View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8980_low_21 (Length: 404)

Name: NF8980_low_21
Description: NF8980
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8980_low_21
NF8980_low_21
[»] chr2 (20 HSPs)
chr2 (1-388)||(5582512-5582916)
chr2 (226-388)||(5576342-5576505)
chr2 (227-388)||(5586763-5586925)
chr2 (227-388)||(5592999-5593158)
chr2 (294-388)||(5573262-5573357)
chr2 (18-82)||(5573560-5573624)
chr2 (18-82)||(5587091-5587155)
chr2 (128-182)||(12059328-12059381)
chr2 (299-388)||(12059437-12059527)
chr2 (323-388)||(12064832-12064897)
chr2 (124-185)||(5593164-5593224)
chr2 (1-82)||(5593327-5593408)
chr2 (124-184)||(5576562-5576622)
chr2 (18-82)||(5576722-5576786)
chr2 (124-182)||(5573403-5573460)
chr2 (124-182)||(12051903-12051960)
chr2 (323-388)||(5568507-5568572)
chr2 (328-388)||(12052048-12052108)
chr2 (124-185)||(5586931-5586991)
chr2 (87-123)||(5573498-5573534)


Alignment Details
Target: chr2 (Bit Score: 259; Significance: 1e-144; HSPs: 20)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 1 - 388
Target Start/End: Complemental strand, 5582916 - 5582512
Alignment:
Q  1 ttctcttctcttgaaattatttgaaacaatgtgtcaatgggaaatctcaagtgccttgtgtatttatctttggagattctttcaatcttcctacctatgc 100  Q
    ||||||| |||  ||| |||||| | |||| ||||||||||||||| ||||| |||||| | ||||||||||||||||||||||||||||||||||||||    
T  5582916 ttctcttgtctgcaaactatttgcagcaatctgtcaatgggaaatcccaagttccttgtctttttatctttggagattctttcaatcttcctacctatgc 5582817  T
Q  101 aaaatgtaattacaaaccttatgcaacggtcgaactgcaattgacataataagtaacaattctttcaatttatctatattatgaactctgattctcta-- 198  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||      
T  5582816 aaaatgtaattacaaaccttatgcaacggtcgaactgcaattgacataataagtaacaattctttcaatttatctatattatgaactctgattctctatt 5582717  T
Q  199 ----nnnnnnngtttgtgagtaaac-----------aaccagtaagtgtttttcattgttcttttatcttcttatttaagcttttgattcagctcaaact 283  Q
               ||||||||||||||           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  5582716 tttttttttttgtttgtgagtaaactatattgatcgaaccagtaagtgtttttcattgttcttttctcttcttatttaagcttttgattcagctcaaact 5582617  T
Q  284 gtaaagttcttttttattgcagctcagcttcttgttttgagaacttcattccaccatttgcaaacattagtggttcagacatactcaaaggtgtgaacta 383  Q
     ||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||    
T  5582616 ataaagttattttttattgcagctcagcttcttgttttgagaacttcattctaccatttgcaaacattagtggttcagacatactctaaggtgtgaacta 5582517  T
Q  384 tgcat 388  Q
    |||||    
T  5582516 tgcat 5582512  T

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Target: chr2; HSP #2
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 226 - 388
Target Start/End: Complemental strand, 5576505 - 5576342
Alignment:
Q  226 taagtgtttttcattgttcttttatcttcttat-ttaagcttttgattcagctcaaactgtaaagttcttttttattgcagctcagcttcttg-ttttga 323  Q
    ||||||||||||||| ||||||| |||| |||  |||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||    
T  5576505 taagtgtttttcattattcttttctcttgttacattaatcttttgattcagctcaaactgtaaagttcttttt-attgcagctcagcttcttggttttga 5576407  T
Q  324 gaacttcattccaccatttgcaaacattagtggttcagacatactcaaaggtgtgaactatgcat 388  Q
    ||| ||||||||||| ||||||||||||| |||||||||||||||||||||||| ||||||||||    
T  5576406 gaaattcattccaccctttgcaaacattaatggttcagacatactcaaaggtgttaactatgcat 5576342  T

