View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8980_low_19 (Length: 416)
Name: NF8980_low_19
Description: NF8980
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8980_low_19 |
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Alignment Details
Target: chr8 (Bit Score: 292; Significance: 1e-164; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 8 - 397
Target Start/End: Original strand, 937385 - 937777
Alignment:
| Q |
8 |
ataatacttagttgaggcacagactgtcctgttctcttagctaccatagctgctggaggtgccactattccagttatcatcatagaatcatctactttgc |
107 |
Q |
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| T |
937385 |
ataacacttagttgaggcacagactgtcctgttctcttagctaccatagctgctggaggtgccactattccagttatcatcatagaatcatctactttgc |
937484 |
T |
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| Q |
108 |
ttatatttacattcttaatcatgaaatcaatgaaaatatttttcttcttatcttcctcgcttgttttattccaatctctgaaaaatacctcaatttcctt |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
937485 |
ttatatttacattcttaatcatgaaatcaatgaaaatatttttcttcttatcttcctcgcttgttttattccaatctctgaaaaatacctcaatttcctt |
937584 |
T |
|
| Q |
208 |
gtgtgatggtacatcataatgcttaccaggcaaggccatgttaatagtgctagtnnnnnnnnnnnnnnnnnttgtcagaaactataggcaaaattgatat |
307 |
Q |
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| T |
937585 |
gtgtgatggtacatcataatgcttaccaggcaaggccatgttaatagtgctagtaaaaaacaagaaaaaaattgtcagaaactatagacaaaattgatat |
937684 |
T |
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| Q |
308 |
caaatgttgaatatggaaattgttaattata---nnnnnnnnataaacaaatgttatatgtttgttgttatgttagtattttctcattcacaa |
397 |
Q |
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||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
937685 |
caaatgttgaatatggaaattgttaattatatttttttttttataaacaaatgttatatatttgttgttatgttagtattttctcattcacaa |
937777 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 13 - 136
Target Start/End: Original strand, 935615 - 935738
Alignment:
| Q |
13 |
acttagttgaggcacagactgtcctgttctcttagctaccatagctgctggaggtgccactattccagttatcatcatagaatcatctactttgcttata |
112 |
Q |
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| T |
935615 |
acttcgttgaggcacaggttgtcctgttctcgtagctaccatagctgctggaggtgccactattctggtgatcatcatagaatcatctacattactcata |
935714 |
T |
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| Q |
113 |
tttacattcttaatcatgaaatca |
136 |
Q |
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|||||||||||||||||||||||| |
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| T |
935715 |
tttacattcttaatcatgaaatca |
935738 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 37 - 143
Target Start/End: Complemental strand, 7584356 - 7584250
Alignment:
| Q |
37 |
tgttctcttagctaccatagctgctggaggtgccactattccagttatcatcatagaatcatctactttgcttatatttacattcttaatcatgaaatca |
136 |
Q |
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|||||||||||||| ||||||||||| ||||| ||||||||| | ||||||||| ||||||||||||| || ||||||| |||||||| |||||||||| |
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| T |
7584356 |
tgttctcttagctatcatagctgctgtaggtgatactattccattgatcatcatataatcatctactttactaatatttatattcttaaccatgaaatca |
7584257 |
T |
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| Q |
137 |
atgaaaa |
143 |
Q |
| |
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|||||| |
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| T |
7584256 |
gtgaaaa |
7584250 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 194 - 261
Target Start/End: Complemental strand, 7584115 - 7584048
Alignment:
| Q |
194 |
acctcaatttccttgtgtgatggtacatcataatgcttaccaggcaaggccatgttaatagtgctagt |
261 |
Q |
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|||||||||||||||| |||||||||||||| ||||| |||| |||| |||||||| ||||||||||| |
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| T |
7584115 |
acctcaatttccttgtttgatggtacatcatgatgctaaccacgcaatgccatgttgatagtgctagt |
7584048 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 32 - 77
Target Start/End: Complemental strand, 7579370 - 7579324
Alignment:
| Q |
32 |
tgtcctgttctcttagcta-ccatagctgctggaggtgccactattc |
77 |
Q |
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|||| |||||||||||||| ||||||||||||||||||||| ||||| |
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| T |
7579370 |
tgtcttgttctcttagctaaccatagctgctggaggtgccaatattc |
7579324 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 32 - 132
Target Start/End: Complemental strand, 38410408 - 38410308
Alignment:
| Q |
32 |
tgtcctgttctcttagctaccatagctgctggaggtgccactattccagttatcatcatagaatcatctactttgcttatatttacattcttaatcatga |
131 |
Q |
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||||||||||| ||||| || || |||||||| |||||||||||||||| || |||||||| |||||||||||| | | ||| ||||||||| |||||| |
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| T |
38410408 |
tgtcctgttcttttagccactatggctgctggtggtgccactattccagcgattatcatagattcatctactttgttgagattcacattcttattcatga |
38410309 |
T |
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| Q |
132 |
a |
132 |
Q |
| |
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| |
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|
| T |
38410308 |
a |
38410308 |
T |
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