View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8980_low_15 (Length: 428)
Name: NF8980_low_15
Description: NF8980
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8980_low_15 |
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Alignment Details
Target: chr2 (Bit Score: 233; Significance: 1e-128; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 233; E-Value: 1e-128
Query Start/End: Original strand, 18 - 273
Target Start/End: Complemental strand, 37809560 - 37809302
Alignment:
| Q |
18 |
caagtaatatataatcttcatttggaaggacatataaactgtctattatatatggctctgtccagaaatttttactcacatatgcatccataaaaggaag |
117 |
Q |
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| T |
37809560 |
caagtaatatagaatcttcatttggaaggacatataaactgtctattatatatggctctgtccagaaattttcactcacatatgcatccataaaaggaag |
37809461 |
T |
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| Q |
118 |
gtc---atagtcatcaaaaagagaagaattttcatatgatattgtagtagtagctgcagtgtccattaatgctatgcaagaggatgcacttgtagatggt |
214 |
Q |
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| T |
37809460 |
gtcgtcatagtcatcaaaaagagaagaattttcatatgatattgtagtagtagctgcagtgtccattaatgatatgcaagaggatgcacttgtagatggt |
37809361 |
T |
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| Q |
215 |
tgtgaagatggtggactcgtaatattgaaatcactgttgttctctaacatttctccaag |
273 |
Q |
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| T |
37809360 |
tgtgaagatggtggactcgtaatattgaaatcactgttgttctctaacatttctccaag |
37809302 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 331 - 419
Target Start/End: Complemental strand, 37809244 - 37809156
Alignment:
| Q |
331 |
cgttccacgtttggtgtttgacttattctttacaagagtcttttttatggtagtgtgccagtagttctttatctcgttatctgtgctcc |
419 |
Q |
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| T |
37809244 |
cgttccacgtttggtgtttgacttattctttacaagagtcttttttatggtggtgtgccagtagttctttatctcgttatctgttctcc |
37809156 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 187 - 241
Target Start/End: Complemental strand, 37793027 - 37792973
Alignment:
| Q |
187 |
tatgcaagaggatgcacttgtagatggttgtgaagatggtggactcgtaatattg |
241 |
Q |
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| T |
37793027 |
tatgcaagagaatccacttgaaaatggttgtgaagatagtggactcgtaatattg |
37792973 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 45 - 87
Target Start/End: Complemental strand, 37792905 - 37792863
Alignment:
| Q |
45 |
ggacatataaactgtctattatatatggctctgtccagaaatt |
87 |
Q |
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| T |
37792905 |
ggacatatgaattgtctatcatatatggctctgtccagaaatt |
37792863 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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