View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8980_low_31 (Length: 357)

Name: NF8980_low_31
Description: NF8980
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8980_low_31
NF8980_low_31
[»] chr3 (18 HSPs)
chr3 (13-268)||(30068952-30069201)
chr3 (13-268)||(30049668-30049918)
chr3 (271-342)||(30069243-30069314)
chr3 (271-342)||(30049960-30050033)
chr3 (282-342)||(30072843-30072903)
chr3 (216-265)||(30056291-30056341)
chr3 (27-85)||(30072554-30072612)
chr3 (216-268)||(30086348-30086401)
chr3 (216-268)||(30173494-30173547)
chr3 (187-268)||(30459500-30459576)
chr3 (212-268)||(30072735-30072792)
chr3 (34-85)||(30459678-30459729)
chr3 (292-342)||(30458857-30458907)
chr3 (271-312)||(30081864-30081905)
chr3 (213-268)||(30133186-30133242)
chr3 (213-268)||(30134582-30134638)
chr3 (213-268)||(30144133-30144189)
chr3 (302-342)||(30154610-30154650)


Alignment Details
Target: chr3 (Bit Score: 221; Significance: 1e-121; HSPs: 18)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 13 - 268
Target Start/End: Original strand, 30068952 - 30069201
Alignment:
Q  13 gagacatacataacttaggatgttcctcaaccttcctgtgaaaatttccacttaccacattgtcattttcgcaaaaacccacacaaacaccgaacgaaca 112  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||    
T  30068952 gagacatacataacttaggatgttcgtcaaccttcctgtgaaaatttccacttaccacattgtctttttcgcaaaaacccacacaaacaccgaacgtaca 30069051  T
Q  113 atcaacgagtacgcattcacaaccgttacgacaacctggcaaaaaggtaccgcaactttgttgacatcctgctccttctactttgttcatcggaaacatt 212  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       
T  30069052 atcaacgagtacgcattcacaaccgttacgacaacctggcaaaaaggtaccgcaactttgttgacatcctgctccttctactttgttcatcggaaac--- 30069148  T
Q  213 aatattactgtaaatgacaaagctaattaaatttgaacaacatacaaataccatta 268  Q
       |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30069149 ---attactgtaaatgacaaagctaattaaatttgaacaacatacaaataccatta 30069201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 13 - 268
Target Start/End: Original strand, 30049668 - 30049918
Alignment:
Q  13 gagacatacataacttaggatgttcctcaaccttcctgtgaaaatttccacttaccacattgtcattttcgcaaaaacccacacaaacaccgaacgaaca 112  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||| |||    
T  30049668 gagacatacataacttaggatgttcctcaaccttcctgtgaaaatttccacttaccacattgtcattttcgcaaaagcccacacaaacaccgtacgtaca 30049767  T
Q  113 atcaacgagtacgcattcacaaccgttacgacaacctggcaaaaaggtaccgcaactttgttgacatcctgctccttctactttgttcatcggaaacatt 212  Q
    ||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||       
T  30049768 atcaacgggtacgcattcacaatcgttacgacaacctggcaaaaaggtaccgcaactttgttgacatcctgctccttctacttttttcatcggaaac--- 30049864  T
Q  213 aatattactgtaaatgacaaagctaattaaa-tttgaacaacatacaaataccatta 268  Q
       |||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  30049865 ---attactgtaaatgacaaagctaattaaagtttgaacaacatacaaataccatta 30049918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 271 - 342
Target Start/End: Original strand, 30069243 - 30069314
Alignment:
Q  271 atttctcacgatttattaaacataaatagaaatgcatgcatgttatatattggtgaggaagatgattgaaat 342  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  30069243 atttctcacgatttattaaacataaatagaaatgcatgcatgttatatatgggtgaggaagatgattgaaat 30069314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 271 - 342
Target Start/End: Original strand, 30049960 - 30050033
Alignment:
Q  271 atttctcacgatttattaaacataaatagaaatgcatgcatg--ttatatattggtgaggaagatgattgaaat 342  Q
    |||||||| ||||||||||||||||||||||||||||| |||   |||||||||||||| ||||||||||||||    
T  30049960 atttctcatgatttattaaacataaatagaaatgcatgaatggtatatatattggtgagaaagatgattgaaat 30050033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 282 - 342
Target Start/End: Original strand, 30072843 - 30072903
Alignment:
Q  282 tttattaaacataaatagaaatgcatgcatgttatatattggtgaggaagatgattgaaat 342  Q
    |||||||| |||||||||||||||||| ||| |||||||||||||| ||||||||||||||    
T  30072843 tttattaatcataaatagaaatgcatgaatggtatatattggtgagaaagatgattgaaat 30072903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 216 - 265
Target Start/End: Original strand, 30056291 - 30056341
Alignment:
Q  216 attactgtaaatgacaaagctaattaaa-tttgaacaacatacaaatacca 265  Q
    |||||||||||||||||||||||||||| ||||||||||||||| ||||||    
