View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8980_low_37 (Length: 339)

Name: NF8980_low_37
Description: NF8980
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8980_low_37
NF8980_low_37
[»] chr4 (3 HSPs)
chr4 (1-339)||(51719155-51719476)
chr4 (1-339)||(628484-628822)
chr4 (180-289)||(38653572-38653681)
[»] chr1 (3 HSPs)
chr1 (1-336)||(28445866-28446218)
chr1 (1-339)||(49030621-49030956)
chr1 (1-76)||(48957095-48957170)
[»] chr3 (9 HSPs)
chr3 (1-334)||(21566396-21566718)
chr3 (2-268)||(13840075-13840355)
chr3 (1-339)||(39685576-39685915)
chr3 (1-66)||(44430696-44430761)
chr3 (276-339)||(53814188-53814251)
chr3 (1-81)||(53814107-53814186)
chr3 (289-339)||(13840363-13840413)
chr3 (8-49)||(24902190-24902231)
chr3 (180-236)||(11423261-11423317)
[»] scaffold0041 (2 HSPs)
scaffold0041 (1-268)||(23918-24198)
scaffold0041 (289-339)||(23860-23910)
[»] chr6 (4 HSPs)
chr6 (206-339)||(17436173-17436306)
chr6 (1-339)||(25403358-25403696)
chr6 (186-331)||(34131515-34131664)
chr6 (1-48)||(2030159-2030206)
[»] scaffold0246 (1 HSPs)
scaffold0246 (1-339)||(2177-2516)
[»] chr7 (5 HSPs)
chr7 (1-127)||(41799150-41799276)
chr7 (167-268)||(41798996-41799098)
chr7 (222-268)||(44552508-44552554)
chr7 (289-339)||(41798938-41798988)
chr7 (289-339)||(44552450-44552500)
[»] chr5 (2 HSPs)
chr5 (243-339)||(6705642-6705738)
chr5 (1-127)||(6705476-6705606)
[»] chr2 (2 HSPs)
chr2 (2-126)||(942585-942709)
chr2 (167-268)||(942773-942875)
[»] scaffold0262 (2 HSPs)
scaffold0262 (182-305)||(8617-8739)
scaffold0262 (9-49)||(8875-8915)
[»] chr8 (2 HSPs)
chr8 (1-103)||(9387256-9387358)
chr8 (192-339)||(9387434-9387568)


Alignment Details
Target: chr4 (Bit Score: 192; Significance: 1e-104; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 1 - 339
Target Start/End: Original strand, 51719155 - 51719476
Alignment:
Q  1 gattccagaggtggtttcaaatccactctttttcagcatcttggagggcatccagatcaattatagtgtgtttgacgatcatcaggttccgaggaggagg 100  Q
    |||||||||||||||||||||||||||||| || ||||||||||||||| ||| || | ||||||| |||||||||||||||||||||||||||||||||    
T  51719155 gattccagaggtggtttcaaatccactcttcttaagcatcttggagggcctccggaccgattatagcgtgtttgacgatcatcaggttccgaggaggagg 51719254  T
Q  101 tctaggagtcatagtccacaggagcagtagtaatgtcttgtttttatgacttgttttttatatgacttgtagta-tttcttgacattttggttgtactat 199  Q
    ||||||| ||||||||||||||||||| |||| |||||||||||||||||||| |||||||||| ||||||||| ||||||||||||||               
T  51719255 tctaggactcatagtccacaggagcagcagtagtgtcttgtttttatgacttg-tttttatatggcttgtagtattttcttgacatttt----------- 51719342  T
Q  200 atttacatttgcgcggttggccttatttatgacatttacattattttttgttaaaattgtgtttctaaattattattgaatgactgcatgttctctaaat 299  Q
          ||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||| | |||||||||||||||||||||||||||||||||    
T  51719343 ------atttgcgcggttggccttatttatgacatttacgttatttttcgttaaaattgtgtttttgaattattattgaatgactgcatgttctctaaat 51719436  T
Q  300 tatgagatctgaatgaatcaatgaatggttgtaccaaaat 339  Q
    |||||| || | ||||| ||||||||||||||||||||||    
T  51719437 tatgagttcaggatgaaccaatgaatggttgtaccaaaat 51719476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 1 - 339
Target Start/End: Complemental strand, 628822 - 628484
Alignment:
Q  1 gattccagaggtggtttcaaatccactctttttcagcatcttggagggcatccagatcaattatagtgtgtttgacgatcatcaggttccgaggaggagg 100  Q
    |||||||||||||||||| ||||||||||| ||||||| |||||||||  ||| || | ||||||| |||||||||||||| ||||||||||||||||||    
