View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8980_low_43 (Length: 298)

Name: NF8980_low_43
Description: NF8980
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8980_low_43
NF8980_low_43
[»] chr1 (7 HSPs)
chr1 (201-267)||(31066479-31066545)
chr1 (200-267)||(41438615-41438681)
chr1 (198-266)||(24106967-24107034)
chr1 (198-279)||(16517383-16517462)
chr1 (198-267)||(23933836-23933904)
chr1 (196-254)||(14746840-14746897)
chr1 (238-267)||(27282074-27282103)
[»] chr8 (6 HSPs)
chr8 (198-267)||(13770756-13770825)
chr8 (198-279)||(31247604-31247684)
chr8 (204-267)||(22282271-22282334)
chr8 (198-250)||(24942273-24942324)
chr8 (198-265)||(9555033-9555098)
chr8 (198-265)||(1039142-1039208)
[»] chr4 (7 HSPs)
chr4 (198-267)||(13033745-13033814)
chr4 (198-267)||(7865652-7865721)
chr4 (198-267)||(7866816-7866885)
chr4 (198-279)||(4480070-4480151)
chr4 (198-267)||(53446607-53446676)
chr4 (198-265)||(16238375-16238440)
chr4 (198-265)||(16643650-16643715)
[»] chr2 (4 HSPs)
chr2 (198-267)||(15327922-15327991)
chr2 (196-266)||(19026378-19026448)
chr2 (200-267)||(5356473-5356539)
chr2 (238-279)||(10887034-10887075)
[»] chr3 (10 HSPs)
chr3 (198-270)||(9860812-9860883)
chr3 (198-278)||(23088951-23089031)
chr3 (198-267)||(3750303-3750371)
chr3 (198-267)||(16841272-16841339)
chr3 (198-279)||(3024559-3024641)
chr3 (198-267)||(15204008-15204078)
chr3 (198-267)||(15243029-15243099)
chr3 (212-267)||(12901417-12901474)
chr3 (198-267)||(36602649-36602718)
chr3 (201-265)||(10848340-10848402)
[»] chr6 (9 HSPs)
chr6 (210-267)||(12936391-12936448)
chr6 (198-267)||(7099387-7099457)
chr6 (198-267)||(8795173-8795243)
chr6 (205-267)||(7412325-7412385)
chr6 (210-267)||(12910729-12910786)
chr6 (216-279)||(31344360-31344421)
chr6 (238-267)||(6109615-6109644)
chr6 (238-270)||(17728374-17728406)
chr6 (238-266)||(22607699-22607727)
[»] chr5 (3 HSPs)
chr5 (198-267)||(23927242-23927311)
chr5 (198-267)||(31477533-31477602)
chr5 (198-265)||(31022523-31022587)
[»] scaffold0043 (1 HSPs)
scaffold0043 (200-267)||(56758-56825)
[»] chr7 (2 HSPs)
chr7 (198-269)||(5632792-5632864)
chr7 (240-279)||(20093491-20093530)
[»] scaffold0023 (1 HSPs)
scaffold0023 (199-265)||(87365-87431)
[»] scaffold1401 (1 HSPs)
scaffold1401 (198-265)||(802-867)
[»] scaffold0062 (1 HSPs)
scaffold0062 (243-279)||(10696-10732)


Alignment Details
Target: chr1 (Bit Score: 63; Significance: 2e-27; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 201 - 267
Target Start/End: Original strand, 31066479 - 31066545
Alignment:
Q  201 ggtagaatctctttcactctcaaaccccccattctgaacctctactgacttgagcgtcggagtgtct 267  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  31066479 ggtagaatctctttcactctcaaacccctcattctgaacctctactgacttgagcgtcggagtgtct 31066545  T

