View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8980_low_17 (Length: 422)

Name: NF8980_low_17
Description: NF8980
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8980_low_17
NF8980_low_17
[»] chr4 (5 HSPs)
chr4 (16-313)||(10820287-10820589)
chr4 (198-406)||(44721193-44721401)
chr4 (316-406)||(10820737-10820832)
chr4 (16-105)||(44720952-44721041)
chr4 (332-378)||(10820586-10820632)
[»] chr7 (3 HSPs)
chr7 (198-406)||(43305586-43305794)
chr7 (15-101)||(40353535-40353621)
chr7 (16-105)||(43305946-43306035)
[»] chr5 (3 HSPs)
chr5 (201-406)||(9163016-9163221)
chr5 (54-137)||(9163342-9163427)
chr5 (16-61)||(9163941-9163986)
[»] chr1 (2 HSPs)
chr1 (180-406)||(25345601-25345827)
chr1 (58-139)||(25347384-25347467)
[»] chr6 (3 HSPs)
chr6 (193-405)||(9753287-9753499)
chr6 (248-352)||(12854257-12854361)
chr6 (348-406)||(12866173-12866231)
[»] chr3 (1 HSPs)
chr3 (192-339)||(18347962-18348107)
[»] chr2 (2 HSPs)
chr2 (285-403)||(11906177-11906295)
chr2 (285-403)||(30520035-30520153)
[»] chr8 (2 HSPs)
chr8 (285-354)||(13673421-13673490)
chr8 (58-139)||(24948081-24948164)


Alignment Details
Target: chr4 (Bit Score: 250; Significance: 1e-139; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 16 - 313
Target Start/End: Original strand, 10820287 - 10820589
Alignment:
Q  16 agtttatgcagaatgtgtcatattgcaatataatttctatagccatgcaactattaaggaacaaaggccttatcattttgatcataaaaga--aataatc 113  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||  |||||||    
T  10820287 agtttatgcagaatgtgtcatattgcaatataatttctatagccatgtaactattaaggaacaaaggccttatcattttgatcataaaagacaaataatc 10820386  T
Q  114 agtcagcaaaacaaacaacataaca---caaaatcagcaagcaaatttaacaagtattatgcagaatttctaacacttcgtaatcccctcctaaacatac 210  Q
    ||||| |||||||||||||||||||   ||||||||||||||||||||||||||||||||||| |||||||||||||   ||||||||||||||||||||    
T  10820387 agtcaacaaaacaaacaacataacaacacaaaatcagcaagcaaatttaacaagtattatgcataatttctaacactctataatcccctcctaaacatac 10820486  T
Q  211 atcataacttatgtttctcttcggtgaaaatatccacacaatctctagcagctgaaatcctagaaggaatggggaatctaggctgcacaacactcacgaa 310  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10820487 atcataacttatgtttctcttcggtgaaaatatccacacaatctttagcagctgaaatcctagaaggaatggggaatctaggctgcacaacactcacgaa 10820586  T
Q  311 ata 313  Q
    |||    
T  10820587 ata 10820589  T

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Target: chr4; HSP #2
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 198 - 406
Target Start/End: Original strand, 44721193 - 44721401
Alignment:
Q  198 ctcctaaacatacatcataacttatgtttctcttcggtgaaaatatccacacaatctctagcagctgaaatcctagaaggaatggggaatctaggctgca 297  Q
    ||||||||||||| || ||||||||||||||||| ||| |||||||||   |||||| ||||| ||||||||||||||||||||||||||||||||||||    
T  44721193 ctcctaaacatacttcttaacttatgtttctctttggttaaaatatcccagcaatctatagcaactgaaatcctagaaggaatggggaatctaggctgca 44721292  T
Q  298 caacactcacgaaatagcgaaattccttcccctcaataaactttaaaggcaactcatcaacaattatcatcctagctaacgctttcccacatgcttcaac 397  Q
    |||||||||| |||||||||||||||| |||||||| |||||| ||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||    
T  44721293 caacactcacaaaatagcgaaattcctccccctcaagaaacttaaaaggcaactcatcaacaattatcatcttagctaacgctttcctacatgcttcaac 44721392  T
Q  398 atcaaaatg 406  Q
    |||||||||    
T  44721393 atcaaaatg 44721401  T

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Target: chr4; HSP #3
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 316 - 406
Target Start/End: Original strand, 10820737 - 10820832
Alignment:
Q  316 gaaattccttcccctcaataaactt---taaaggcaactcatcaacaattatcatcc--tagctaacgctttcccacatgcttcaacatcaaaatg 406  Q
    |||||||||||||||| ||||||||   |||||||||||||||||||||||||||||  ||||||||||||||| |||||||||||||||||||||    
T  10820737 gaaattccttcccctcgataaacttatttaaaggcaactcatcaacaattatcatcctatagctaacgctttcctacatgcttcaacatcaaaatg 10820832  T