T  628822 gattccagaggtggtttctaatccactcttcttcagcaacttggaggggctccggaccgattatagcgtgtttgacgatcagcaggttccgaggaggagg 628723  T
Q  101 tctaggagtcatagtccacaggag---cagtagtaatgtcttgtttttatgacttgttttttatatgacttgtagta------------tttcttgacat 185  Q
    ||||||||||||||||| || |||   ||| ||||  |||||   ||||||||||||||||| |||||||| | | |            ||| |||||||    
T  628722 tctaggagtcatagtccgcatgagcaacagcagtagggtctt-agtttatgacttgtttttt-tatgactttttggatgtttgaattattttgttgacat 628625  T
Q  186 tttggttgtactatatttacatttgcgcggttggccttatttatgacatttacattattttttgttaaaattgtgtttctaaattattattgaatgactg 285  Q
    ||| |||||||||  ||||||||||| ||||||| |||||||||||||||||| |||||||| ||||||||||||||||||||  ||||||             
T  628624 tttagttgtactacttttacatttgcacggttgggcttatttatgacatttacgttatttttcgttaaaattgtgtttctaaa--attatt--------- 628536  T
Q  286 catgttctctaaattatgagatctgaatgaatcaatgaatggttgtaccaaaat 339  Q
       ||||||||||||||||| ||||  |||||||||||||||||||||||||||    
T  628535 --cgttctctaaattatgagttctgtttgaatcaatgaatggttgtaccaaaat 628484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 180 - 289
Target Start/End: Original strand, 38653572 - 38653681
Alignment:
Q  180 tgacattttggttgtactatatttacatttgcgcggttggccttatttatgacatttacattattttttgttaaaattgtgtttctaaattattattgaa 279  Q
    |||||||||||||||| |||||||||||||||||  |||  ||||||||||||||||   ||| |||| ||||| ||||||| |||||||||| | ||||    
T  38653572 tgacattttggttgtaatatatttacatttgcgcacttgcgcttatttatgacattttagttaattttcgttaatattgtgtatctaaattatgaatgaa 38653671  T
Q  280 tgactgcatg 289  Q
    ||| ||||||    
T  38653672 tgaatgcatg 38653681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 157; Significance: 2e-83; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 1 - 336
Target Start/End: Original strand, 28445866 - 28446218
Alignment:
Q  1 gattccagaggtggtttcaaatccactctttttcagcatcttggagggcatccagatcaattatagtgtgtttgacgatcatcaggttccgaggaggagg 100  Q
    |||||||||||||||||||||||||||||| ||   ||| ||||||||| ||  || | ||||||| ||||||||| |||| || |||||||||| ||||    
T  28445866 gattccagaggtggtttcaaatccactcttctttgacattttggagggcctctggaccgattatagcgtgtttgaccatcagcatgttccgaggacgagg 28445965  T
Q  101 tctaggagtcatagtccacaggag---cagtagtaatgtcttgtt-----tttatgacttgttt-------tttatatgacttgtagtattt-cttgaca 184  Q
    ||||||||||||| ||| ||||||   ||| ||||  |||||  |     |||||||||| |||       ||| ||||||||||||||||| |||||||    
T  28445966 tctaggagtcatattccgcaggagtagcagcagtacggtcttagtcttagtttatgacttttttatttttatttttatgacttgtagtattttcttgaca 28446065  T
Q  185 ttttggttgtactatatttacatttgcgcggttggccttatttatgacatttacattatttttt-gttaaaattgtgtttctaaattattattgaatgac 283  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||    
T  28446066 ttttggttgtactatatttacatttgcacggttggccttatttatgacatttacgttattttttcgttaaaattgtgtttctaaattattattgaatgac 28446165  T
Q  284 tgcatgttctctaaattatgagatctgaatgaatcaatgaatggttgtaccaa 336  Q
    |||||| ||||||||||||||| |||| |||||||||| ||||||||||||||    
T  28446166 tgcatgatctctaaattatgagttctggatgaatcaatcaatggttgtaccaa 28446218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 1 - 339
Target Start/End: Complemental strand, 49030956 - 49030621
Alignment:
Q  1 gattccagaggtggtttcaaatccactctttttcagcatcttggagggcatccagatcaattatagtgtgtttgacgatcatcaggttccgaggaggagg 100  Q
    |||||||||||||||||| ||||||||||| |||| |||||| |||||| ||| || | ||||||| |||||||||||||| |||||| |||||||||||    
T  49030956 gattccagaggtggtttctaatccactcttcttcaacatcttagagggcctccggaccgattatagcgtgtttgacgatcagcaggtt-cgaggaggagg 49030858  T
