409-513)||(32984613-32984717)
[»] chr7 (6 HSPs)
chr7 (283-391)||(30464521-30464630)
chr7 (283-377)||(8160939-8161032)
chr7 (283-391)||(39827621-39827730)
chr7 (409-516)||(30464295-30464402)
chr7 (411-525)||(8160696-8160810)
chr7 (409-515)||(39827396-39827502)
[»] chr8 (1 HSPs)
chr8 (345-391)||(12735469-12735515)


Alignment Details
Target: chr6 (Bit Score: 183; Significance: 1e-98; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 183; E-Value: 1e-98
Query Start/End: Original strand, 281 - 516
Target Start/End: Complemental strand, 35091980 - 35091745
Alignment:
Q  281 cgaattgctagagagaggggtttgcgaaggttgagttgcaagtcgattcgagtgtggtggtgtgtaccctgcagacaactaaggatggaagtgttgttgg 380  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  35091980 cgaattgctagagagaggggtttgcgaaggttgagttgcacgtcgattcgagtgtggtggtgtgtaccctgcacacaactaaggatggaagtgttgttgg 35091881  T
Q  381 ttgacgtctcaatcnnnnnnntcactgagttgcatgtgtatgagtagtgtccaattagacttaaatctttggtgttaactgatgttattgagataacaac 480  Q
    ||||||||||||||       |||||||||||| |||||||||||||||||||||||| ||||| |||||||||||| |||||||||| |||||||||||    
T  35091880 ttgacgtctcaatcaaaaaaatcactgagttgcgtgtgtatgagtagtgtccaattaggcttaattctttggtgttagctgatgttatcgagataacaac 35091781  T
Q  481 ccctaaaatcatctatgtttagttttctcttttctc 516  Q
     |||||||||||||||||||||||||||||||||||    
T  35091780 tcctaaaatcatctatgtttagttttctcttttctc 35091745  T

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Target: chr6; HSP #2
Raw Score: 128; E-Value: 6e-66
Query Start/End: Original strand, 18 - 193
Target Start/End: Complemental strand, 35093119 - 35092942
Alignment:
Q  18 aattcccagtgtaattaaagaggtgaggttagtatattggagagttgaggagaacaagaggttaatgtaaataatgaatttgagatattgaagtgcactt 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  35093119 aattcccagtgtaattaaagaggtgaggttagtatattggagagttgaggagaacaagagcttaatgtaaataatgaatttgagatattgaagtgcactt 35093020  T
Q  118 gattgaggttgaatcgatacc--nnnnnnnnngtttaagaacatcgccaactaatggtgctcttattaacgtatatat 193  Q
    |||||||||||||||||||||            ||||||||||||||||| |||||||||||||||||||||||||||    
T  35093019 gattgaggttgaatcgataccttttttttttgttttaagaacatcgccaattaatggtgctcttattaacgtatatat 35092942  T

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Target: chr6; HSP #3
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 236 - 283
Target Start/End: Complemental strand, 35092936 - 35092889
Alignment:
Q  236 gcgttctcaatggtttttcgctacccaataatatcataaagtgaccga 283  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||    
T  35092936 gcgttttcaatggtttttcgctacccaataatatcataaagtgaccga 35092889  T

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Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 409 - 516
Target Start/End: Original strand, 19228492 - 19228599
Alignment:
Q  409 gttgcatgtgtatgagtagtgtccaattagacttaaatctttggtgttaactgatgttattgagataacaacccctaaaatcatctatgtttagttttct 508  Q
    ||||| |||||||||| | ||||||| ||| ||||  ||| |||||||| |||||||||| |  ||||  ||||||| | |||||| |||||| ||||||    
T  19228492 gttgcgtgtgtatgagcaatgtccaactaggcttagttctctggtgttagctgatgttatgggaataatgacccctagattcatctctgtttaattttct 19228591  T
Q  509 cttttctc 516  Q
    ||||||||    
T  19228592 cttttctc 19228599  T