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Target: chr1; HSP #2
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 200 - 267
Target Start/End: Complemental strand, 41438681 - 41438615
Alignment:
Q  200 aggtagaatctctttcactctcaaaccccccattctgaacctctactgacttgagcgtcggagtgtct 267  Q
    ||||||||||||| |||||||||||||||| ||||||||||||||||||||| |||||||||||||||    
T  41438681 aggtagaatctctctcactctcaaaccccc-attctgaacctctactgacttaagcgtcggagtgtct 41438615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 198 - 266
Target Start/End: Original strand, 24106967 - 24107034
Alignment:
Q  198 caaggtagaatctctttcactctcaaaccccccattctgaacctctactgacttgagcgtcggagtgtc 266  Q
    ||||||||||| ||||||||| || || ||||||||||  |||||||||||||||||||||||||||||    
T  24106967 caaggtagaatttctttcact-tctaaacccccattcttgacctctactgacttgagcgtcggagtgtc 24107034  T

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Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 198 - 279
Target Start/End: Complemental strand, 16517462 - 16517383
Alignment:
Q  198 caaggtagaatctctttcactctcaaaccccccattctgaacctctactgacttgagcgtcggagtgtctacatatacacac 279  Q
    ||||||||||||||| | ||||| |||||||| ||||||||| |||||||||||||||||| || |||||||| || |||||    
T  16517462 caaggtagaatctctcttactctaaaaccccc-attctgaac-tctactgacttgagcgtcagaatgtctacagatgcacac 16517383  T

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Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 198 - 267
Target Start/End: Original strand, 23933836 - 23933904
Alignment:
Q  198 caaggtagaatctctttcactctcaaaccccccattctgaacctctactgacttgagcgtcggagtgtct 267  Q
    ||||||||||||| ||||| |||||||||||  ||| |||||||||| ||||||||||| ||||||||||    
T  23933836 caaggtagaatctttttcattctcaaacccct-attttgaacctctattgacttgagcgacggagtgtct 23933904  T

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Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 196 - 254
Target Start/End: Original strand, 14746840 - 14746897
Alignment:
Q  196 ttcaaggtagaatctctttcactctcaaaccccccattctgaacctctactgacttgag 254  Q
    ||||||||||||||||||||||| || || |||| ||| |||| |||||||||||||||    
T  14746840 ttcaaggtagaatctctttcact-tctaaacccctattatgaaactctactgacttgag 14746897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 238 - 267
Target Start/End: Complemental strand, 27282103 - 27282074
Alignment:
Q  238 acctctactgacttgagcgtcggagtgtct 267  Q
    ||||||||||||||||||||||||||||||    
T  27282103 acctctactgacttgagcgtcggagtgtct 27282074  T

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Target: chr8 (Bit Score: 62; Significance: 8e-27; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 198 - 267
Target Start/End: Original strand, 13770756 - 13770825
Alignment:
Q  198 caaggtagaatctctttcactctcaaaccccccattctgaacctctactgacttgagcgtcggagtgtct 267  Q
    ||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||    
T  13770756 caaggtagaatctctttcattctcaaaccccccattctaaacctctactgacttgagcgtcggagtgtct 13770825  T

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Target: chr8; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 198 - 279
Target Start/End: Original strand, 31247604 - 31247684
Alignment:
Q  198 caaggtagaatctctttcactctcaaaccccccattctgaacctctactgacttgagcgtcggagtgtctacatatacacac 279  Q
    ||||||||||||||||||||| || || ||||||||||||||||||||||||||||| ||| |||||||||||  |||||||    
T  31247604 caaggtagaatctctttcact-tctaatcccccattctgaacctctactgacttgagtgtcagagtgtctacaggtacacac 31247684  T

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Target: chr8; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 204 - 267
Target Start/End: Original strand, 22282271 - 22282334
Alignment:
Q  204 agaatctctttcactctcaaaccccccattctgaacctctactgacttgagcgtcggagtgtct 267  Q
    ||||| ||| ||||||||||| ||| ||||||||||||||||||||||||||||| ||||||||    
T  22282271 agaatatctatcactctcaaatccctcattctgaacctctactgacttgagcgtcagagtgtct 22282334  T