Q  101 tctaggagtcatagtccacaggagcagtagtaatgtcttgtttttatgacttgttttttatatgac-----------ttgtagta-tttcttgacatttt 188  Q
    ||||||||||||| ||| ||||| ||| ||||  |||||   ||||||||||  ||||| ||||||           ||||| || ||| ||||||||||    
T  49030857 tctaggagtcataatccgcaggaccagcagtagggtctt-agtttatgactttgtttttttatgactttttggatgtttgtattattttgttgacatttt 49030759  T
Q  189 ggttgtactatatttacatttgcgcggttggccttatttatgacatttacattattttttgttaaaattgtgtttctaaattattattgaatgactgcat 288  Q
     |||||||||  ||||||||||| ||||||| |||||||||||||||||| |||||||| ||||||||||||||||||||  ||||||                
T  49030758 agttgtactacttttacatttgcacggttgggcttatttatgacatttaccttatttttcgttaaaattgtgtttctaaa--attatt-----------c 49030672  T
Q  289 gttctctaaattatgagatctgaatgaatcaatgaatggttgtaccaaaat 339  Q
    ||||||||||||||||| ||||  ||||||||||||||| |||||||||||    
T  49030671 gttctctaaattatgagttctggttgaatcaatgaatggctgtaccaaaat 49030621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 1 - 76
Target Start/End: Original strand, 48957095 - 48957170
Alignment:
Q  1 gattccagaggtggtttcaaatccactctttttcagcatcttggagggcatccagatcaattatagtgtgtttgac 76  Q
    ||||||||||||||||||| ||||||||||||||||||| ||||||||| |||||| | ||||||| |||||||||    
T  48957095 gattccagaggtggtttcacatccactctttttcagcattttggagggcctccagaccgattatagcgtgtttgac 48957170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 128; Significance: 4e-66; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 1 - 334
Target Start/End: Original strand, 21566396 - 21566718
Alignment:
Q  1 gattccagaggtggtttcaaatccactctttttcagcatcttggagggcatccagatcaattatagtgtgtttgacgatcatcaggttccgaggaggagg 100  Q
    |||||| |||||||||||||||||||| || |||||||| ||||||||| | |||| | ||||||| ||||||||| |||| ||||||| ||||||||||    
T  21566396 gattcctgaggtggtttcaaatccacttttcttcagcattttggagggcctacagaccgattatagcgtgtttgaccatcagcaggttctgaggaggagg 21566495  T
Q  101 tctaggagtcatagtccacaggagcagtagtaatgtcttgtttttatgacttgttttttatatgacttgtagta--tttcttgacattttggttgtacta 198  Q
    |||||||||||||||||||| |||||| |||||||||||||||||||||||| |||  |||     ||||||||  ||||| |||||| ||||||||  |    
T  21566496 tctaggagtcatagtccacatgagcagcagtaatgtcttgtttttatgacttttttgctat-----ttgtagtatttttctcgacattgtggttgtatga 21566590  T
Q  199 tatttacatttgcgcggttggccttatttatgacatttacattattttttgttaaaattgtgtttctaaattattattgaatgactgcatgttctctaaa 298  Q
    |||||||||||| |        | | ||||||||||||   ||| |||| |||||||| | |||| |||||||||||||||||| |||||||||||||||    
T  21566591 tatttacatttgtg--------cctctttatgacatttgagttaattttagttaaaatcgcgtttttaaattattattgaatgaatgcatgttctctaaa 21566682  T
Q  299 ttatgagatctgaatgaatcaatgaatggttgtacc 334  Q
    ||||||| | ||  ||||||||||||||||||||||    
T  21566683 ttatgagttttggttgaatcaatgaatggttgtacc 21566718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 2 - 268
Target Start/End: Original strand, 13840075 - 13840355
Alignment:
Q  2 attccagaggtggtttcaaatccactctttttcagcatcttggagggcatccagatcaattatagtgtgtttgacgatcatcaggttccgaggaggaggt 101  Q
    |||| ||||||||||||||||| ||| || |||||||||||||| ||| |||||| | |||| || |||||||||||||| |||||||| |||| |||||    
T  13840075 attcgagaggtggtttcaaatctactattcttcagcatcttggaaggcctccagaccgattacagcgtgtttgacgatcagcaggttccaaggaagaggt 13840174  T
Q  102 ctaggagtcatagtccacagg---agcagtagtaatgtcttgtttttatgacttgttttttatatgac-----------ttgtagta-tttcttgacatt 186  Q
    |||||||||||||||| ||||   ||||| ||||  |||||   ||||||||||||||||| ||||||           |||||||| |||| |||||||    
