View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8980_low_26 (Length: 368)

Name: NF8980_low_26
Description: NF8980
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8980_low_26
NF8980_low_26
[»] chr6 (10 HSPs)
chr6 (14-353)||(21971421-21971760)
chr6 (14-341)||(20204872-20205199)
chr6 (14-341)||(22098895-22099222)
chr6 (18-353)||(20237453-20237788)
chr6 (18-353)||(22131437-22131772)
chr6 (18-353)||(20085540-20085875)
chr6 (18-113)||(22205288-22205383)
chr6 (18-113)||(24385500-24385595)
chr6 (300-353)||(24385789-24385842)
chr6 (191-238)||(18981290-18981337)
[»] scaffold0074 (2 HSPs)
scaffold0074 (18-113)||(48114-48209)
scaffold0074 (277-353)||(48373-48449)
[»] scaffold0007 (2 HSPs)
scaffold0007 (21-113)||(5644-5736)
scaffold0007 (277-353)||(5900-5976)
[»] scaffold0264 (2 HSPs)
scaffold0264 (18-113)||(15730-15825)
scaffold0264 (277-345)||(15501-15569)


Alignment Details
Target: chr6 (Bit Score: 328; Significance: 0; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 14 - 353
Target Start/End: Complemental strand, 21971760 - 21971421
Alignment:
Q  14 gtgttcaatgtgtcaaaaatgcaacggaacaactatactcaaagtgtcattccttcccagagggtataatttggtacagccattgcctgcttcgctattc 113  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21971760 gtgttcaatgcgtcaaaaatgcaacggaacaactatactcaaagtgtcattccttcccagagggtataatttggtacagccattgcctgcttcgctattc 21971661  T
Q  114 gaataggtatttcattcatagcattgaaacagggcctatgttccgcgatataaatattacaaatggttccatcccggaccaagacttgttcacaaatgca 213  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  21971660 gaataggtatttcattcacagcattgaaacagggcctatgttccgcgatataaatattacaaatggttccatcccggaccaaaacttgttcacaaatgca 21971561  T
Q  214 ttatcaaatcaattatctgaacttgtcaatgttacggggaacaacgaggaaaaatatgcgaaaaattcattaattttgaatgataaacaaactttgtata 313  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21971560 ttatcaaatcaattatctgaacttgtcaatgttacggggaacaacgaggaaaaatatgcgaaaaattcattaattttgaatgataaacaaactttgtata 21971461  T
Q  314 ctcttgaacaatgtacaaaagatttgtctagtcaggattg 353  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  21971460 ctcttgaacaatgtacaaaagatttgtctagtcaggattg 21971421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 180; E-Value: 4e-97
Query Start/End: Original strand, 14 - 341
Target Start/End: Complemental strand, 20205199 - 20204872
Alignment:
Q  14 gtgttcaatgtgtcaaaaatgcaacggaacaactatactcaaagtgtcattccttcccagagggtataatttggtacagccattgcctgcttcgctattc 113  Q
    |||||||||| |||||||| ||||||||| ||||||||||||||||||| | || |||| |||||||||||||||||||||||||| | |||||||||||    
T  20205199 gtgttcaatgcgtcaaaaacgcaacggaagaactatactcaaagtgtcaatactccccacagggtataatttggtacagccattgcttacttcgctattc 20205100  T
Q  114 gaataggtatttcattcatagcattgaaacagggcctatgttccgcgatataaatattacaaatggttccatcccggaccaagacttgttcacaaatgca 213  Q
     |||  ||||||| |  ||  | |||||||| | ||||||||  ||||||||||| |||| |||| | |||||||||||||| |||||||||||||||||    
T  20205099 aaatcagtatttcttcaatcactttgaaacaagacctatgtttagcgatataaatgttaccaatgatcccatcccggaccaaaacttgttcacaaatgca 20205000  T
Q  214 ttatcaaatcaattatctgaacttgtcaatgttacggggaacaacgaggaaaaatatgcgaaaaattcattaattttgaatgataaacaaactttgtata 313  Q
    ||||||||||||||||| |||||||||||||||||||||||||| || ||||||| | ||| ||||||||| || ||||||||||||||||| |||||||    
T  20204999 ttatcaaatcaattatccgaacttgtcaatgttacggggaacaatgatgaaaaatttacgacaaattcattgatattgaatgataaacaaaccttgtata 20204900  T
Q  314 ctcttgaacaatgtacaaaagatttgtc 341  Q
