View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8980_low_38 (Length: 338)
Name: NF8980_low_38
Description: NF8980
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8980_low_38 |
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Alignment Details
Target: chr7 (Bit Score: 311; Significance: 1e-175; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 1 - 331
Target Start/End: Original strand, 42943951 - 42944281
Alignment:
| Q |
1 |
aaaaactagtaaaaagataacaatgacataaaaaagtgaaaatatgagataagtatagaattaaatcttagatagagagagatagagaaatgcaagtggc |
100 |
Q |
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||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
42943951 |
aaaaactagtaaaaagagaacaattccataaaaaagtgaaaatatgagataagtatagaatgaaatcttagatagagagagatagagaaatgcaagtggc |
42944050 |
T |
|
| Q |
101 |
aattccttaagtgtatattactgaaaacagagaaaagaacttaaatatcttaccttggaaaatgcagtgatgtcagaccctaaagtttctattctcatct |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42944051 |
aattccttaagtgtatattactgaaaacagagaaaagaacttaaatatcttaccttggaaaatgcagtgatgtcagaccctaaagtttctattctcatct |
42944150 |
T |
|
| Q |
201 |
cattgaaagggcattaaaccatctgtccctagtccatcagaccattcttcttatattataaaattcaaatccctatgtctatattttcccaccaccatcc |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42944151 |
cattgaaagggcattaaaccatctgtccctagtccatcagaccattcttcttatattataaaattcaaatccctatgtctatattttcccaccaccatcc |
42944250 |
T |
|
| Q |
301 |
gtggtagcagtaccataccaacaccatactc |
331 |
Q |
| |
|
||||||||||||||||||||| ||||||||| |
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| T |
42944251 |
gtggtagcagtaccataccaataccatactc |
42944281 |
T |
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