T  13840175 ctaggagtcatagtccgcaggagcagcagcagtagggtctt-aatttatgacttgttttttttatgactttttggatgtttgtagtattttcctgacatt 13840273  T
Q  187 ttggttgtactatatttacatttgcgcggttggccttatttatgacatttacattattttttgttaaaattgtgtttctaaa 268  Q
    ||||||||||||  ||||||||||| ||||||| |||||||||||||||||| ||||||||  |||||||||||||||||||    
T  13840274 ttggttgtactacttttacatttgcacggttggacttatttatgacatttacgttatttttcattaaaattgtgtttctaaa 13840355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 1 - 339
Target Start/End: Complemental strand, 39685915 - 39685576
Alignment:
Q  1 gattccagaggtggtttcaaatccactctttttcagcatcttggagggcatccagatcaattatagtgtgtttgacgatcatcaggttccgaggaggagg 100  Q
    ||||||||||||||||| |||||||||||| || |||||||||||| || |||  | | ||||||| ||||||||||||||  |||| ||||||||||||    
T  39685915 gattccagaggtggttttaaatccactcttctttagcatcttggagagcctccgaaccgattatagcgtgtttgacgatcagtaggtaccgaggaggagg 39685816  T
Q  101 tctaggagtcatagtccacaggagcag---tagtaatgtcttgtttttatgacttgttttttatatgac-----------ttgtagta-tttcttgacat 185  Q
    |||||||||||||| || |||||||||    ||||  |||||   |||||||| |||||||| ||||||           |||||||| |||||||||||    
T  39685815 tctaggagtcatagcccgcaggagcagcatcagtagggtctt-agtttatgacgtgttttttttatgactttttggatgtttgtagtattttcttgacat 39685717  T
Q  186 tttggttgtactatatttacatttgcgcggttggccttatttatgacatttacattattttttgttaaaattgtgtttctaaattattattgaatgactg 285  Q
    |||||||||||||  ||||||||||| ||||||| |||||||||||||||||  |||||||| ||||||||||||| ||||||  ||||||             
T  39685716 tttggttgtactacttttacatttgcacggttgggcttatttatgacatttatgttatttttcgttaaaattgtgtgtctaaa--attatt--------- 39685628  T
Q  286 catgttctctaaattatgagatctgaatgaatcaatgaatggttgtaccaaaat 339  Q
       ||||||||||||||||| ||||  ||||||||||||||||||||| |||||    
T  39685627 --cgttctctaaattatgagttctggttgaatcaatgaatggttgtacaaaaat 39685576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 44430761 - 44430696
Alignment:
Q  1 gattccagaggtggtttcaaatccactctttttcagcatcttggagggcatccagatcaattatag 66  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||| ||| || | |||||||    
T  44430761 gattccagaggtggtttcaaatccactcttcttcagcatcttggagggcctccggaccgattatag 44430696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 276 - 339
Target Start/End: Original strand, 53814188 - 53814251
Alignment:
Q  276 tgaatgactgcatgttctctaaattatgagatctgaatgaatcaatgaatggttgtaccaaaat 339  Q
    |||||| ||||||| ||||||||||||||| |||| || |||||||||||||||||||||||||    
T  53814188 tgaatggctgcatgatctctaaattatgagttctggattaatcaatgaatggttgtaccaaaat 53814251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 81
Target Start/End: Original strand, 53814107 - 53814186
Alignment:
Q  1 gattccagaggtggtttcaaatccactctttttcagcatcttggagggcatccagatcaattatagtgtgtttgacgatca 81  Q
    ||||| |||||||||| |||||||| |||| ||  |||| ||||||||| |||||| | ||||||||||||||||| ||||    
T  53814107 gattctagaggtggtt-caaatccattcttctttggcattttggagggcctccagaccgattatagtgtgtttgaccatca 53814186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 289 - 339
Target Start/End: Original strand, 13840363 - 13840413
Alignment:
Q  289 gttctctaaattatgagatctgaatgaatcaatgaatggttgtaccaaaat 339  Q
    ||||||||||||||||| ||||  |||||||||||||| ||||| ||||||    
T  13840363 gttctctaaattatgagttctggttgaatcaatgaatgattgtatcaaaat 13840413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 8 - 49
Target Start/End: Original strand, 24902190 - 24902231
Alignment:
Q  8 gaggtggtttcaaatccactctttttcagcatcttggagggc 49  Q