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Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 198 - 250
Target Start/End: Complemental strand, 24942324 - 24942273
Alignment:
Q  198 caaggtagaatctctttcactctcaaaccccccattctgaacctctactgact 250  Q
    |||||||||||||||||||||||||||| ||||||||| ||||||||||||||    
T  24942324 caaggtagaatctctttcactctcaaac-ccccattctaaacctctactgact 24942273  T

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Target: chr8; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 198 - 265
Target Start/End: Original strand, 9555033 - 9555098
Alignment:
Q  198 caaggtagaatctctttcactctcaaaccccccattctgaacctctactgacttgagcgtcggagtgt 265  Q
    |||||| ||||||||  ||||||||||||||| ||||||||| |||||||||||||||||||||||||    
T  9555033 caaggttgaatctctcacactctcaaaccccc-attctgaac-tctactgacttgagcgtcggagtgt 9555098  T

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Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 198 - 265
Target Start/End: Original strand, 1039142 - 1039208
Alignment:
Q  198 caaggtagaatctctttcactctcaaaccccccattctgaacctctactgacttgagcgtcggagtgt 265  Q
    ||||||||||||||||||||| || ||  ||||||| |  ||||||||||||||||||||| ||||||    
T  1039142 caaggtagaatctctttcact-tctaaaaccccatttttgacctctactgacttgagcgtcagagtgt 1039208  T

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Target: chr4 (Bit Score: 58; Significance: 2e-24; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 198 - 267
Target Start/End: Original strand, 13033745 - 13033814
Alignment:
Q  198 caaggtagaatctctttcactctcaaaccccccattctgaacctctactgacttgagcgtcggagtgtct 267  Q
    ||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||| ||||||||    
T  13033745 caaggtagaatctctttcactctgaaaccccacattctgaacctctactgacttgagcgtcagagtgtct 13033814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 198 - 267
Target Start/End: Original strand, 7865652 - 7865721
Alignment:
Q  198 caaggtagaatctctttcactctcaaaccccccattctgaacctctactgacttgagcgtcggagtgtct 267  Q
    |||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||| || ||||||||    
T  7865652 caaggtagaatctctttcactctcaaaccccctattatgaacctctactgacttgagcttcagagtgtct 7865721  T

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Target: chr4; HSP #3
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 198 - 267
Target Start/End: Original strand, 7866816 - 7866885
Alignment:
Q  198 caaggtagaatctctttcactctcaaaccccccattctgaacctctactgacttgagcgtcggagtgtct 267  Q
    |||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||| || ||||||||    
T  7866816 caaggtagaatctctttcactctcaaaccccctattatgaacctctactgacttgagcttcagagtgtct 7866885  T

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Target: chr4; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 198 - 279
Target Start/End: Complemental strand, 4480151 - 4480070
Alignment:
Q  198 caaggtagaatctctttcactctcaaaccccccattctgaacctctactgacttgagcgtcggagtgtctacatatacacac 279  Q
    ||||| ||||||| ||||||||| |||||| ||||| |||||||||||| |||||||||||||||||||||||  |||||||    
T  4480151 caagggagaatctttttcactctaaaaccctccattatgaacctctactaacttgagcgtcggagtgtctacaggtacacac 4480070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 198 - 267
Target Start/End: Complemental strand, 53446676 - 53446607
Alignment:
Q  198 caaggtagaatctctttcactctcaaaccccccattctgaacctctactgacttgagcgtcggagtgtct 267  Q
    ||||||||||||| |||||||||||||||||| ||||||||| ||||||||||||||  |||||||||||    
T  53446676 caaggtagaatctttttcactctcaaacccccaattctgaacatctactgacttgagtatcggagtgtct 53446607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 198 - 265
Target Start/End: Complemental strand, 16238440 - 16238375
Alignment:
Q  198 caaggtagaatctctttcactctcaaaccccccattctgaacctctactgacttgagcgtcggagtgt 265  Q
    |||||||||||||||  ||||||||||||| | ||||||||| |||||||||||||||||| ||||||    
T  16238440 caaggtagaatctctcacactctcaaaccctc-attctgaac-tctactgacttgagcgtcagagtgt 16238375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 198 - 265
Target Start/End: Original strand, 16643650 - 16643715
Alignment:
Q  198 caaggtagaatctctttcactctcaaaccccccattctgaacctctactgacttgagcgtcggagtgt 265  Q
    ||||| |||||||||  |||||||||||||||  |||||||| |||||||||||||||||| ||||||    
T  16643650 caagggagaatctctcacactctcaaacccccg-ttctgaac-tctactgacttgagcgtcagagtgt 16643715  T