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Target: chr2 (Bit Score: 68; Significance: 4e-30; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 280 - 391
Target Start/End: Complemental strand, 9259689 - 9259579
Alignment:
Q  280 ccgaattgctagagagaggggtttgcgaaggttgagttgcaagtcgattcgagtgtggtggtgtgtaccctgcagacaactaaggatggaagtgttgttg 379  Q
    |||||||||||||||||||  ||||||||||||||||| || || |||||||||||||||||| | || ||| |||||||||||||||||||||||||||    
T  9259689 ccgaattgctagagagaggt-tttgcgaaggttgagttacacgttgattcgagtgtggtggtgaggactctgtagacaactaaggatggaagtgttgttg 9259591  T
Q  380 gttgacgtctca 391  Q
    |||| |||||||    
T  9259590 gttggcgtctca 9259579  T

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Target: chr2; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 283 - 389
Target Start/End: Complemental strand, 17140043 - 17139937
Alignment:
Q  283 aattgctagagagaggggtttg-cgaaggttgagttgcaagtcgattcgagtgtggtggtgtgtaccctgcagacaactaaggatggaagtgttgttggt 381  Q
    ||||||||||||||| |||||  ||||||||||||| || || |||||||||||||||||||| || ||||||||||||||||||||||||||| |||||    
T  17140043 aattgctagagagagaggtttttcgaaggttgagttacatgttgattcgagtgtggtggtgtggactctgcagacaactaaggatggaagtgtt-ttggt 17139945  T
Q  382 tgacgtct 389  Q
    || |||||    
T  17139944 tggcgtct 17139937  T

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Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 301 - 383
Target Start/End: Original strand, 31392295 - 31392377
Alignment:
Q  301 tttgcgaaggttgagttgcaagtcgattcgagtgtggtggtgtgtaccctgcagacaactaaggatggaagtgttgttggttg 383  Q
    ||||| |||||||||||||| |  ||||| ||||| |||||| | |||||||||| |||||||||||||||| ||||||||||    
T  31392295 tttgcaaaggttgagttgcacgctgattcaagtgtagtggtgcggaccctgcagataactaaggatggaagtattgttggttg 31392377  T

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Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 409 - 508
Target Start/End: Original strand, 39809469 - 39809568
Alignment:
Q  409 gttgcatgtgtatgagtagtgtccaattagacttaaatctttggtgttaactgatgttattgagataacaacccctaaaatcatctatgtttagttttct 508  Q
    ||||| ||||||||||||||||| | |||| ||||  | |  |||||||||| ||||||| | |||| | ||||||| | |||||| |||||||||||||    
T  39809469 gttgcgtgtgtatgagtagtgtctagttaggcttagttatccggtgttaactaatgttatggggatagcgacccctagagtcatctctgtttagttttct 39809568  T

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Target: chr3 (Bit Score: 66; Significance: 6e-29; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 283 - 391
Target Start/End: Original strand, 1580996 - 1581105
Alignment:
Q  283 aattgctagagagaggggttt-gcgaaggttgagttgcaagtcgattcgagtgtggtggtgtgtaccctgcagacaactaaggatggaagtgttgttggt 381  Q
    ||||||||||||||| ||||| || |||||||||||||| || ||||| ||||||||||||  |||||| ||||||||||||||||||||||||||||||    
T  1580996 aattgctagagagagaggttttgcaaaggttgagttgcacgttgattcaagtgtggtggtgcataccctacagacaactaaggatggaagtgttgttggt 1581095  T
Q  382 tgacgtctca 391  Q
    || |||||||    
T  1581096 tggcgtctca 1581105  T

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Target: chr3; HSP #2
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 283 - 391
Target Start/End: Complemental strand, 41404316 - 41404207
Alignment:
Q  283 aattgctagagagaggggttt-gcgaaggttgagttgcaagtcgattcgagtgtggtggtgtgtaccctgcagacaactaaggatggaagtgttgttggt 381  Q
    ||||| ||||||||| ||||| ||||||||||||||||| || |||| |||||||||||||  ||||||||| |||||| ||||||||||||||||||||    
T  41404316 aattgttagagagagaggttttgcgaaggttgagttgcatgttgatttgagtgtggtggtgcataccctgcaaacaacttaggatggaagtgttgttggt 41404217  T
Q  382 tgacgtctca 391  Q
    || |||||||    
T  41404216 tggcgtctca 41404207  T