    |||||||||||||||||||| ||||| ||||| |||||||||    
T  24902190 gaggtggtttcaaatccactattttttagcattttggagggc 24902231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 180 - 236
Target Start/End: Complemental strand, 11423317 - 11423261
Alignment:
Q  180 tgacattttggttgtactatatttacatttgcgcggttggccttatttatgacattt 236  Q
    ||||||||| |||||| |||||||||||||||| | |||  || |||||||||||||    
T  11423317 tgacatttttgttgtaatatatttacatttgcgtgtttgcgctaatttatgacattt 11423261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0041 (Bit Score: 115; Significance: 2e-58; HSPs: 2)
Name: scaffold0041
Description:

Target: scaffold0041; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 1 - 268
Target Start/End: Complemental strand, 24198 - 23918
Alignment:
Q  1 gattccagaggtggtttcaaatccactctttttcagcatcttggagggcatccagatcaattatagtgtgtttgacgatcatcaggttccgaggaggagg 100  Q
    |||||||||||||||||| ||||||||||| ||||||||||| |||||| ||| || | ||||||| |||||||||||||| ||||||||||||||||||    
T  24198 gattccagaggtggtttctaatccactcttcttcagcatcttagagggcctccggaacgattatagcgtgtttgacgatcagcaggttccgaggaggagg 24099  T
Q  101 tctaggagtcatagtccacagg---agcagtagtaatgtcttgtttttatgacttgttttttatatgac-----------ttgtagta-tttcttgacat 185  Q
    | ||||||||||||||| ||||   ||||||||||  |||||   |||||||||| |||||| ||||||           |||||||| |||||||||||    
T  24098 tataggagtcatagtccgcaggagcagcagtagtagggtctt-agtttatgactt-ttttttttatgactttttggatgtttgtagtattttcttgacat 24001  T
Q  186 tttggttgtactatatttacatttgcgcggttggccttatttatgacatttacattattttttgttaaaattgtgtttctaaa 268  Q
    |||||||||||||  ||||||||||| ||||||| ||||||||||| |||||| |||||||| ||||||||||||||||||||    
T  24000 tttggttgtactacttttacatttgcacggttgggcttatttatgatatttacgttatttttcgttaaaattgtgtttctaaa 23918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0041; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 289 - 339
Target Start/End: Complemental strand, 23910 - 23860
Alignment:
Q  289 gttctctaaattatgagatctgaatgaatcaatgaatggttgtaccaaaat 339  Q
    ||||||||||||||  | ||||  |||||||||||||||||||||||||||    
T  23910 gttctctaaattattcgttctggttgaatcaatgaatggttgtaccaaaat 23860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 110; Significance: 2e-55; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 206 - 339
Target Start/End: Original strand, 17436173 - 17436306
Alignment:
Q  206 atttgcgcggttggccttatttatgacatttacattattttttgttaaaattgtgtttctaaattattattgaatgactgcatgttctctaaattatgag 305  Q
    |||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17436173 atttgcgcggttggccttatttatgacatttacattattttacgttaaaattgtgtttctaaattattattgaatgactgcatgttctctaaattatgag 17436272  T
Q  306 atctgaatgaatcaatgaatggttgtaccaaaat 339  Q
     |||  |||||| |||||||||||||||||||||    
T  17436273 ttctagatgaataaatgaatggttgtaccaaaat 17436306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 94; E-Value: 8e-46
Query Start/End: Original strand, 1 - 339
Target Start/End: Original strand, 25403358 - 25403696
Alignment:
Q  1 gattccagaggtggtttcaaatccactctttttcagcatcttggagggcatccagatcaattatagtgtgtttgacgatcatcaggttccgaggaggagg 100  Q
    |||||||||||||||||| ||||||||||| |||| |||||| ||||||||||| | | ||||||  |||||||||||||| ||||||||||||||||||    
T  25403358 gattccagaggtggtttctaatccactcttcttcaacatcttagagggcatccaaaccgattataacgtgtttgacgatcagcaggttccgaggaggagg 25403457  T
Q  101 tctaggagtcatagtccacaggagcagtagtaat---gtcttgtttttatgacttgttttttatatgacttgtagta------------tttcttgacat 185  Q
