View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8980_low_28 (Length: 368)
Name: NF8980_low_28
Description: NF8980
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8980_low_28 |
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Alignment Details
Target: chr8 (Bit Score: 134; Significance: 1e-69; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 213 - 350
Target Start/End: Original strand, 39370424 - 39370561
Alignment:
| Q |
213 |
aaaattgcaaaccccctcaagatacacaattatccaagctcccaatgcaccaaaatagactagagttgttgtggtgaagaaaactcagtatgactccata |
312 |
Q |
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| T |
39370424 |
aaaattgcaaaccccatcaagatacacaattatccaagctcccaatgcaccaaaatagactagagttgttgtggtgaagaaaactcagtatgactccata |
39370523 |
T |
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| Q |
313 |
tttatattaactctctacttttgtttcttccaactatt |
350 |
Q |
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| T |
39370524 |
tttatattaactctctacttttgtttcttccaactatt |
39370561 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 13 - 188
Target Start/End: Original strand, 39370264 - 39370437
Alignment:
| Q |
13 |
tggacatcattataccccactcccccacctgaactatcaagccaacttttttctcctttctttggtgaagaattgtttgtaaagcaaccagagaaaatct |
112 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
39370264 |
tggacctcattataccccactcccccacctgaactatcaagccaacttttttctcctttctttggtgaagaattgtttgtaaagcaacctgagaaaatct |
39370363 |
T |
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| Q |
113 |
ccacacaaggggnnnnnnnnnctcaataaaaatttattactcaacctgaatgatataagaacaaaattgcaaaccc |
188 |
Q |
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| T |
39370364 |
tcacacaaggg--aaaaaaaactcaataaaaatttattactcaacctgaatgatataagaacaaaattgcaaaccc |
39370437 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 174 - 223
Target Start/End: Original strand, 32496719 - 32496767
Alignment:
| Q |
174 |
caaaattgcaaaccctctcaattacaatttgtgcacagaaaaattgcaaa |
223 |
Q |
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| T |
32496719 |
caaaattgcaaacc-tctcaattataatttttgcacagagaaattgcaaa |
32496767 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 213 - 308
Target Start/End: Original strand, 3511669 - 3511762
Alignment:
| Q |
213 |
aaaattgcaaaccccctcaagatacacaattatccaagctcccaatgcaccaaaatagactagagttgttgtggtgaagaaaactcagtatgactc |
308 |
Q |
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|||||||||||| | ||||||| |||||| || |||| | |||||| |||| ||| ||||||||||||||||||||| ||||||||| ||| |||| |
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| T |
3511669 |
aaaattgcaaactctctcaagacacacaactacccaatc-cccaatacacccaaa-agactagagttgttgtggtgatgaaaactcaatataactc |
3511762 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 166 - 226
Target Start/End: Original strand, 37883016 - 37883075
Alignment:
| Q |
166 |
tataagaacaaaattgcaaaccctctcaattacaatttgtgcacagaaaaattgcaaaccc |
226 |
Q |
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| T |
37883016 |
tataaggacaaaattgcaaacc-tctcgattacaatttttgcatggaaaaattgcaaaccc |
37883075 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 175 - 295
Target Start/End: Original strand, 9687435 - 9687552
Alignment:
| Q |
175 |
aaaattgcaaaccctctcaattacaatttgtgcacagaaaaattgcaaaccccctcaagatacacaattatccaagctcccaatgcaccaaaatagacta |
274 |
Q |
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||||||||||||||||||||||| || | |||| | |||||||||||||| ||||||| |||||| ||| ||||| || ||| ||| ||| |||||| |
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| T |
9687435 |
aaaattgcaaaccctctcaattaatatctttgca-tggaaaattgcaaaccctctcaagacacacaactattcaagc-cctaatatacccaaa-agacta |
9687531 |
T |
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| Q |
275 |
gagttgttgtggtgaagaaaa |
295 |
Q |
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||| ||||||||| ||||||| |
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| T |
9687532 |
gagctgttgtggtaaagaaaa |
9687552 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 177 - 225
Target Start/End: Original strand, 27048996 - 27049043
Alignment:
| Q |
177 |
aattgcaaaccctctcaattacaatttgtgcacagaaaaattgcaaacc |
225 |
Q |
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| T |
27048996 |
aattgcaaacc-tctcaattgcaatttttgcacggaaaaattgcaaacc |
27049043 |
T |
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