View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8980_low_48 (Length: 295)
Name: NF8980_low_48
Description: NF8980
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8980_low_48 |
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Alignment Details
Target: chr4 (Bit Score: 80; Significance: 1e-37; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 158 - 245
Target Start/End: Original strand, 13083042 - 13083128
Alignment:
| Q |
158 |
aatcaaagatattatattaaaaacaaaagtttttcttgcaacattaccaataactaacatttgacataaattgtatcaaatttcataa |
245 |
Q |
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| T |
13083042 |
aatcaaagatattatattaaaa-caaaagtttttcttgcaacattaccaataactaacatttgacataaattgtatcaaatttcataa |
13083128 |
T |
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Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 246 - 289
Target Start/End: Original strand, 13083524 - 13083566
Alignment:
| Q |
246 |
catgtgattagaaataaattaataatatttttgtattgatgggt |
289 |
Q |
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| T |
13083524 |
catgtgattagaa-taaattaataatatttttgtattgatgggt |
13083566 |
T |
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