View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8980_low_5 (Length: 656)

Name: NF8980_low_5
Description: NF8980
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8980_low_5
NF8980_low_5
[»] chr6 (8 HSPs)
chr6 (62-408)||(34384654-34385001)
chr6 (443-636)||(34384425-34384619)
chr6 (549-629)||(21404701-21404781)
chr6 (63-105)||(18367870-18367912)
chr6 (66-105)||(10294144-10294183)
chr6 (63-105)||(16488573-16488615)
chr6 (62-104)||(28862155-28862197)
chr6 (64-105)||(9195737-9195778)
[»] chr1 (5 HSPs)
chr1 (216-408)||(11036972-11037161)
chr1 (137-201)||(11037367-11037431)
chr1 (62-131)||(44482263-44482335)
chr1 (62-98)||(34371746-34371782)
chr1 (63-105)||(25934650-25934692)
[»] scaffold0036 (1 HSPs)
scaffold0036 (62-105)||(9730-9773)
[»] chr2 (4 HSPs)
chr2 (148-198)||(38458705-38458755)
chr2 (62-105)||(35056901-35056944)
chr2 (256-295)||(38458833-38458872)
chr2 (62-97)||(44860353-44860388)
[»] scaffold0168 (3 HSPs)
scaffold0168 (68-132)||(21211-21273)
scaffold0168 (68-132)||(21082-21144)
scaffold0168 (68-132)||(21340-21402)
[»] chr8 (6 HSPs)
chr8 (62-105)||(11927069-11927112)
chr8 (62-105)||(11944698-11944741)
chr8 (62-132)||(25566874-25566944)
chr8 (64-105)||(15816112-15816153)
chr8 (64-105)||(29447479-29447520)
chr8 (62-106)||(28384976-28385020)
[»] chr7 (2 HSPs)
chr7 (62-105)||(26329365-26329408)
chr7 (62-104)||(6630896-6630938)
[»] chr4 (4 HSPs)
chr4 (62-105)||(30982861-30982904)
chr4 (64-107)||(40742626-40742669)
chr4 (206-298)||(56103755-56103847)
chr4 (62-98)||(44132634-44132670)
[»] chr5 (2 HSPs)
chr5 (63-105)||(21814295-21814337)
chr5 (64-132)||(36838578-36838645)
[»] scaffold0446 (1 HSPs)
scaffold0446 (206-298)||(3221-3313)
[»] chr3 (4 HSPs)
chr3 (62-103)||(8039820-8039861)
chr3 (64-105)||(11665979-11666020)
chr3 (62-103)||(17005604-17005645)
chr3 (68-104)||(28678342-28678378)


Alignment Details
Target: chr6 (Bit Score: 297; Significance: 1e-166; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 297; E-Value: 1e-166
Query Start/End: Original strand, 62 - 408
Target Start/End: Complemental strand, 34385001 - 34384654
Alignment:
Q  62 tcagtgtaattatatgtgtcggtttcgtgttggtgtcagacacgtgtctaatccgaggagtgtccgtgctttttaggcagcaattaaaatttaaagcaac 161  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34385001 tcagtgtaattatatgtgtcggtttcgtgttggtgtcagacacgtgtctaatccgaggagtgtccgtgctttttaggcagcaattaaaatttaaagcaac 34384902  T
Q  162 cataaaactcaaaatcactaattggcagcaaatcaaaaaaccccccaaaattagaaaccctaatatccaaaatcacaacttatcagtaaatcaatcaata 261  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34384901 cataaaactcaaaatcactaattggcagcaaatcaaaaaaccccccaaaattagaaaccctaatatccaaaatcacaacttatcagtaaatcaatcaata 34384802  T
Q  262 tataaagatgtgtattatgattcactaacctttcaagactgagcaagctaatatggagcgtggttgatgcgagattctgtgaac-nnnnnnnnnnnnnga 360  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||              ||    
T  34384801 tataaagatgtgtattatgattcactaacctttcaagactgagcaagctaatatggagcgtggttgatgcgagattctgtgaacaaaaaaaaaaaaaaga 34384702  T
Q  361 ttgtaaagaaacacattgatttagtgtgattaagggtttgatttcatt 408  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||    
