View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8980_low_42 (Length: 319)
Name: NF8980_low_42
Description: NF8980
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8980_low_42 |
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Alignment Details
Target: chr4 (Bit Score: 282; Significance: 1e-158; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 17 - 310
Target Start/End: Original strand, 53029488 - 53029781
Alignment:
| Q |
17 |
ctttcttgactacagcattgtcatcagtaatcccatgcttcagtttcacccaacgcactttatgcgaatagagaatcttccctaagggccaaggaagatc |
116 |
Q |
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| T |
53029488 |
ctttcttgactacagcattgtcatcagtaatcccatgcttcagtttcacccaacgcactttatgcgaatagagaatcttccctaagggccaaggaagatc |
53029587 |
T |
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| Q |
117 |
agaataatagatactattagcagaagaaccatcagatccaacccaaagttcatatgtaagtgcatcatgaagccaagttgtgagaattgctttgattgat |
216 |
Q |
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| T |
53029588 |
agaataatagatactattagcagaagaaccatcagatccaacccaaagttcatatgtaagtgcatcatgaagccaagttgtgagaattgctttgattgat |
53029687 |
T |
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| Q |
217 |
atccaatcaggaagtgaagaaacttcactatctaaatcaacaacaccaacatctttcttcaaacactcaattatctcttcattctcagtattat |
310 |
Q |
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| T |
53029688 |
atccaatcaggaagtgaagaaacttcactatctaaatcaacaacaccaacatctttcttcaaacactcaattatcccttcaatctcattattat |
53029781 |
T |
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Target: chr2 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 103 - 255
Target Start/End: Complemental strand, 16014424 - 16014272
Alignment:
| Q |
103 |
ggccaaggaagatcagaataatagatactattagcagaagaaccatcagatccaacccaaagttcatatgtaagtgcatcatgaagccaagttgtgagaa |
202 |
Q |
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||||| |||||||||||||||||||| |||| |||||| ||| ||| ||| ||||||||||| || |||||||||| ||||||||||||||| | |
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| T |
16014424 |
ggccatggaagatcagaataatagatgctataagcagatgaagggtcacttcccacccaaagttcgtactcaagtgcatcagcaagccaagttgtgagca |
16014325 |
T |
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| Q |
203 |
ttgctttgattgatatccaatcaggaagtgaagaaacttcactatctaaatca |
255 |
Q |
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| T |
16014324 |
tcaccttggttggtatccattcagggagtgaagatacaccagtatctaaatca |
16014272 |
T |
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