    | ||||||||||||||| |||||| || || |||   |||||   ||||||||||||||| | |||| ||| | | |            ||| |||||||    
T  25403458 tataggagtcatagtccgcaggagtagcagcaatagggtctt-agtttatgacttgttttat-tatggctttttggatgtttatattattttgttgacat 25403555  T
Q  186 tttggttgtactatatttacatttgcgcggttggccttatttatgacatttacattattttttgttaaaattgtgtttctaaattattattgaatgactg 285  Q
    ||| |||||||||  ||||||||||| ||||||| |||||||||||||||||| |||||||| ||||||||||||||||||||  ||||||             
T  25403556 tttagttgtactacttttacatttgcacggttgggcttatttatgacatttacgttatttttcgttaaaattgtgtttctaaa--attatt--------- 25403644  T
Q  286 catgttctctaaattatgagatctgaatgaatcaatgaatggttgtaccaaaat 339  Q
       ||||||||||||||||| |||   |||||||||||||||||||||||||||    
T  25403645 --cgttctctaaattatgagttctagttgaatcaatgaatggttgtaccaaaat 25403696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 186 - 331
Target Start/End: Original strand, 34131515 - 34131664
Alignment:
Q  186 tttggttgtactatatttacatttgcgcggttggccttatttatgacatttacattattttttgttaaaattgtgtttctaaatt----attattgaatg 281  Q
    ||||| |||| || |||||| ||||| ||||||  | | ||||||||||||   ||| |||| ||||||||||||||||||||||    || | ||||||    
T  34131515 tttggatgtaatacatttacttttgcacggttgcgcctctttatgacatttgagttaattttcgttaaaattgtgtttctaaattatgaatgaatgaatg 34131614  T
Q  282 actgcatgttctctaaattatgagatctgaatgaatcaatgaatggttgt 331  Q
    | |||||||||| ||||||||||| | ||  ||||  |||||||||||||    
T  34131615 aatgcatgttctttaaattatgagttttggttgaaagaatgaatggttgt 34131664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 2030159 - 2030206
Alignment:
Q  1 gattccagaggtggtttcaaatccactctttttcagcatcttggaggg 48  Q
    |||||||||||||| |||||||||||||||||||| ||| ||||||||    
T  2030159 gattccagaggtggcttcaaatccactctttttcaacattttggaggg 2030206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0246 (Bit Score: 102; Significance: 1e-50; HSPs: 1)
Name: scaffold0246
Description:

Target: scaffold0246; HSP #1
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 1 - 339
Target Start/End: Original strand, 2177 - 2516
Alignment:
Q  1 gattccagaggtggtttcaaatccactctttttcagcatcttggagggcatccagatcaattatagtgtgtttgacgatcatcaggttccgaggaggagg 100  Q
    |||||||| ||||||||| |||||| |||| ||||||||||| |||||| ||| || | ||||||| |||||||||||||| |||||||||||||||| |    
T  2177 gattccaggggtggtttctaatccattcttcttcagcatcttagagggcctccggaccgattatagcgtgtttgacgatcagcaggttccgaggaggaag 2276  T
Q  101 tctaggagtcatagtccacaggagcag---tagtaatgtcttgtttttatgacttgttttttatatgacttgtagta------------tttcttgacat 185  Q
    |||||| ||||| |||| |||||||||    ||||  |||||   ||||||||||||||||| |||||||| | | |            ||| |||||||    
T  2277 tctaggggtcattgtccgcaggagcagcaacagtagggtctt-agtttatgacttgttttttttatgactttttggatgtttgaaatattttgttgacat 2375  T
Q  186 tttggttgtactatatttacatttgcgcggttggccttatttatgacatttacattattttttgttaaaattgtgtttctaaattattattgaatgactg 285  Q
    ||| |||||||||  ||||||||||| ||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||  ||||||             
T  2376 tttagttgtactaattttacatttgcacggttgggcttatttatgacatttacattatttttcgttaaaattgtgtttctaaa--attatt--------- 2464  T
Q  286 catgttctctaaattatgagatctgaatgaatcaatgaatggttgtaccaaaat 339  Q
       ||||||||||||||||| ||||  |||||||||||||||||||||||||||    
T  2465 --cgttctctaaattatgagttctggttgaatcaatgaatggttgtaccaaaat 2516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 79; Significance: 7e-37; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 1 - 127