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Target: chr2 (Bit Score: 58; Significance: 2e-24; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 198 - 267
Target Start/End: Original strand, 15327922 - 15327991
Alignment:
Q  198 caaggtagaatctctttcactctcaaaccccccattctgaacctctactgacttgagcgtcggagtgtct 267  Q
    |||||||||||||  |||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  15327922 caaggtagaatcttcttcactctgaaaccccccattctgaacctctactgacttgagcgtcggagtgtct 15327991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 196 - 266
Target Start/End: Complemental strand, 19026448 - 19026378
Alignment:
Q  196 ttcaaggtagaatctctttcactctcaaaccccccattctgaacctctactgacttgagcgtcggagtgtc 266  Q
    |||||||||||||||||||||||||||||| || ||||||| ||||||||| |||||||| ||||||||||    
T  19026448 ttcaaggtagaatctctttcactctcaaactcctcattctggacctctacttacttgagcatcggagtgtc 19026378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 200 - 267
Target Start/End: Complemental strand, 5356539 - 5356473
Alignment:
Q  200 aggtagaatctctttcactctcaaaccccccattctgaacctctactgacttgagcgtcggagtgtct 267  Q
    ||||||||||||||||||| || || |||||||| |  ||||||||||||| ||||||||||||||||    
T  5356539 aggtagaatctctttcact-tctaaacccccatttttgacctctactgactggagcgtcggagtgtct 5356473  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 238 - 279
Target Start/End: Original strand, 10887034 - 10887075
Alignment:
Q  238 acctctactgacttgagcgtcggagtgtctacatatacacac 279  Q
    |||||||||||||||||| ||||||||||| ||| |||||||    
T  10887034 acctctactgacttgagcatcggagtgtctgcatgtacacac 10887075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 53; Significance: 2e-21; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 198 - 270
Target Start/End: Original strand, 9860812 - 9860883
Alignment:
Q  198 caaggtagaatctctttcactctcaaaccccccattctgaacctctactgacttgagcgtcggagtgtctaca 270  Q
    ||||||| ||||||||||||| ||||| ||| |||||||||||||||||||||||||||||||||||||||||    
T  9860812 caaggtataatctctttcact-tcaaaaccctcattctgaacctctactgacttgagcgtcggagtgtctaca 9860883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 198 - 278
Target Start/End: Original strand, 23088951 - 23089031
Alignment:
Q  198 caaggtagaatctctttcactctcaaaccccccattctgaacctctactgacttgagcgtcggagtgtctacatatacaca 278  Q
    |||||||||||||||||||||||||||||||  ||||| ||||||||||||||||||| ||||||||| | ||| ||||||    
T  23088951 caaggtagaatctctttcactctcaaaccccatattctaaacctctactgacttgagcatcggagtgtttgcatgtacaca 23089031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 198 - 267
Target Start/End: Original strand, 3750303 - 3750371
Alignment:
Q  198 caaggtagaatctctttcactctcaaaccccccattctgaacctctactgacttgagcgtcggagtgtct 267  Q
    ||||||||||||||||||||| || || ||||||||||  |||||||||||||||||||||| |||||||    
T  3750303 caaggtagaatctctttcact-tctaaacccccattcttgacctctactgacttgagcgtcgaagtgtct 3750371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 198 - 267
Target Start/End: Original strand, 16841272 - 16841339
Alignment:
Q  198 caaggtagaatctctttcactctcaaaccccccattctgaacctctactgacttgagcgtcggagtgtct 267  Q
    ||||||||||||||   ||||||||||||||| ||||||||| |||||||||||||||||||||||||||    
T  16841272 caaggtagaatctcacacactctcaaaccccc-attctgaac-tctactgacttgagcgtcggagtgtct 16841339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 198 - 279
Target Start/End: Complemental strand, 3024641 - 3024559
Alignment:
Q  198 caaggtagaatctctttcactctcaaac-cccccattctgaacctctactgacttgagcgtcggagtgtctacatatacacac 279  Q
    |||||||||||||  |||||||| |||| |||||||| ||||||||||||||||||||| || | |||||| ||| |||||||    
T  3024641 caaggtagaatcttcttcactcttaaactcccccattttgaacctctactgacttgagcatcagggtgtctgcatgtacacac 3024559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 198 - 267
Target Start/End: Original strand, 15204008 - 15204078
Alignment:
Q  198 caaggtagaatctctttcac-tctcaaaccccccattctgaacctctactgacttgagcgtcggagtgtct 267  Q
    |||||||||||||||||  | ||  ||||||| ||||||||||||||||| ||||||||||| ||||||||    
T  15204008 caaggtagaatctcttttccatccaaaacccctcattctgaacctctacttacttgagcgtcagagtgtct 15204078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 198 - 267
Target Start/End: Original strand, 15243029 - 15243099
Alignment:
Q  198 caaggtagaatctctttcac-tctcaaaccccccattctgaacctctactgacttgagcgtcggagtgtct 267  Q
    |||||||||||||||||  | ||  ||||||| |||| |||||||||||| ||||||||||||||||||||    
T  15243029 caaggtagaatctcttttccatccaaaacccctcattatgaacctctacttacttgagcgtcggagtgtct 15243099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 212 - 267
Target Start/End: Original strand, 12901417 - 12901474
Alignment:
Q  212 tttcactctcaaacccccc--attctgaacctctactgacttgagcgtcggagtgtct 267  Q
    ||||||||| |||||||||  ||||  |||||||||| ||||||||||||||||||||    
T  12901417 tttcactctaaaacccccctcattcataacctctacttacttgagcgtcggagtgtct 12901474  T