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Target: chr4; HSP #4
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 16 - 105
Target Start/End: Original strand, 44720952 - 44721041
Alignment:
Q  16 agtttatgcagaatgtgtcatattgcaatataatttctatagccatgcaactattaaggaacaaaggccttatcattttgatcataaaag 105  Q
    |||||||||||||||||||||||| || ||  || |||||||||||||||||||||||||||||||||||||| |||||||||| |||||    
T  44720952 agtttatgcagaatgtgtcatatttcagtaagatctctatagccatgcaactattaaggaacaaaggccttattattttgatcaaaaaag 44721041  T

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Target: chr4; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 332 - 378
Target Start/End: Original strand, 10820586 - 10820632
Alignment:
Q  332 aataaactttaaaggcaactcatcaacaattatcatcctagctaacg 378  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||    
T  10820586 aataaactttaaaggcaactaatcaacaattatcatcctagctaacg 10820632  T

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Target: chr7 (Bit Score: 149; Significance: 1e-78; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 198 - 406
Target Start/End: Complemental strand, 43305794 - 43305586
Alignment:
Q  198 ctcctaaacatacatcataacttatgtttctcttcggtgaaaatatccacacaatctctagcagctgaaatcctagaaggaatggggaatctaggctgca 297  Q
    ||||||||||||| || ||||||||||||||||| ||| |||||||||   |||||| ||||| ||||||||||||||||||||||||||||||||||||    
T  43305794 ctcctaaacatacttcttaacttatgtttctctttggttaaaatatcccagcaatctatagcaactgaaatcctagaaggaatggggaatctaggctgca 43305695  T
Q  298 caacactcacgaaatagcgaaattccttcccctcaataaactttaaaggcaactcatcaacaattatcatcctagctaacgctttcccacatgcttcaac 397  Q
    |||||||||| |||||||||||||||| |||||||| |||||| ||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||    
T  43305694 caacactcacaaaatagcgaaattcctccccctcaagaaacttaaaaggcaactcatcaacaattatcatcttagctaacgctttcctacatgcttcaac 43305595  T
Q  398 atcaaaatg 406  Q
    |||||||||    
T  43305594 atcaaaatg 43305586  T

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Target: chr7; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 15 - 101
Target Start/End: Original strand, 40353535 - 40353621
Alignment:
Q  15 tagtttatgcagaatgtgtcatattgcaatataatttctatagccatgcaactattaaggaacaaaggccttatcattttgatcata 101  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||| | |||| ||||||    
T  40353535 tagtttatgcagaatgtgtcatattgcaatagaatttctatagccatgcaactattaaggaacaaaggtcttaacttttttatcata 40353621  T

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Target: chr7; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 16 - 105
Target Start/End: Complemental strand, 43306035 - 43305946
Alignment:
Q  16 agtttatgcagaatgtgtcatattgcaatataatttctatagccatgcaactattaaggaacaaaggccttatcattttgatcataaaag 105  Q
    |||||||||||||||||||||||| || ||  || |||||||||||||||||||||||||||||||||||||| |||||||||| |||||    
T  43306035 agtttatgcagaatgtgtcatatttcattaagatctctatagccatgcaactattaaggaacaaaggccttattattttgatcaaaaaag 43305946  T

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Target: chr5 (Bit Score: 134; Significance: 1e-69; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 201 - 406
Target Start/End: Complemental strand, 9163221 - 9163016
Alignment:
Q  201 ctaaacatacatcataacttatgtttctcttcggtgaaaatatccacacaatctctagcagctgaaatcctagaaggaatggggaatctaggctgcacaa 300  Q
    |||||||||| || ||||||||||||||||||||| ||||||||    |||||||||||| ||||||||||||||||||||||||||||||||||| |||    
T  9163221 ctaaacatacttcttaacttatgtttctcttcggttaaaatatctcagcaatctctagcaactgaaatcctagaaggaatggggaatctaggctgcccaa 9163122  T
Q  301 cactcacgaaatagcgaaattccttcccctcaataaactttaaaggcaactcatcaacaattatcatcctagctaacgctttcccacatgcttcaacatc 400  Q
    ||||||  ||||||| |||||||| |||||||| |||||| |||||||||||||||||||||||||||||| |||||||||||| |||| ||||||||||    
T  9163121 cactcataaaatagcaaaattcctccccctcaagaaacttaaaaggcaactcatcaacaattatcatcctaactaacgctttcctacatacttcaacatc 9163022  T
Q  401 aaaatg 406  Q
    ||||||    
T  9163021 aaaatg 9163016  T