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Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 346 - 391
Target Start/End: Complemental strand, 3663850 - 3663805
Alignment:
Q  346 accctgcagacaactaaggatggaagtgttgttggttgacgtctca 391  Q
    |||||||| |||||||| |||||||||||||||||||| |||||||    
T  3663850 accctgcaaacaactaaagatggaagtgttgttggttggcgtctca 3663805  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 409 - 513
Target Start/End: Complemental strand, 41404089 - 41403985
Alignment:
Q  409 gttgcatgtgtatgagtagtgtccaattagacttaaatctttggtgttaactgatgttattgagataacaacccctaaaatcatctatgtttagttttct 508  Q
    ||||||||||||||| |||||||||  ||||||||  ||| |||||||| || |||||||   |||| | || |||| | || ||| ||| |||||||||    
T  41404089 gttgcatgtgtatgactagtgtccagctagacttagttctctggtgttagcttatgttatgtggatagcgactcctagagtcgtctctgtctagttttct 41403990  T
Q  509 ctttt 513  Q
    |||||    
T  41403989 ctttt 41403985  T

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Target: chr1 (Bit Score: 63; Significance: 4e-27; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 301 - 391
Target Start/End: Original strand, 3290493 - 3290583
Alignment:
Q  301 tttgcgaaggttgagttgcaagtcgattcgagtgtggtggtgtgtaccctgcagacaactaaggatggaagtgttgttggttgacgtctca 391  Q
    |||||||||||||||||||| || |||||||||||||| ||| |||||||||||||||  ||||||||||||||||||||||| |||||||    
T  3290493 tttgcgaaggttgagttgcacgttgattcgagtgtggttgtgcgtaccctgcagacaatcaaggatggaagtgttgttggttggcgtctca 3290583  T

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Target: chr1; HSP #2
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 283 - 383
Target Start/End: Original strand, 32984385 - 32984486
Alignment:
Q  283 aattgctagagagaggggttt-gcgaaggttgagttgcaagtcgattcgagtgtggtggtgtgtaccctgcagacaactaaggatggaagtgttgttggt 381  Q
    |||||||||| |||| ||||| || |||||||||||||| || ||||| ||||||||||||  |||||||||||||||||||||||||||||||||||||    
T  32984385 aattgctagacagagaggttttgcaaaggttgagttgcacgttgattcaagtgtggtggtgcataccctgcagacaactaaggatggaagtgttgttggt 32984484  T
Q  382 tg 383  Q
    ||    
T  32984485 tg 32984486  T

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Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 409 - 513
Target Start/End: Original strand, 32984613 - 32984717
Alignment:
Q  409 gttgcatgtgtatgagtagtgtccaattagacttaaatctttggtgttaactgatgttattgagataacaacccctaaaatcatctatgtttagttttct 508  Q
    ||||| |||||||||| | ||||||  ||| ||||  ||| ||||||||  ||||||||| | |||| ||||||||| | |||||| |||||| ||||||    
T  32984613 gttgcgtgtgtatgagcaatgtccagctaggcttagttctctggtgttagttgatgttatggggatagcaacccctagagtcatctctgtttaattttct 32984712  T
Q  509 ctttt 513  Q
    |||||    
T  32984713 ctttt 32984717  T

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Target: chr7 (Bit Score: 58; Significance: 4e-24; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 283 - 391
Target Start/End: Complemental strand, 30464630 - 30464521
Alignment:
Q  283 aattgctagagagaggggttt-gcgaaggttgagttgcaagtcgattcgagtgtggtggtgtgtaccctgcagacaactaaggatggaagtgttgttggt 381  Q
    ||||||||||||||| ||||| || || ||||||||||| ||  |||| ||||||||||||  ||||||||||||||||||| |||||||||||||||||    
T  30464630 aattgctagagagagaggttttgcaaaagttgagttgcacgttaattcaagtgtggtggtgcataccctgcagacaactaagaatggaagtgttgttggt 30464531  T
Q  382 tgacgtctca 391  Q
    || |||||||    
T  30464530 tggcgtctca 30464521  T