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Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 198 - 267
Target Start/End: Original strand, 36602649 - 36602718
Alignment:
Q  198 caaggtagaatctcttt-cactctcaaaccccccattctgaacctctactgacttgagcgtcggagtgtct 267  Q
    |||| |||||||||||| | |||| |||||| | |||||||||||||||| |||||||||||| |||||||    
T  36602649 caagatagaatctcttttccctctaaaaccctc-attctgaacctctacttacttgagcgtcgcagtgtct 36602718  T

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Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 201 - 265
Target Start/End: Original strand, 10848340 - 10848402
Alignment:
Q  201 ggtagaatctctttcactctcaaaccccccattctgaacctctactgacttgagcgtcggagtgt 265  Q
    ||||||||||||  |||||||||| |||||||||||||  ||||||||||| |||||| ||||||    
T  10848340 ggtagaatctctcacactctcaaa-cccccattctgaa-ttctactgacttaagcgtcagagtgt 10848402  T

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Target: chr6 (Bit Score: 50; Significance: 1e-19; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 210 - 267
Target Start/End: Original strand, 12936391 - 12936448
Alignment:
Q  210 tctttcactctcaaaccccccattctgaacctctactgacttgagcgtcggagtgtct 267  Q
    |||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||    
T  12936391 tctttcactctcaaacgccccattctgaacctctactaacttgagcgtcggagtgtct 12936448  T

