View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8980_low_49 (Length: 295)
Name: NF8980_low_49
Description: NF8980
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8980_low_49 |
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| [»] scaffold0110 (3 HSPs) |
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Alignment Details
Target: scaffold0110 (Bit Score: 244; Significance: 1e-135; HSPs: 3)
Name: scaffold0110
Description:
Target: scaffold0110; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 1 - 272
Target Start/End: Complemental strand, 12090 - 11819
Alignment:
| Q |
1 |
aggttttttgatgaaaacatcccaaatactagggccacgaccctctttgctagccataccctcaacttgataagcagaagttgcaactccaaacacaaaa |
100 |
Q |
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| T |
12090 |
aggttttttgatgaaaacatcccaaatactagggccacgaccctctttgctagctataccctctacttgataagcagaagttgcaactccaaacacaaac |
11991 |
T |
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| Q |
101 |
cctttaggaaaaacatctctactcaaccctccagtatcaaaatgcactgtttcaggcaccgtaaccccattaactgagctaacaagaacaattaagaaga |
200 |
Q |
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| T |
11990 |
cccttaggaaaaacatctctactcaaccctccagtatccaaatgcactgtttcaggcactgtaacccccttaactgagctaacaagaacaattaagaaga |
11891 |
T |
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| Q |
201 |
agaaaaacatggaataaaaacattgatgctgttgtgaatccaacatcaccatcttcaacaatagtgaagtga |
272 |
Q |
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| T |
11890 |
agaaaaacatggaataaaaacattgatgctgttgtgaatccaacatcaccatcttcaacaatagtgaagtga |
11819 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0110; HSP #2
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 1 - 272
Target Start/End: Complemental strand, 19827 - 19556
Alignment:
| Q |
1 |
aggttttttgatgaaaacatcccaaatactagggccacgaccctctttgctagccataccctcaacttgataagcagaagttgcaactccaaacacaaaa |
100 |
Q |
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| T |
19827 |
aggttttttgatgaaaacatcccaaatactagggccacgaccctctttgctagctataccctctacttgataagcagaagttgcaactccaaacacaaac |
19728 |
T |
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| Q |
101 |
cctttaggaaaaacatctctactcaaccctccagtatcaaaatgcactgtttcaggcaccgtaaccccattaactgagctaacaagaacaattaagaaga |
200 |
Q |
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| T |
19727 |
cccttaggaaaaacatctctactcaaccctccagtatccaaatgcactgtttcaggcactgtaacccccttaactgagctaacaagaacaattaagaaga |
19628 |
T |
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| Q |
201 |
agaaaaacatggaataaaaacattgatgctgttgtgaatccaacatcaccatcttcaacaatagtgaagtga |
272 |
Q |
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| T |
19627 |
agaaaaacatggaataaaaacattgatgctgttgtgaatccaacatcaccatcttcaacaatagtgaagtga |
19556 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0110; HSP #3
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 2 - 258
Target Start/End: Complemental strand, 27525 - 27269
Alignment:
| Q |
2 |
ggttttttgatgaaaacatcccaaatactagggccacgaccctctttgctagccataccctcaacttgataagcagaagttgcaactccaaacacaaaac |
101 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| | |
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| T |
27525 |
ggttttttgatgaaaacatcccaaatactagggccacgaccctctttgctagccataccctctacttgataagcagaagttgcaactccaaacacaaacc |
27426 |
T |
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| Q |
102 |
ctttaggaaaaacatctctactcaaccctccagtatcaaaatgcactgtttcaggcaccgtaaccccattaactgagctaacaagaacaattaagaagaa |
201 |
Q |
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| T |
27425 |
ccttaggaaaaacatctctactcaaccctccagtatccaaatgcactgtttcaggcactgtaactccattaactgaactaacaagaacaactaagaagaa |
27326 |
T |
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| Q |
202 |
gaaaaacatggaataaaaacattgatgctgttgtgaatccaacatcaccatcttcaa |
258 |
Q |
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| T |
27325 |
gaaaaacatggaatagaaacattgatgctgttgtgaatccaacatcatcatcttcaa |
27269 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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