T  34384701 ttgtaaagaaacacattgatttagtgtgatttagggtttgatttcatt 34384654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 443 - 636
Target Start/End: Complemental strand, 34384619 - 34384425
Alignment:
Q  443 caattcagaggttttaaaccctaatcctcaaataacataagaaattgatcaaaggaatgccaac-tcatctaaaaatcactacaattaaaagcgattttt 541  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  34384619 caattcagaggttttaaaccctaatcctcaaataacataagaaattgatcaaaggaatgccaacctcatctaaaaatcactacaattaaaagcgattttt 34384520  T
Q  542 gtagtggtgttagccaaacataaattatgtataaacataaattacgtgctagtttgcgagggaatagacaatgcaaatcaattcatctttagttt 636  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34384519 gtagtggtgttagccaaacataaattatgtataaacataaattacgtgctagtttgcgagggaatagacaatgcaaatcaattcatctttagttt 34384425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 549 - 629
Target Start/End: Original strand, 21404701 - 21404781
Alignment:
Q  549 tgttagccaaacataaattatgtataaacataaattacgtgctagtttgcgagggaatagacaatgcaaatcaattcatct 629  Q
    |||||| || |||||||||||| ||||||||||||||| ||||| |||| |||| |||||||||| | | |||||||||||    
T  21404701 tgttagtcatacataaattatgcataaacataaattacatgctactttgtgaggcaatagacaatactagtcaattcatct 21404781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 63 - 105
Target Start/End: Original strand, 18367870 - 18367912
Alignment:
Q  63 cagtgtaattatatgtgtcggtttcgtgttggtgtcagacacg 105  Q
    |||||||||||||||||||||| |||||| |||||||||||||    
T  18367870 cagtgtaattatatgtgtcggtgtcgtgtcggtgtcagacacg 18367912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 66 - 105
Target Start/End: Original strand, 10294144 - 10294183
Alignment:
Q  66 tgtaattatatgtgtcggtttcgtgttggtgtcagacacg 105  Q
    ||||||||||||||||||| ||||||||||||| ||||||    
T  10294144 tgtaattatatgtgtcggtgtcgtgttggtgtcggacacg 10294183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 63 - 105
Target Start/End: Complemental strand, 16488615 - 16488573
Alignment:
Q  63 cagtgtaattatatgtgtcggtttcgtgttggtgtcagacacg 105  Q
    |||||||||||||||||||||| |||||| |||||| ||||||    
T  16488615 cagtgtaattatatgtgtcggtgtcgtgtcggtgtcggacacg 16488573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 62 - 104
Target Start/End: Original strand, 28862155 - 28862197
Alignment:
Q  62 tcagtgtaattatatgtgtcggtttcgtgttggtgtcagacac 104  Q
    |||||||||| |||||||||||| ||||||||||||| |||||    
T  28862155 tcagtgtaatcatatgtgtcggtgtcgtgttggtgtctgacac 28862197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 64 - 105
Target Start/End: Complemental strand, 9195778 - 9195737
Alignment:
Q  64 agtgtaattatatgtgtcggtttcgtgttggtgtcagacacg 105  Q
    ||||||||||||||||||||| |||||| |||||| ||||||    
T  9195778 agtgtaattatatgtgtcggtgtcgtgtaggtgtctgacacg 9195737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 58; Significance: 5e-24; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 216 - 408
Target Start/End: Complemental strand, 11037161 - 11036972
Alignment:
Q  216 aaaccctaatatccaaaa-tcacaacttatcagtaaatcaatcaatatataaagatgtgtattatgattcactaacctttcaagactgagcaagctaata 314  Q
    |||||||| ||||||||| |||||||||| |||||||| ||| |||||||||||| | ||||| | ||||||||| |||||||||||||||||| ||       
T  11037161 aaaccctagtatccaaaaatcacaacttagcagtaaataaatgaatatataaagacgggtattgtaattcactaatctttcaagactgagcaagatagcg 11037062  T