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Target: chr2; HSP #3
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 227 - 388
Target Start/End: Complemental strand, 5586925 - 5586763
Alignment:
Q  227 aagtgtttttcattgttcttttatcttcttat-ttaagcttttgattcagctcaaactgtaaagttcttttttattgcagctcagcttcttgt-tttgag 324  Q
    ||||||||||| |||||||||| |||| |||  |||| |||||||||||||||||||| ||||||| ||||  |||| ||||||||||||||  ||||||    
T  5586925 aagtgtttttctttgttcttttctcttgttaccttaaacttttgattcagctcaaactataaagttattttg-attgtagctcagcttcttggctttgag 5586827  T
Q  325 aacttcattccaccatttgcaaacattagtggttcagacatactcaaaggtgtgaactatgcat 388  Q
    |||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||| ||||    
T  5586826 aacttcattccaccatttgcaaacattaatggctcagacatactcaaaggtgtgaactacgcat 5586763  T

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Target: chr2; HSP #4
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 227 - 388
Target Start/End: Complemental strand, 5593158 - 5592999
Alignment:
Q  227 aagtgtttttcattgttcttttatcttctta-tttaagcttttgattcagctcaaactgtaaagttcttttttattgcagctcagcttctt-gttttgag 324  Q
    ||||||||||| |||||||||| |||| |||  |||| |||||||||||||| ||||| | || |||    |||||||||||||| | ||| ||||||||    
T  5593158 aagtgtttttctttgttcttttctcttgttaccttaaacttttgattcagcttaaactatgaacttc----ttattgcagctcagttacttggttttgag 5593063  T
Q  325 aacttcattccaccatttgcaaacattagtggttcagacatactcaaaggtgtgaactatgcat 388  Q
    || ||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||    
T  5593062 aaattcattccaccatttgcgaacattaatggttcagacatactcaaaggtgtgaactatgcat 5592999  T

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Target: chr2; HSP #5
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 294 - 388
Target Start/End: Complemental strand, 5573357 - 5573262
Alignment:
Q  294 tttttattgcagctcagcttcttgt-tttgagaacttcattccaccatttgcaaacattagtggttcagacatactcaaaggtgtgaactatgcat 388  Q
    |||| ||||||||||| |||||||  |||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  5573357 ttttgattgcagctcaacttcttggatttgagaatttcattccaccatttgcaaacatcagtggttcagacatactcaaaggtgtgaactatgcat 5573262  T

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Target: chr2; HSP #6
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 18 - 82
Target Start/End: Complemental strand, 5573624 - 5573560
Alignment:
Q  18 tatttgaaacaatgtgtcaatgggaaatctcaagtgccttgtgtatttatctttggagattcttt 82  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5573624 tattttaaacaatgtgtcaatgggaaatctcaagtgccttgtgtatttatctttggagattcttt 5573560  T

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Target: chr2; HSP #7
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 18 - 82
Target Start/End: Complemental strand, 5587155 - 5587091
Alignment:
Q  18 tatttgaaacaatgtgtcaatgggaaatctcaagtgccttgtgtatttatctttggagattcttt 82  Q
    |||||| |||||||||||||||||||||| |||||||||||| |||||||||||||||| |||||    
T  5587155 tatttgcaacaatgtgtcaatgggaaatcccaagtgccttgtctatttatctttggagactcttt 5587091  T

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Target: chr2; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 128 - 182
Target Start/End: Original strand, 12059328 - 12059381
Alignment:
Q  128 ggtcgaactgcaattgacataataagtaacaattctttcaatttatctatattat 182  Q
    |||||||||||||||||||||||||||||| |||||||||||||| |||||||||    
T  12059328 ggtcgaactgcaattgacataataagtaac-attctttcaatttaactatattat 12059381  T

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Target: chr2; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 299 - 388
Target Start/End: Original strand, 12059437 - 12059527
Alignment:
Q  299 attgcagctcagcttcttgt-tttgagaacttcattccaccatttgcaaacattagtggttcagacatactcaaaggtgtgaactatgcat 388  Q
    ||||||||||| ||| |||  ||| |||| ||||||||| |||||||||||| || ||||||||||||||||| || ||||||||||||||    
T  12059437 attgcagctcaccttgttggattttagaaattcattccatcatttgcaaacactaatggttcagacatactcagagatgtgaactatgcat 12059527  T

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Target: chr2; HSP #10
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 323 - 388
Target Start/End: Original strand, 12064832 - 12064897
Alignment:
Q  323 agaacttcattccaccatttgcaaacattagtggttcagacatactcaaaggtgtgaactatgcat 388  Q
    |||| ||||||||| |||||||||||| || |||||||||||||||||||| |||||| |||||||    
T  12064832 agaaattcattccatcatttgcaaacactaatggttcagacatactcaaagatgtgaaatatgcat 12064897  T