    || |||||||||||||||||||||||||    
T  20204899 ctgttgaacaatgtacaaaagatttgtc 20204872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 180; E-Value: 4e-97
Query Start/End: Original strand, 14 - 341
Target Start/End: Complemental strand, 22099222 - 22098895
Alignment:
Q  14 gtgttcaatgtgtcaaaaatgcaacggaacaactatactcaaagtgtcattccttcccagagggtataatttggtacagccattgcctgcttcgctattc 113  Q
    |||||||||| |||||||| ||||||||| ||||||||||||||||||| | || |||| |||||||||||||||||||||||||| | |||||||||||    
T  22099222 gtgttcaatgcgtcaaaaacgcaacggaagaactatactcaaagtgtcaatactccccacagggtataatttggtacagccattgcttacttcgctattc 22099123  T
Q  114 gaataggtatttcattcatagcattgaaacagggcctatgttccgcgatataaatattacaaatggttccatcccggaccaagacttgttcacaaatgca 213  Q
     |||  ||||||| |  ||  | |||||||| | ||||||||  ||||||||||| |||| |||| | |||||||||||||| |||||||||||||||||    
T  22099122 aaatcagtatttcttcaatcactttgaaacaagacctatgtttagcgatataaatgttaccaatgatcccatcccggaccaaaacttgttcacaaatgca 22099023  T
Q  214 ttatcaaatcaattatctgaacttgtcaatgttacggggaacaacgaggaaaaatatgcgaaaaattcattaattttgaatgataaacaaactttgtata 313  Q
    ||||||||||||||||| |||||||||||||||||||||||||| || ||||||| | ||| ||||||||| || ||||||||||||||||| |||||||    
T  22099022 ttatcaaatcaattatccgaacttgtcaatgttacggggaacaatgatgaaaaatttacgacaaattcattgatattgaatgataaacaaaccttgtata 22098923  T
Q  314 ctcttgaacaatgtacaaaagatttgtc 341  Q
    || |||||||||||||||||||||||||    
T  22098922 ctgttgaacaatgtacaaaagatttgtc 22098895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 18 - 353
Target Start/End: Complemental strand, 20237788 - 20237453
Alignment:
Q  18 tcaatgtgtcaaaaatgcaacggaacaactatactcaaagtgtcattccttcccagagggtataatttggtacagccattgcctgcttcgctattcgaat 117  Q
    ||||||||| ||||||||  |||||||| ||||||||||||||| ||| | |||| |||||||||||||||||||||| ||| |||||||||||||  ||    
T  20237788 tcaatgtgtaaaaaatgctgcggaacaaatatactcaaagtgtctttcttgcccaaagggtataatttggtacagccactgcttgcttcgctattctgat 20237689  T
Q  118 aggtatttcattcatagcattgaaacagggcctatgttccgcgatataaatattacaaatggttccatcccggaccaagacttgttcacaaatgcattat 217  Q
     || | ||| |   || ||| |||||| | |||||||   | ||||||||||| ||  | | ||||||| |  ||||| ||| |||||| | | ||||||    
T  20237688 cggaaattcttctctaacatcgaaacaagtcctatgtatagagatataaatatcaccgaagattccatcacataccaaaactcgttcactagtacattat 20237589  T
Q  218 caaatcaattatctgaacttgtcaatgttacggggaacaacgaggaaaaatatgcgaaaaattcattaattttgaatgataaacaaactttgtatactct 317  Q
    ||||||| |||| | ||||||  ||||  || ||| |||  || ||||  |||  ||  ||||||||||   |||||||||||||||| ||||||| |||    
T  20237588 caaatcagttatatcaacttgcgaatgacacaggggacagtgatgaaatgtatctgactaattcattaaaactgaatgataaacaaaccttgtatagtct 20237489  T
Q  318 tgaacaatgtacaaaagatttgtctagtcaggattg 353  Q
    || ||||||||| | ||||||||||||| |||||||    
T  20237488 tggacaatgtacgagagatttgtctagtgaggattg 20237453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 18 - 353
Target Start/End: Complemental strand, 22131772 - 22131437
Alignment:
Q  18 tcaatgtgtcaaaaatgcaacggaacaactatactcaaagtgtcattccttcccagagggtataatttggtacagccattgcctgcttcgctattcgaat 117  Q
    ||||||||| ||||||||  |||||||| ||||||||||||||| ||| | |||| |||||||||||||||||||||| ||| |||||||||||||  ||    
T  22131772 tcaatgtgtaaaaaatgctgcggaacaaatatactcaaagtgtctttcttgcccaaagggtataatttggtacagccactgcttgcttcgctattctgat 22131673  T
Q  118 aggtatttcattcatagcattgaaacagggcctatgttccgcgatataaatattacaaatggttccatcccggaccaagacttgttcacaaatgcattat 217  Q