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Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 54 - 137
Target Start/End: Complemental strand, 9163427 - 9163342
Alignment:
Q  54 atagccatgcaactattaaggaacaaaggccttatcattttgatcataaaag--aaataatcagtcagcaaaacaaacaacataac 137  Q
    ||||||||||||||||||||||||||| ||||||| |||||||||| |||||  ||||| ||| | ||||| |||||||| |||||    
T  9163427 atagccatgcaactattaaggaacaaatgccttattattttgatcaaaaaaggcaaatactcaatgagcaagacaaacaaaataac 9163342  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 16 - 61
Target Start/End: Complemental strand, 9163986 - 9163941
Alignment:
Q  16 agtttatgcagaatgtgtcatattgcaatataatttctatagccat 61  Q
    |||||||||| ||||||||||||| ||||| ||| |||||||||||    
T  9163986 agtttatgcataatgtgtcatatttcaataaaatctctatagccat 9163941  T

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Target: chr1 (Bit Score: 131; Significance: 8e-68; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 131; E-Value: 8e-68
Query Start/End: Original strand, 180 - 406
Target Start/End: Complemental strand, 25345827 - 25345601
Alignment:
Q  180 ctaacacttcgtaatcccctcctaaacatacatcataacttatgtttctcttcggtgaaaatatccacacaatctctagcagctgaaatcctagaaggaa 279  Q
    ||||||||| |||||||||||||||| |||| |  ||||||||||||||| || ||||||||||||  ||||||||||||||||||||||||| ||||||    
T  25345827 ctaacactttgtaatcccctcctaaaaatactttttaacttatgtttctcatcagtgaaaatatcccaacaatctctagcagctgaaatcctataaggaa 25345728  T
Q  280 tggggaatctaggctgcacaacactcacgaaatagcgaaattccttcccctcaataaactttaaaggcaactcatcaacaattatcatcctagctaacgc 379  Q
    | | ||||||||||||||||||||||| |||||||||||   ||| |||||||| |||||| ||||| |||||||||||||||||||| |||||||| ||    
T  25345727 ttgagaatctaggctgcacaacactcatgaaatagcgaagcccctccccctcaacaaacttaaaaggtaactcatcaacaattatcattctagctaatgc 25345628  T
Q  380 tttcccacatgcttcaacatcaaaatg 406  Q
    ||||| |||||||||| ||||||||||    
T  25345627 tttcctacatgcttcagcatcaaaatg 25345601  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 58 - 139
Target Start/End: Complemental strand, 25347467 - 25347384
Alignment:
Q  58 ccatgcaactattaaggaacaaaggccttatcattttgatcataaaag--aaataatcagtcagcaaaacaaacaacataacac 139  Q
    ||||||||| || |||||| |||| |  ||||||||||||||||||||  ||||||  ||||| ||||| |||||| |||||||    
T  25347467 ccatgcaacaataaaggaataaagactatatcattttgatcataaaaggcaaataacaagtcatcaaaagaaacaaaataacac 25347384  T

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Target: chr6 (Bit Score: 121; Significance: 7e-62; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 121; E-Value: 7e-62
Query Start/End: Original strand, 193 - 405
Target Start/End: Complemental strand, 9753499 - 9753287
Alignment:
Q  193 atcccctcctaaacatacatcataacttatgtttctcttcggtgaaaatatccacacaatctctagcagctgaaatcctagaaggaatggggaatctagg 292  Q
    |||||||||||||||||| || ||  ||||||||||| ||||| |||||||||  ||||||| ||||||||| ||||||||||||||| |||||||| ||    
T  9753499 atcccctcctaaacatacttcttagtttatgtttctcatcggtcaaaatatcccaacaatctttagcagctgcaatcctagaaggaattgggaatctcgg 9753400  T
Q  293 ctgcacaacactcacgaaatagcgaaattccttcccctcaataaactttaaaggcaactcatcaacaattatcatcctagctaacgctttcccacatgct 392  Q
    |||||||||||||| |||||||||||||| || |||||| | |||||| ||||| ||||||||||||||||||||||||||||||||||||| |||| |     
T  9753399 ctgcacaacactcatgaaatagcgaaatttctccccctcgacaaacttaaaaggtaactcatcaacaattatcatcctagctaacgctttcctacattcg 9753300  T
Q  393 tcaacatcaaaat 405  Q
     ||||||||||||    
T  9753299 gcaacatcaaaat 9753287  T