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Target: chr7; HSP #2
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 283 - 377
Target Start/End: Complemental strand, 8161032 - 8160939
Alignment:
Q  283 aattgctagagagaggggtttgcgaaggttgagttgcaagtcgattcgagtgtggtggtgtgtaccctgcagacaactaaggatggaagtgttgt 377  Q
    |||| |||||||||||  ||||| || |||||||||||||| ||||| ||||||||||||  |||||||||||||||||||||| ||||||||||    
T  8161032 aatttctagagagaggt-tttgcaaaagttgagttgcaagttgattcaagtgtggtggtgcataccctgcagacaactaaggatagaagtgttgt 8160939  T

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Target: chr7; HSP #3
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 283 - 391
Target Start/End: Complemental strand, 39827730 - 39827621
Alignment:
Q  283 aattgctagagagaggggttt-gcgaaggttgagttgcaagtcgattcgagtgtggtggtgtgtaccctgcagacaactaaggatggaagtgttgttggt 381  Q
    ||||||||||||||| ||||| || || |||||||| || || ||||||||||||||||||  || | |||| ||||||||||||||| |||||| ||||    
T  39827730 aattgctagagagagaggtttagcaaaagttgagtttcacgttgattcgagtgtggtggtgcatagcttgcaaacaactaaggatggaggtgttgctggt 39827631  T
Q  382 tgacgtctca 391  Q
    || |||||||    
T  39827630 tggcgtctca 39827621  T

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Target: chr7; HSP #4
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 409 - 516
Target Start/End: Complemental strand, 30464402 - 30464295
Alignment:
Q  409 gttgcatgtgtatgagtagtgtccaattagacttaaatctttggtgttaactgatgttattgagataacaacccctaaaatcatctatgtttagttttct 508  Q
    ||||| |||||||||||||||||||  ||| ||||  ||| |||||||| |||||||||| | |||| | ||||||||| |||||| |||||  ||||||    
T  30464402 gttgcgtgtgtatgagtagtgtccagctaggcttatttctctggtgttagctgatgttatggggatagcgacccctaaagtcatctttgtttgattttct 30464303  T
Q  509 cttttctc 516  Q
    ||||||||    
T  30464302 cttttctc 30464295  T

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Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 411 - 525
Target Start/End: Complemental strand, 8160810 - 8160696
Alignment:
Q  411 tgcatgtgtatgagtagtgtccaattagacttaaatctttggtgttaactgatgttattgagataacaacccctaaaatcatctatgtttagttttctct 510  Q
    ||||||||| |||| ||||||||  ||  ||||  ||| |||||||| |||||||||| | ||||   ||||||| | |||||| | |||||||||||||    
T  8160810 tgcatgtgtctgagcagtgtccagctaagcttagttctctggtgttagctgatgttatggggatagtgacccctagagtcatctctatttagttttctct 8160711  T
Q  511 tttctcatacttagg 525  Q
    |||||| | ||||||    
T  8160710 tttctcgtgcttagg 8160696  T

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Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 409 - 515
Target Start/End: Complemental strand, 39827502 - 39827396
Alignment:
Q  409 gttgcatgtgtatgagtagtgtccaattagacttaaatctttggtgttaactgatgttattgagataacaacccctaaaatcatctatgtttagttttct 508  Q
    ||||| |||||||||| |||||| || ||||||||  | | || |||||  ||||||||| | |||| | ||||||| | |||||| |||||||||||||    
T  39827502 gttgcgtgtgtatgagcagtgtcaaactagacttagttatctgatgttagttgatgttatagggatagcgacccctagagtcatctctgtttagttttct 39827403  T
Q  509 cttttct 515  Q
     ||||||    
T  39827402 tttttct 39827396  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 345 - 391
Target Start/End: Complemental strand, 12735515 - 12735469
Alignment:
Q  345 taccctgcagacaactaaggatggaagtgttgttggttgacgtctca 391  Q
    |||||| || |||||||| |||| |||||||||||||||||||||||    
T  12735515 taccctacaaacaactaaagatgaaagtgttgttggttgacgtctca 12735469  T

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