View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8980_low_18 (Length: 421)
Name: NF8980_low_18
Description: NF8980
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8980_low_18 |
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Alignment Details
Target: chr3 (Bit Score: 334; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 17 - 411
Target Start/End: Complemental strand, 49513689 - 49513303
Alignment:
| Q |
17 |
atattcaattccaaatgttgacttacatacacaccttcacatagttccagtccatgtagacaacagccagcctatgagtatctttctcaatcactgatac |
116 |
Q |
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| T |
49513689 |
atattaaattccaaatgttgacttacatacacaccttcacatagttccagtccatgtagacaacagccagcctatgagtatctttctcaatcactgatac |
49513590 |
T |
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| Q |
117 |
ctcttcgtgttcctattttataacaacaac---aacactaataatgattaaaaagaagtgatatatttgaaaataccagacgagacatttcgaattttgc |
213 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
49513589 |
ctcttcgtgttcctattttataacaacaacaacaacactaataatgattaaaaagaagtgatagatttgaaaataccagacgagacatttcgaattttgc |
49513490 |
T |
|
| Q |
214 |
tcataacagtacctgcatatcaagtgtgtcagtatcttcatctgtagtagaatttgattcattctctactcctttaacatgctcctccatcaatccctct |
313 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49513489 |
tcataacagtacctgca-----------tcagtatcttcatctgtagtagaatttgattcattctctactcctttaacatgctcctccatcaatccctct |
49513401 |
T |
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| Q |
314 |
tgttcttcttctactttgtagtaatggcgaagaaaatcagatttaaaagtgaggttgttttctacgggcacctctcttgtcgaaaacgagggtctgtg |
411 |
Q |
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| T |
49513400 |
tgttcttcttctactttgtagtaatggcgaagaaaatcagatttaaaagtgaggttgttttctacgggcacctctcttgtcgaaaaagagggtctgtg |
49513303 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 65; Significance: 2e-28; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 46 - 157
Target Start/End: Complemental strand, 27744857 - 27744743
Alignment:
| Q |
46 |
cacaccttcacatagttccagtccatgtagacaacagccagcctatgagtatctttctcaatcactgatacc---tcttcgtgttcctattttataacaa |
142 |
Q |
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|||||||||||||||||||||||||||| ||||||||| ||||||| ||||||||| |||||||| |||||| ||||| || |||||||| ||||||| |
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| T |
27744857 |
cacaccttcacatagttccagtccatgttgacaacagcaagcctataagtatctttatcaatcaccgatacctcgtcttcctgatcctatttaataacaa |
27744758 |
T |
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| Q |
143 |
caacaacactaataa |
157 |
Q |
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||| ||||||||||| |
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| T |
27744757 |
caaaaacactaataa |
27744743 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 248 - 377
Target Start/End: Complemental strand, 27744629 - 27744488
Alignment:
| Q |
248 |
tcttcatctgtagtagaatttgattcattctctactcctttaacatgctcctccatcaatccctcttgt------------tcttcttctactttgtagt |
335 |
Q |
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| T |
27744629 |
tcttcgtctgtagtagaatttgattcattctctgctgctttatcattatcatccatcaattcctcttttccttcttcttcttcttcttctactttgtagt |
27744530 |
T |
|
| Q |
336 |
aatggcgaagaaaatcagatttaaaagtgaggttgttttcta |
377 |
Q |
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| T |
27744529 |
aatggcgaagaaaatcagattttaaagtgaggttgttttcta |
27744488 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 215 - 258
Target Start/End: Complemental strand, 27744686 - 27744643
Alignment:
| Q |
215 |
cataacagtacctgcatatcaagtgtgtcagtatcttcatctgt |
258 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
27744686 |
cataaaagtacctgcatatcaagtgtgtcagtatcttcatctgt |
27744643 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 43 - 122
Target Start/End: Original strand, 38529589 - 38529668
Alignment:
| Q |
43 |
atacacaccttcacatagttccagtccatgtagacaacagccagcctatgagtatctttctcaatcactgatacctcttc |
122 |
Q |
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|||| |||||||||||| ||||||||| | |||||||||| |||||| || |||||||||||| ||| ||||||||| |
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| T |
38529589 |
atacgcaccttcacataccgccagtccatattaacaacagccaacctatgtgtttctttctcaatctctgctacctcttc |
38529668 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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