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Target: chr6; HSP #2
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 248 - 352
Target Start/End: Original strand, 12854257 - 12854361
Alignment:
Q  248 acaatctctagcagctgaaatcctagaaggaatggggaatctaggctgcacaacactcacgaaatagcgaaattccttcccctcaataaactttaaaggc 347  Q
    ||||||||||||||||||||||||||||||||| |  |||||||| ||||||||||||| ||||||||||||  ||| |||||||| |||||| |||||     
T  12854257 acaatctctagcagctgaaatcctagaaggaattgaaaatctaggttgcacaacactcatgaaatagcgaaacccctccccctcaacaaacttaaaaggt 12854356  T
Q  348 aactc 352  Q
    |||||    
T  12854357 aactc 12854361  T

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Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 348 - 406
Target Start/End: Original strand, 12866173 - 12866231
Alignment:
Q  348 aactcatcaacaattatcatcctagctaacgctttcccacatgcttcaacatcaaaatg 406  Q
    |||||||||||||||||||| |||||||| ||||| | ||||| |||| ||||||||||    
T  12866173 aactcatcaacaattatcattctagctaatgcttttctacatgtttcagcatcaaaatg 12866231  T

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Target: chr3 (Bit Score: 61; Significance: 5e-26; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 192 - 339
Target Start/End: Complemental strand, 18348107 - 18347962
Alignment:
Q  192 aatcccctcctaaacatacatcataacttatgtttctcttcggtgaaaatatccacacaatctctagcagctgaaatcctagaaggaatggggaatctag 291  Q
    ||||||||||||| ||||| |  ||||||||||||||| |  ||||||||||||  ||||||| ||  || |||||||||| ||||||| ||||||||||    
T  18348107 aatcccctcctaatcatactttttaacttatgtttctcattagtgaaaatatcccaacaatctgtataagatgaaatcctaaaaggaattgggaatctag 18348008  T
Q  292 gctgcacaacactcacgaaatagcgaaattccttcccctcaataaact 339  Q
    |||||||||||  || ||||||||||||| ||| |||||||| |||||    
T  18348007 gctgcacaaca--catgaaatagcgaaatccctccccctcaacaaact 18347962  T

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Target: chr2 (Bit Score: 47; Significance: 1e-17; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 285 - 403
Target Start/End: Original strand, 11906177 - 11906295
Alignment:
Q  285 aatctaggctgcacaacactcacgaaatagcgaaattccttcccctcaataaactttaaaggcaactcatcaacaattatcatcctagctaacgctttcc 384  Q
    |||||||| ||||||||||||| |||||| |||||| |||  ||||||| |||||| |||||||||||||| | ||| ||||||||||  |  ||||  |    
T  11906177 aatctaggttgcacaacactcatgaaataccgaaatccctctccctcaacaaacttgaaaggcaactcatctataataatcatcctagaaagagcttctc 11906276  T
Q  385 cacatgcttcaacatcaaa 403  Q
     ||||||||||||||||||    
T  11906277 tacatgcttcaacatcaaa 11906295  T

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Target: chr2; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 285 - 403
Target Start/End: Complemental strand, 30520153 - 30520035
Alignment:
Q  285 aatctaggctgcacaacactcacgaaatagcgaaattccttcccctcaataaactttaaaggcaactcatcaacaattatcatcctagctaacgctttcc 384  Q
    |||||||| ||||||||||||| |||||| |||||| |||  ||||||| |||||| |||||||||||||| | ||| ||||||||||  |  ||||  |    
T  30520153 aatctaggttgcacaacactcatgaaataccgaaatccctctccctcaacaaacttgaaaggcaactcatctataataatcatcctagaaagagcttctc 30520054  T
Q  385 cacatgcttcaacatcaaa 403  Q
     ||||||||||||||||||    
T  30520053 tacatgcttcaacatcaaa 30520035  T

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Target: chr8 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 285 - 354
Target Start/End: Original strand, 13673421 - 13673490
Alignment:
Q  285 aatctaggctgcacaacactcacgaaatagcgaaattccttcccctcaataaactttaaaggcaactcat 354  Q
    |||||||| ||||||||||||| |||||| |||||| |||  ||||||| |||||| |||||||||||||    
T  13673421 aatctaggttgcacaacactcatgaaataccgaaatccctctccctcaacaaacttgaaaggcaactcat 13673490  T

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Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 58 - 139
Target Start/End: Complemental strand, 24948164 - 24948081
Alignment:
Q  58 ccatgcaactattaaggaacaaaggccttatcattttgatcataaaag--aaataatcagtcagcaaaacaaacaacataacac 139  Q
    ||||||||| || |||||||||||||  ||||||||||||||||||||  ||||||  ||||| ||||| |||||| |||||||    
T  24948164 ccatgcaacaataaaggaacaaaggctatatcattttgatcataaaaggcaaataacaagtcatcaaaagaaacaaaataacac 24948081  T

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