Target Start/End: Complemental strand, 41799276 - 41799150
Alignment:
Q  1 gattccagaggtggtttcaaatccactctttttcagcatcttggagggcatccagatcaattatagtgtgtttgacgatcatcaggttccgaggaggagg 100  Q
    ||||||||| |||||||| ||||||||||| || |||||||| |||||| ||| |||| ||||||| |||||||||||||| ||||||||||||||||||    
T  41799276 gattccagatgtggtttctaatccactcttcttgagcatcttagagggcctccggatcgattatagcgtgtttgacgatcagcaggttccgaggaggagg 41799177  T
Q  101 tctaggagtcatagtccacaggagcag 127  Q
    ||||||||||||||||| || ||||||    
T  41799176 tctaggagtcatagtccgcaagagcag 41799150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 167 - 268
Target Start/End: Complemental strand, 41799098 - 41798996
Alignment:
Q  167 ttgtagtattt-cttgacattttggttgtactatatttacatttgcgcggttggccttatttatgacatttacattattttttgttaaaattgtgtttct 265  Q
    ||||||||||| |||||||||||||||||||||  ||||||||||| | ||||| |||||||||||||||||| |||||||| |||||||||||||||||    
T  41799098 ttgtagtattttcttgacattttggttgtactacttttacatttgcacagttgggcttatttatgacatttacgttatttttcgttaaaattgtgtttct 41798999  T
Q  266 aaa 268  Q
    |||    
T  41798998 aaa 41798996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 222 - 268
Target Start/End: Complemental strand, 44552554 - 44552508
Alignment:
Q  222 ttatttatgacatttacattattttttgttaaaattgtgtttctaaa 268  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||    
T  44552554 ttatttatgacatttacattatttttcgttaaaattgtgtttctaaa 44552508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 289 - 339
Target Start/End: Complemental strand, 41798988 - 41798938
Alignment:
Q  289 gttctctaaattatgagatctgaatgaatcaatgaatggttgtaccaaaat 339  Q
    ||||||||||||||  | ||||  |||||||||||||||||||||||||||    
T  41798988 gttctctaaattattcgttctgtttgaatcaatgaatggttgtaccaaaat 41798938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 289 - 339
Target Start/End: Complemental strand, 44552500 - 44552450
Alignment:
Q  289 gttctctaaattatgagatctgaatgaatcaatgaatggttgtaccaaaat 339  Q
    ||||||||||||||  | ||||  |||||||||||||||||||||||||||    
T  44552500 gttctctaaattattcgttctggttgaatcaatgaatggttgtaccaaaat 44552450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 77; Significance: 1e-35; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 243 - 339
Target Start/End: Original strand, 6705642 - 6705738
Alignment:
Q  243 ttttttgttaaaattgtgtttctaaattattattgaatgactgcatgttctctaaattatgagatctgaatgaatcaatgaatggttgtaccaaaat 339  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| | || ||||||||||||||||||||||||||||    
T  6705642 tttttcgttaaaattgtgtttctaaattattattgaatgactgcatgatctctaaattatgagttatggatgaatcaatgaatggttgtaccaaaat 6705738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 1 - 127
Target Start/End: Original strand, 6705476 - 6705606
Alignment:
Q  1 gattccagaggtggtttcaaatccactctttttcagcatcttggagggcatccagatcaatt----atagtgtgtttgacgatcatcaggttccgaggag 96  Q
    |||| ||||||||||||||||||||||||| ||  |||| ||||||||| | | || | |||    |||  ||||||||| |||| |||||| |||||||    
T  6705476 gatttcagaggtggtttcaaatccactcttctttggcattttggagggccttcggaccgattgattataacgtgtttgaccatcagcaggtttcgaggag 6705575  T
Q  97 gaggtctaggagtcatagtccacaggagcag 127  Q
    ||||||||||||||||||||| || ||||||    
T  6705576 gaggtctaggagtcatagtccgcatgagcag 6705606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 73; Significance: 3e-33; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 2 - 126
Target Start/End: Original strand, 942585 - 942709
Alignment:
