View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8980_low_47 (Length: 295)
Name: NF8980_low_47
Description: NF8980
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8980_low_47 |
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Alignment Details
Target: chr5 (Bit Score: 255; Significance: 1e-142; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 1 - 279
Target Start/End: Complemental strand, 38815718 - 38815437
Alignment:
| Q |
1 |
ttagactcaacccaaactctaagatgatatcggagtctatcctagatctgttgttggactgcccgcattgtccatgcccctagcccaatttatgccaggt |
100 |
Q |
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| T |
38815718 |
ttagactcaacccaaactctaagatgatatcggagtctatcctagatctgttgttggactgcccgcattgtccatgcccctagtccaatttatgccaggt |
38815619 |
T |
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| Q |
101 |
tgtgaggcag--tgttggaaattttgccttgattgtggtctgcccctagccatcttaaatttggcttttaaatttccttcattgcagcttcgagcacctt |
198 |
Q |
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| T |
38815618 |
tgtgaggcagggtgttggaaattttgccttgattgtggtcttcccctagccatcttaaatttggcttttaaatttccttcattgcagcttcgagcacctt |
38815519 |
T |
|
| Q |
199 |
aattttgctgggtgtgagaggctgggttagtcctacacagcctagagatctaaatagccgtgaagggcctc-ttgtgtggtg |
279 |
Q |
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| T |
38815518 |
aattttgctgggtgtgagaggctgggttagtcctacacagcctagagatctaaatagccgtgaagggcctctttgtgtggtg |
38815437 |
T |
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Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 20 - 74
Target Start/End: Original strand, 25971173 - 25971227
Alignment:
| Q |
20 |
taagatgatatcggagtctatcctagatctgttgttggactgcccgcattgtcca |
74 |
Q |
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| T |
25971173 |
taagatggaatcagagcctatcctagatctgttgttggacttcccgcatcgtcca |
25971227 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 72
Target Start/End: Original strand, 18286713 - 18286766
Alignment:
| Q |
19 |
ctaagatgatatcggagtctatcctagatctgttgttggactgcccgcattgtc |
72 |
Q |
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| T |
18286713 |
ctaagatgatatcagagcctatcgtagatctgttgtcgggcttcccgcattgtc |
18286766 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 33455865 - 33455905
Alignment:
| Q |
1 |
ttagactcaacccaaactctaagatgatatcggagtctatc |
41 |
Q |
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| T |
33455865 |
ttagactcaacccaaattctaagatggtatcagagtctatc |
33455905 |
T |
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