     || | ||| |   || ||| |||||| | |||||||   | ||||||||||| ||  | | ||||||| |  ||||| ||| |||||| | | ||||||    
T  22131672 cggaaattcttctctaacatcgaaacaagtcctatgtatagagatataaatatcaccgaagattccatcacataccaaaactcgttcactagtacattat 22131573  T
Q  218 caaatcaattatctgaacttgtcaatgttacggggaacaacgaggaaaaatatgcgaaaaattcattaattttgaatgataaacaaactttgtatactct 317  Q
    ||||||| |||| | ||||||  ||||  || ||| |||  || ||||  |||  ||  ||||||||||   |||||||||||||||| ||||||| |||    
T  22131572 caaatcagttatatcaacttgcgaatgacacaggggacagtgatgaaatgtatctgactaattcattaaaactgaatgataaacaaaccttgtatagtct 22131473  T
Q  318 tgaacaatgtacaaaagatttgtctagtcaggattg 353  Q
    || ||||||||| | ||||||||||||| |||||||    
T  22131472 tggacaatgtacgagagatttgtctagtgaggattg 22131437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 18 - 353
Target Start/End: Complemental strand, 20085875 - 20085540
Alignment:
Q  18 tcaatgtgtcaaaaatgcaacggaacaactatactcaaagtgtcattccttcccagagggtataatttggtacagccattgcctgcttcgctattcgaat 117  Q
    ||||||||| ||||||||||| || ||| ||||||||||||||| ||| |  ||| |||||||||||||||||||||| ||| |||||| ||| ||  ||    
T  20085875 tcaatgtgtaaaaaatgcaactgaccaaatatactcaaagtgtctttcatctccaaagggtataatttggtacagccactgcttgcttcactactctgat 20085776  T
Q  118 aggtatttcattcatagcattgaaacagggcctatgttccgcgatataaatattacaaatggttccatcccggaccaagacttgttcacaaatgcattat 217  Q
     |  | ||| |   || | | |||||| | |||||||   ||||||||||||| || || | ||||||| |  ||||| |||||||||| | | ||||||    
T  20085775 cgaaagttcttctctaacgtcgaaacaagtcctatgtatagcgatataaatatcaccaaagattccatcacaaaccaaaacttgttcactagtacattat 20085676  T
Q  218 caaatcaattatctgaacttgtcaatgttacggggaacaacgaggaaaaatatgcgaaaaattcattaattttgaatgataaacaaactttgtatactct 317  Q
    ||||||| |||||| ||||||  |||| ||| ||| |||  |  |||| ||||  ||  ||||||||||   | ||||||  |||||| |||||||||||    
T  20085675 caaatcagttatctcaacttgcgaatgatacaggggacagtggtgaaagatataagactaattcattaaaactaaatgatgtacaaaccttgtatactct 20085576  T
Q  318 tgaacaatgtacaaaagatttgtctagtcaggattg 353  Q
    || |||||||||  ||||||||||||||||||||||    
T  20085575 tggacaatgtacgcaagatttgtctagtcaggattg 20085540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 18 - 113
Target Start/End: Original strand, 22205288 - 22205383
Alignment:
Q  18 tcaatgtgtcaaaaatgcaacggaacaactatactcaaagtgtcattccttcccagagggtataatttggtacagccattgcctgcttcgctattc 113  Q
    ||||||||| |||||||||||||| ||| ||||||||||||||| ||| |  ||  |||| ||||||||||||||||| ||| || ||||||||||    
T  22205288 tcaatgtgttaaaaatgcaacggatcaaatatactcaaagtgtctttcatgtcctaagggcataatttggtacagccactgcttggttcgctattc 22205383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 18 - 113
Target Start/End: Original strand, 24385500 - 24385595
Alignment:
Q  18 tcaatgtgtcaaaaatgcaacggaacaactatactcaaagtgtcattccttcccagagggtataatttggtacagccattgcctgcttcgctattc 113  Q
    ||||||||| ||||||||||| || ||| ||||||||||||||| ||| |  ||| |||||||| ||||||||||||| ||| |||||| ||||||    
T  24385500 tcaatgtgtaaaaaatgcaactgaccaaatatactcaaagtgtcgttcatctccaaagggtatagtttggtacagccactgcttgcttcactattc 24385595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 300 - 353
Target Start/End: Original strand, 24385789 - 24385842
Alignment:
Q  300 acaaactttgtatactcttgaacaatgtacaaaagatttgtctagtcaggattg 353  Q
    |||||| ||||||||||||| |||||||||  ||||||||||||||||||||||    
T  24385789 acaaaccttgtatactcttggacaatgtacgcaagatttgtctagtcaggattg 24385842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 191 - 238