Q  2 attccagaggtggtttcaaatccactctttttcagcatcttggagggcatccagatcaattatagtgtgtttgacgatcatcaggttccgaggaggaggt 101  Q
    ||||||||||||||||  ||||||||||| |||| |||||| |||||| |||||| | ||||||| |||||||||||||| || ||||||||||||||||    
T  942585 attccagaggtggtttttaatccactcttcttcaacatcttagagggcctccagaccgattatagcgtgtttgacgatcaacaagttccgaggaggaggt 942684  T
Q  102 ctaggagtcatagtccacaggagca 126  Q
    |||||||||||||||  ||||||||    
T  942685 ctaggagtcatagtctgcaggagca 942709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 167 - 268
Target Start/End: Original strand, 942773 - 942875
Alignment:
Q  167 ttgtagtattt-cttgacattttggttgtactatatttacatttgcgcggttggccttatttatgacatttacattattttttgttaaaattgtgtttct 265  Q
    ||||||||||| ||||||||| |||||||||||  ||||||||||| ||||||| |||||||||||||||||| ||||||||  |||||| |||||||||    
T  942773 ttgtagtattttcttgacattatggttgtactacttttacatttgcacggttgggcttatttatgacatttacgttatttttcattaaaaatgtgtttct 942872  T
Q  266 aaa 268  Q
    |||    
T  942873 aaa 942875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0262 (Bit Score: 68; Significance: 2e-30; HSPs: 2)
Name: scaffold0262
Description:

Target: scaffold0262; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 182 - 305
Target Start/End: Complemental strand, 8739 - 8617
Alignment:
Q  182 acattttggttgtactatatttacatttgcgcggttggccttatttatgacatttacattattttttgttaaaattgtgtttctaaattattattgaatg 281  Q
    ||||||||||||||||||||||||||||| |||||||  |||||||||||||||||| ||| |||| | ||| |||||||||||||||||| | ||||||    
T  8739 acattttggttgtactatatttacatttgtgcggttgcacttatttatgacatttacgtta-ttttcggtaatattgtgtttctaaattatgaatgaatg 8641  T
Q  282 actgcatgttctctaaattatgag 305  Q
    | |||||||  |||||||||||||    
T  8640 aatgcatgtgttctaaattatgag 8617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0262; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 9 - 49
Target Start/End: Complemental strand, 8915 - 8875
Alignment:
Q  9 aggtggtttcaaatccactctttttcagcatcttggagggc 49  Q
    |||||||||||||||||||||| ||| |||| |||||||||    
T  8915 aggtggtttcaaatccactcttcttcggcattttggagggc 8875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 63; Significance: 2e-27; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 103
Target Start/End: Original strand, 9387256 - 9387358
Alignment:
Q  1 gattccagaggtggtttcaaatccactctttttcagcatcttggagggcatccagatcaattatagtgtgtttgacgatcatcaggttccgaggaggagg 100  Q
    |||||||||||||||||| |||  |||||| ||||||||||| ||||||||||||| | ||||||| ||||||||| |||| ||||||||||||||||||    
T  9387256 gattccagaggtggtttctaatttactcttcttcagcatcttagagggcatccagaccgattatagcgtgtttgacaatcaacaggttccgaggaggagg 9387355  T
Q  101 tct 103  Q
    |||    
T  9387356 tct 9387358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 192 - 339
Target Start/End: Original strand, 9387434 - 9387568
Alignment:
Q  192 tgtactatatttacatttgcgcggttggccttatttatgacatttacattattttttgttaaaattgtgtttctaaattattattgaatgactgcatgtt 291  Q
    |||||||  ||||||||||| || |||| |||||||||||||||||| |||||||| ||||||||||||||||||||  ||||||            |||    
T  9387434 tgtactacttttacatttgcacgattgggcttatttatgacatttacgttatttttcgttaaaattgtgtttctaaa--attatt-----------cgtt 9387520  T
Q  292 ctctaaattatgagatctgaatgaatcaatgaatggttgtaccaaaat 339  Q
    |||||||||||||| ||||  ||||||||| |||||||||||||||||    
T  9387521 ctctaaattatgagttctggttgaatcaattaatggttgtaccaaaat 9387568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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