View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8980_low_3 (Length: 783)
Name: NF8980_low_3
Description: NF8980
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8980_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 419; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 419; E-Value: 0
Query Start/End: Original strand, 16 - 438
Target Start/End: Original strand, 31852519 - 31852941
Alignment:
| Q |
16 |
caaaattattatatttgattatagaagggtatactctaccttgaatgctgcttggagcactttggagctgaatgctgtgaggactgattctgggtctcgc |
115 |
Q |
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| T |
31852519 |
caaaattattatatttgattatagaagggtatactctaccttgaatgctgcttggagcactttggagctgaatgctgtgaggactgattctgggtctcgc |
31852618 |
T |
|
| Q |
116 |
cctgcaggcccaaaaaatgcctgcaccaatacatgtatgtcacacatttaatcatgtcccttaagattgctagtgtcacatgtaataatagatcaaataa |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31852619 |
cctgcaggcccaaaaaatgcctgcaccaatacatgtatgtcacacatttaatcatgtcccttaagattgctagtgtcacatgtaataatagatcaaataa |
31852718 |
T |
|
| Q |
216 |
tgttgttagaagttgtaacctcaagatttactggagcagaggcagaggaaggtggcatgtgcaatgctgccacaaaaagcttctcattctcatctctatt |
315 |
Q |
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| T |
31852719 |
tgttgttagaagttgtaacctcaagatttactggagcagaggcagaggaaggtggcatgtgcaatgctgcaacaaaaagcttctcattctcatctctatt |
31852818 |
T |
|
| Q |
316 |
aaccaagtacataggtgttcctgcaggtaccctcataatgtcaccagcttcaaggttaaatctctcggttttatcttccatcaccaacccaattattcct |
415 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31852819 |
aaccaagtacataggtgttcctgcaggtaccctcataatgtcaccagcttcaaggttaaatctctcggttttatcttccatcaccaacccaattattcct |
31852918 |
T |
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| Q |
416 |
ctccctatagtaattcaacaagg |
438 |
Q |
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| T |
31852919 |
ctccctatagtaattcaacaagg |
31852941 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 503 - 769
Target Start/End: Original strand, 31853006 - 31853272
Alignment:
| Q |
503 |
ttggttgttttttaatacatacccttgacgttgaagaaaataacctcagaatcaaagtggtgtggtgaaacaaaagcatgtcctttagcttctaaaatgg |
602 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31853006 |
ttggttgttttttaatacatacccttgacgttgaagaaaataacctcagaatcaaagtggtgtggtgaaacaaaagcatgtcctttagcttctaaaatgg |
31853105 |
T |
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| Q |
603 |
tcaaaccataattctcaaagtttctgagcagctttgatttttgatcaaacatgtttagagccataactctaccatcatctgtttctattttggtttcaaa |
702 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
31853106 |
tcaaaccataattctcaaagtttctaagcagctttgatttttgatcaaacatgtttagagccataactctaccatcatctgtatctattttggtttcaaa |
31853205 |
T |
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| Q |
703 |
atctctgtcttcaaaaacataaggattttcatcctcttcatgttcatgttcacgttcatgttgatgt |
769 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31853206 |
atctctgtcttcaaaaacataaggattttcatcctcttcatgttcatgttcacgttcatgttgatgt |
31853272 |
T |
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