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Target: chr2; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 124 - 185
Target Start/End: Complemental strand, 5593224 - 5593164
Alignment:
Q  124 caacggtcgaactgcaattgacataataagtaacaattctttcaatttatctatattatgaa 185  Q
    ||||||||||||| |||||||||||||||||||| ||||||| || ||||| ||||||||||    
T  5593224 caacggtcgaactacaattgacataataagtaac-attcttttaacttatccatattatgaa 5593164  T

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Target: chr2; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 82
Target Start/End: Complemental strand, 5593408 - 5593327
Alignment:
Q  1 ttctcttctcttgaaattatttgaaacaatgtgtcaatgggaaatctcaagtgccttgtgtatttatctttggagattcttt 82  Q
    ||||||| |||  ||| |||||| | |||| ||||||||||||||| ||||| |||||| | ||||||||||||||||||||    
T  5593408 ttctcttgtctgcaaactatttgcagcaatctgtcaatgggaaatcccaagttccttgtctttttatctttggagattcttt 5593327  T

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Target: chr2; HSP #13
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 124 - 184
Target Start/End: Complemental strand, 5576622 - 5576562
Alignment:
Q  124 caacggtcgaactgcaattgacataataagtaacaattctttcaatttatctatattatga 184  Q
    ||||||||||||| |||||||||||||||||| || | | ||||| |||||||||||||||    
T  5576622 caacggtcgaacttcaattgacataataagtagcattccgttcaacttatctatattatga 5576562  T

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Target: chr2; HSP #14
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 18 - 82
Target Start/End: Complemental strand, 5576786 - 5576722
Alignment:
Q  18 tatttgaaacaatgtgtcaatgggaaatctcaagtgccttgtgtatttatctttggagattcttt 82  Q
    |||||| |||||| ||||||||| ||||| |||||||| ||| | ||||||||||||||||||||    
T  5576786 tatttgcaacaatttgtcaatggaaaatcccaagtgccatgtctttttatctttggagattcttt 5576722  T

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Target: chr2; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 124 - 182
Target Start/End: Complemental strand, 5573460 - 5573403
Alignment:
Q  124 caacggtcgaactgcaattgacataataagtaacaattctttcaatttatctatattat 182  Q
    ||||||| |||||||||||||||||||||||||| |||||||||| ||  |||||||||    
T  5573460 caacggtagaactgcaattgacataataagtaac-attctttcaacttggctatattat 5573403  T

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Target: chr2; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 124 - 182
Target Start/End: Original strand, 12051903 - 12051960
Alignment:
Q  124 caacggtcgaactgcaattgacataataagtaacaattctttcaatttatctatattat 182  Q
    ||||||||||||||||||| ||||||||||||||  |||||||  ||||||||||||||    
T  12051903 caacggtcgaactgcaattaacataataagtaac-gttctttcggtttatctatattat 12051960  T

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Target: chr2; HSP #17
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 323 - 388
Target Start/End: Complemental strand, 5568572 - 5568507
Alignment:
Q  323 agaacttcattccaccatttgcaaacattagtggttcagacatactcaaaggtgtgaactatgcat 388  Q
    |||| ||||| |||||||||||||||| || ||| |||| |||||| |||||||| ||||||||||    
T  5568572 agaatttcatcccaccatttgcaaacaatattggctcaggcatacttaaaggtgttaactatgcat 5568507  T

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Target: chr2; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 328 - 388
Target Start/End: Original strand, 12052048 - 12052108
Alignment:
Q  328 ttcattccaccatttgcaaacattagtggttcagacatactcaaaggtgtgaactatgcat 388  Q
    ||||||||| |||||||||||| || ||||| ||| || |||||||||||||| |||||||    
T  12052048 ttcattccatcatttgcaaacactaatggtttagatattctcaaaggtgtgaattatgcat 12052108  T

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Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 124 - 185
Target Start/End: Complemental strand, 5586991 - 5586931
Alignment:
Q  124 caacggtcgaactgcaattgacataataagtaacaattctttcaatttatctatattatgaa 185  Q
    ||||||||||||| ||||||||||||| |||||| ||||||| || ||| | ||||||||||    
T  5586991 caacggtcgaacttcaattgacataatcagtaac-attcttttaacttaaccatattatgaa 5586931  T

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Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 87 - 123
Target Start/End: Complemental strand, 5573534 - 5573498
Alignment:
Q  87 cttcctacctatgcaaaatgtaattacaaaccttatg 123  Q
    |||||||||| |||||||| |||||||||||||||||    
T  5573534 cttcctacctctgcaaaatctaattacaaaccttatg 5573498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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