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Target: chr6; HSP #2
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 198 - 267
Target Start/End: Original strand, 7099387 - 7099457
Alignment:
Q  198 caaggtagaatctcttt-cactctcaaaccccccattctgaacctctactgacttgagcgtcggagtgtct 267  Q
    ||||||||| ||||||| ||||||||||||||||||| |||||||||||||||||||||||  ||||||||    
T  7099387 caaggtagattctcttttcactctcaaaccccccattatgaacctctactgacttgagcgttagagtgtct 7099457  T

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Target: chr6; HSP #3
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 198 - 267
Target Start/End: Complemental strand, 8795243 - 8795173
Alignment:
Q  198 caaggtagaatctcttt-cactctcaaaccccccattctgaacctctactgacttgagcgtcggagtgtct 267  Q
    ||||||||| ||||||| ||||||||||||||||||| |||||||||||||||||||||||  ||||||||    
T  8795243 caaggtagattctcttttcactctcaaaccccccattatgaacctctactgacttgagcgttagagtgtct 8795173  T

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Target: chr6; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 205 - 267
Target Start/End: Complemental strand, 7412385 - 7412325
Alignment:
Q  205 gaatctctttcactctcaaaccccccattctgaacctctactgacttgagcgtcggagtgtct 267  Q
    |||||||||| |||||||||||||| ||||||||| |||||||||||||||||||||||||||    
T  7412385 gaatctcttttactctcaaaccccc-attctgaac-tctactgacttgagcgtcggagtgtct 7412325  T

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Target: chr6; HSP #5
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 210 - 267
Target Start/End: Original strand, 12910729 - 12910786
Alignment:
Q  210 tctttcactctcaaaccccccattctgaacctctactgacttgagcgtcggagtgtct 267  Q
    |||||||||||||||| |||||||||||||||| ||| ||||||||||| ||||||||    
T  12910729 tctttcactctcaaacgccccattctgaacctccactaacttgagcgtcagagtgtct 12910786  T

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Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 216 - 279
Target Start/End: Original strand, 31344360 - 31344421
Alignment:
Q  216 actctcaaaccccccattctgaacctctactgacttgagcgtcggagtgtctacatatacacac 279  Q
    |||||||||||||| ||||||||| ||||||||||||||||||||||||| | ||| |||||||    
T  31344360 actctcaaaccccc-attctgaac-tctactgacttgagcgtcggagtgtatgcatgtacacac 31344421  T

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Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 238 - 267
Target Start/End: Original strand, 6109615 - 6109644
Alignment:
Q  238 acctctactgacttgagcgtcggagtgtct 267  Q
    ||||||||||||||||||||||||||||||    
T  6109615 acctctactgacttgagcgtcggagtgtct 6109644  T

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Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 238 - 270
Target Start/End: Complemental strand, 17728406 - 17728374
Alignment:
Q  238 acctctactgacttgagcgtcggagtgtctaca 270  Q
    ||||||||||||||||||||| |||||||||||    
T  17728406 acctctactgacttgagcgtcagagtgtctaca 17728374  T

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Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 238 - 266
Target Start/End: Complemental strand, 22607727 - 22607699
Alignment:
Q  238 acctctactgacttgagcgtcggagtgtc 266  Q
    |||||||||||||||||||||||||||||    
T  22607727 acctctactgacttgagcgtcggagtgtc 22607699  T

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Target: chr5 (Bit Score: 50; Significance: 1e-19; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 198 - 267
Target Start/End: Original strand, 23927242 - 23927311
Alignment:
Q  198 caaggtagaatctctttcactctcaaaccccccattctgaacctctactgacttgagcgtcggagtgtct 267  Q
    ||||||||||| ||||||||||||||||||  ||||  ||||||||||||||||||||||||||||||||    
T  23927242 caaggtagaatatctttcactctcaaacccttcattacgaacctctactgacttgagcgtcggagtgtct 23927311  T