Target Start/End: Complemental strand, 18981337 - 18981290
Alignment:
Q  191 accaagacttgttcacaaatgcattatcaaatcaattatctgaacttg 238  Q
    ||||| |||||||||| | |||||||||||||||||||||| ||||||    
T  18981337 accaaaacttgttcactagtgcattatcaaatcaattatctcaacttg 18981290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0074 (Bit Score: 48; Significance: 2e-18; HSPs: 2)
Name: scaffold0074
Description:

Target: scaffold0074; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 18 - 113
Target Start/End: Original strand, 48114 - 48209
Alignment:
Q  18 tcaatgtgtcaaaaatgcaacggaacaactatactcaaagtgtcattccttcccagagggtataatttggtacagccattgcctgcttcgctattc 113  Q
    ||||||||| ||||| |||||||| ||| ||||||||||||||| ||| |  ||| |||||||||||||||||||||| ||| || ||||||||||    
T  48114 tcaatgtgtgaaaaaagcaacggaccaaatatactcaaagtgtctttcatctccaaagggtataatttggtacagccactgcttggttcgctattc 48209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0074; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 277 - 353
Target Start/End: Original strand, 48373 - 48449
Alignment:
Q  277 aattcattaattttgaatgataaacaaactttgtatactcttgaacaatgtacaaaagatttgtctagtcaggattg 353  Q
    ||||||||||   |||||||||||||||| ||||||| ||||| ||||||||| | |||||||||||||||||||||    
T  48373 aattcattaaaactgaatgataaacaaaccttgtatagtcttgcacaatgtacgagagatttgtctagtcaggattg 48449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 46; Significance: 4e-17; HSPs: 2)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 21 - 113
Target Start/End: Original strand, 5644 - 5736
Alignment:
Q  21 atgtgtcaaaaatgcaacggaacaactatactcaaagtgtcattc-cttcccagagggtataatttggtacagccattgcctgcttcgctattc 113  Q
    |||||| |||||||||||||| ||| ||||||||||||||| ||| | ||||| |||||||||||||||||||||| ||| || ||||||||||    
T  5644 atgtgtgaaaaatgcaacggatcaaatatactcaaagtgtctttcacgtccca-agggtataatttggtacagccactgcttggttcgctattc 5736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 277 - 353
Target Start/End: Original strand, 5900 - 5976
Alignment:
Q  277 aattcattaattttgaatgataaacaaactttgtatactcttgaacaatgtacaaaagatttgtctagtcaggattg 353  Q
    ||||||||||   ||||||||  |||||| ||||||| ||||| |||||||||   ||||||||||||| |||||||    
T  5900 aattcattaaaactgaatgatgtacaaaccttgtatagtcttggacaatgtacgcgagatttgtctagtgaggattg 5976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0264 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: scaffold0264
Description:

Target: scaffold0264; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 18 - 113
Target Start/End: Complemental strand, 15825 - 15730
Alignment:
Q  18 tcaatgtgtcaaaaatgcaacggaacaactatactcaaagtgtcattccttcccagagggtataatttggtacagccattgcctgcttcgctattc 113  Q
    ||||||||| |||||||||||||| ||| ||||||||||||||| ||  |  ||  |||| ||||||||||||||||| ||| || ||||||||||    
T  15825 tcaatgtgttaaaaatgcaacggatcaaatatactcaaagtgtctttgatgtcctaagggcataatttggtacagccactgcttggttcgctattc 15730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0264; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 277 - 345
Target Start/End: Complemental strand, 15569 - 15501
Alignment:
Q  277 aattcattaattttgaatgataaacaaactttgtatactcttgaacaatgtacaaaagatttgtctagt 345  Q
    ||||||||||   |||||||||||||||| ||||||| ||||| |||||||||   |||||||||||||    
T  15569 aattcattaaaactgaatgataaacaaaccttgtatagtcttggacaatgtacgcgagatttgtctagt 15501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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