T  30056291 attactgtaaatgacaaagctaattaaagtttgaacaacatacacatacca 30056341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 27 - 85
Target Start/End: Original strand, 30072554 - 30072612
Alignment:
Q  27 ttaggatgttcctcaaccttcctgtgaaaatttccacttaccacattgtcattttcgca 85  Q
    ||||||||||||||||||||||| |||||||| |||||| ||||||||  |||||||||    
T  30072554 ttaggatgttcctcaaccttcctctgaaaattcccacttgccacattgcgattttcgca 30072612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 216 - 268
Target Start/End: Original strand, 30086348 - 30086401
Alignment:
Q  216 attactgtaaatgacaaagctaatta-aatttgaacaacatacaaataccatta 268  Q
    |||||||||||||||||||||||||| | ||||||||||||||| |||||||||    
T  30086348 attactgtaaatgacaaagctaattatagtttgaacaacatacacataccatta 30086401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 216 - 268
Target Start/End: Original strand, 30173494 - 30173547
Alignment:
Q  216 attactgtaaatgacaaagctaattaaa-tttgaacaacatacaaataccatta 268  Q
    |||||||||||||||||||||| ||||| ||||||||||||||| |||||||||    
T  30173494 attactgtaaatgacaaagctagttaaagtttgaacaacatacacataccatta 30173547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 187 - 268
Target Start/End: Complemental strand, 30459576 - 30459500
Alignment:
Q  187 cttctactttgttcatcggaaacattaatattactgtaaatgacaaagctaattaaa-tttgaacaacatacaaataccatta 268  Q
    |||||||||| ||||||||||||||||      |||||||  ||||||||||||||| ||||||||||||||| |||||||||    
T  30459576 cttctactttcttcatcggaaacatta------ctgtaaagaacaaagctaattaaagtttgaacaacatacatataccatta 30459500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 212 - 268
Target Start/End: Original strand, 30072735 - 30072792
Alignment:
Q  212 taatattactgtaaatgacaaagctaattaaa-tttgaacaacatacaaataccatta 268  Q
    |||||| ||||||| ||||||||||||||||| | ||||||||||||||| |||||||    
T  30072735 taatatcactgtaattgacaaagctaattaaagtctgaacaacatacaaacaccatta 30072792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 34 - 85
Target Start/End: Complemental strand, 30459729 - 30459678
Alignment:
Q  34 gttcctcaaccttcctgtgaaaatttccacttaccacattgtcattttcgca 85  Q
    |||||||||||||||| |||||||| |||||||||| ||||  |||||||||    
T  30459729 gttcctcaaccttcctctgaaaattcccacttaccaaattgggattttcgca 30459678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 292 - 342
Target Start/End: Complemental strand, 30458907 - 30458857
Alignment:
Q  292 ataaatagaaatgcatgcatgttatatattggtgaggaagatgattgaaat 342  Q
    ||||||||||||| ||||||| ||||||||||| || ||||| ||||||||    
T  30458907 ataaatagaaatgtatgcatggtatatattggtaagaaagataattgaaat 30458857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 271 - 312
Target Start/End: Original strand, 30081864 - 30081905
Alignment:
Q  271 atttctcacgatttattaaacataaatagaaatgcatgcatg 312  Q
    |||||||| ||||||| ||||||||||| |||||||||||||    
T  30081864 atttctcatgatttataaaacataaataaaaatgcatgcatg 30081905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 213 - 268
Target Start/End: Original strand, 30133186 - 30133242
Alignment:
Q  213 aatattactgtaaatgacaaagctaattaaa-tttgaacaacatacaaataccatta 268  Q
    ||||| ||| ||||||| ||||||||||||  ||||||||||||||| |||||||||    
T  30133186 aatatcactataaatgataaagctaattaaggtttgaacaacatacacataccatta 30133242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 213 - 268
Target Start/End: Original strand, 30134582 - 30134638
Alignment:
Q  213 aatattactgtaaatgacaaagctaattaaa-tttgaacaacatacaaataccatta 268  Q
    ||||| ||| ||||||| ||||||||||||  ||||||||||||||| |||||||||    
T  30134582 aatatcactataaatgataaagctaattaaggtttgaacaacatacacataccatta 30134638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 213 - 268
Target Start/End: Original strand, 30144133 - 30144189
Alignment:
Q  213 aatattactgtaaatgacaaagctaattaaa-tttgaacaacatacaaataccatta 268  Q
    ||||| ||| ||||||| ||||||||||||  ||||||||||||||| |||||||||    
T  30144133 aatatcactataaatgataaagctaattaaggtttgaacaacatacacataccatta 30144189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 302 - 342
Target Start/End: Original strand, 30154610 - 30154650
Alignment:
Q  302 atgcatgcatgttatatattggtgaggaagatgattgaaat 342  Q
    |||||||||||||||||||||||  | ||||||||||||||    
T  30154610 atgcatgcatgttatatattggttcgaaagatgattgaaat 30154650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University