View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8980_low_30 (Length: 368)
Name: NF8980_low_30
Description: NF8980
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8980_low_30 |
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Alignment Details
Target: chr2 (Bit Score: 305; Significance: 1e-171; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 1 - 353
Target Start/End: Original strand, 10203626 - 10203985
Alignment:
| Q |
1 |
atcaattagaggatagaataatccaattcttgattggactggatggtgattatcaaattgtggcttcacaatttctgtttatggaacttatgcccttgat |
100 |
Q |
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| T |
10203626 |
atcaattagaggatagaataatccaattcttgattggactggatggtgattatcaaattgtggcttcacaatttctatttatggaacttatgcccttgat |
10203725 |
T |
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| Q |
101 |
aaacaaagttttctcaatggttaagcaacaagggcgaaaaatgcaatatggattatcacctaaggca------gagggtggtgtcctgatgagtatagaa |
194 |
Q |
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| T |
10203726 |
aaacaaagttttctcaatggttaagcaacaagggcgaaaaatgcaatatggattatcacctagtgtaaatgatgagagtggtgtcctgatgagtatagaa |
10203825 |
T |
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| Q |
195 |
gatgtatctaaaaccccaaggcagagggaaatggatcaaaagcaacaatgctcgtgaaaatgaatgagttggttcttatgctaattttgcatgtactaac |
294 |
Q |
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| T |
10203826 |
gatgtatctaaaaccctaaggcagagggaaatggatcaaaagcaacaatgctcgtgaaaatgaatgagttggttcttatgctaattttgcatgtactaac |
10203925 |
T |
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| Q |
295 |
gcagaagaacatcaaggaaaatcgatggtgaatgctt-aaagaaatgatgacgaaaatgt |
353 |
Q |
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| T |
10203926 |
gcagaagaacatcaaggaaaatcgatggtgaatgcttaaaagaaatgatgacgaaaatgt |
10203985 |
T |
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