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Target: chr5; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 198 - 267
Target Start/End: Original strand, 31477533 - 31477602
Alignment:
Q  198 caaggtagaatctctttcactctcaaaccccccattctgaacctctactgacttgagcgtcggagtgtct 267  Q
    |||||||||||   ||||||||||||||||| |||| |||||||||||| ||||||||||||||||||||    
T  31477533 caaggtagaataaatttcactctcaaacccctcattttgaacctctacttacttgagcgtcggagtgtct 31477602  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 198 - 265
Target Start/End: Original strand, 31022523 - 31022587
Alignment:
Q  198 caaggtagaatctctttcactctcaaaccccccattctgaacctctactgacttgagcgtcggagtgt 265  Q
    |||||||||||||||  | ||||||||||||||||||| ||   ||||| |||||||| |||||||||    
T  31022523 caaggtagaatctctcacgctctcaaaccccccattctaaa---ctactaacttgagcatcggagtgt 31022587  T

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Target: scaffold0043 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: scaffold0043
Description:

Target: scaffold0043; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 200 - 267
Target Start/End: Original strand, 56758 - 56825
Alignment:
Q  200 aggtagaatctctttcactctcaaaccccccattctgaacctctactgacttgagcgtcggagtgtct 267  Q
    |||||||||||  |||||||| |||||||||||| ||||||||||||||||||||||||| |||||||    
T  56758 aggtagaatcttcttcactcttaaaccccccattttgaacctctactgacttgagcgtcgaagtgtct 56825  T

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Target: chr7 (Bit Score: 45; Significance: 1e-16; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 198 - 269
Target Start/End: Original strand, 5632792 - 5632864
Alignment:
Q  198 caaggtagaatctctttcactctcaaaccccc-cattctgaacctctactgacttgagcgtcggagtgtctac 269  Q
    ||||||||||||| ||||||||  |||||| | ||||||||||||||||||||||||||||| ||||||||||    
T  5632792 caaggtagaatctttttcactcctaaacccactcattctgaacctctactgacttgagcgtcagagtgtctac 5632864  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 240 - 279
Target Start/End: Complemental strand, 20093530 - 20093491
Alignment:
Q  240 ctctactgacttgagcgtcggagtgtctacatatacacac 279  Q
    |||||||||||||||||||||||||||||||  |||||||    
T  20093530 ctctactgacttgagcgtcggagtgtctacaggtacacac 20093491  T

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Target: scaffold0023 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0023
Description:

Target: scaffold0023; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 199 - 265
Target Start/End: Complemental strand, 87431 - 87365
Alignment:
Q  199 aaggtagaatctctttcactctcaaaccccccattctgaacctctactgacttgagcgtcggagtgt 265  Q
    ||||||||||||  |||||||| ||||||| |||| |||||||||||| ||||||||||||||||||    
T  87431 aaggtagaatcttcttcactctaaaaccccacattatgaacctctactaacttgagcgtcggagtgt 87365  T

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Target: scaffold1401 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold1401
Description:

Target: scaffold1401; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 198 - 265
Target Start/End: Complemental strand, 867 - 802
Alignment:
Q  198 caaggtagaatctctttcactctcaaaccccccattctgaacctctactgacttgagcgtcggagtgt 265  Q
    |||||||||||||||  ||||||||||||| | ||||||||| |||||||||||||||||| ||||||    
T  867 caaggtagaatctctcacactctcaaaccctc-attctgaac-tctactgacttgagcgtcagagtgt 802  T

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Target: scaffold0062 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0062
Description:

Target: scaffold0062; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 243 - 279
Target Start/End: Original strand, 10696 - 10732
Alignment:
Q  243 tactgacttgagcgtcggagtgtctacatatacacac 279  Q
    ||||||||||||||||||||||||||||  |||||||    
T  10696 tactgacttgagcgtcggagtgtctacaggtacacac 10732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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