Q  315 tggagcgtggttgatgc--gagattctgtgaacnnnnnnnnnnnnngattgtaaagaaacacattgatttagtgtgattaagggtttgatttcatt 408  Q
    |||| ||||||||||||   |||||||||||||              ||||||||| |||||||||||||||||||||||| ||||| ||||||||    
T  11037061 tggatcgtggttgatgcataagattctgtgaacagaaaaat------attgtaaaggaacacattgatttagtgtgattaaaggtttaatttcatt 11036972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 137 - 201
Target Start/End: Complemental strand, 11037431 - 11037367
Alignment:
Q  137 ggcagcaattaaaatttaaagcaaccataaaactcaaaatcactaattggcagcaaatcaaaaaa 201  Q
    |||||||||||||||||||||||||  ||||||||||||||||||||||||||||||| ||||||    
T  11037431 ggcagcaattaaaatttaaagcaactctaaaactcaaaatcactaattggcagcaaataaaaaaa 11037367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 62 - 131
Target Start/End: Original strand, 44482263 - 44482335
Alignment:
Q  62 tcagtgtaattatatgtgtcggtttcgtgttggtgtcagacacg---tgtctaatccgaggagtgtccgtgct 131  Q
    ||||||||||||||||||||||| |||||| |||||| ||||||      |||||||||||||||||||||||    
T  44482263 tcagtgtaattatatgtgtcggtgtcgtgtcggtgtcggacacgacacagctaatccgaggagtgtccgtgct 44482335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 62 - 98
Target Start/End: Original strand, 34371746 - 34371782
Alignment:
Q  62 tcagtgtaattatatgtgtcggtttcgtgttggtgtc 98  Q
    ||||||||||||||||||||||| |||||||||||||    
T  34371746 tcagtgtaattatatgtgtcggtgtcgtgttggtgtc 34371782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 63 - 105
Target Start/End: Original strand, 25934650 - 25934692
Alignment:
Q  63 cagtgtaattatatgtgtcggtttcgtgttggtgtcagacacg 105  Q
    |||||||||||||||||||||| |||||| |||||| ||||||    
T  25934650 cagtgtaattatatgtgtcggtatcgtgtcggtgtcggacacg 25934692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0036 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 1)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 62 - 105
Target Start/End: Complemental strand, 9773 - 9730
Alignment:
Q  62 tcagtgtaattatatgtgtcggtttcgtgttggtgtcagacacg 105  Q
    ||||||||||||||||||||||| ||||||||||||||||||||    
T  9773 tcagtgtaattatatgtgtcggtgtcgtgttggtgtcagacacg 9730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 39; Significance: 0.000000000001; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 148 - 198
Target Start/End: Original strand, 38458705 - 38458755
Alignment:
Q  148 aaatttaaagcaaccataaaactcaaaatcactaattggcagcaaatcaaa 198  Q
    ||||||||||||||| |||||| ||||||||| ||||||||||||||||||    
T  38458705 aaatttaaagcaaccctaaaacccaaaatcacaaattggcagcaaatcaaa 38458755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 62 - 105
Target Start/End: Original strand, 35056901 - 35056944
Alignment:
Q  62 tcagtgtaattatatgtgtcggtttcgtgttggtgtcagacacg 105  Q
    ||||||||||||||||||||||| |||||| |||||| ||||||    
T  35056901 tcagtgtaattatatgtgtcggtgtcgtgtcggtgtcggacacg 35056944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 256 - 295
Target Start/End: Original strand, 38458833 - 38458872
Alignment:
Q  256 tcaatatataaagatgtgtattatgattcactaacctttc 295  Q
    |||||||||||||||| ||||| |||||||||||||||||    
T  38458833 tcaatatataaagatgggtattgtgattcactaacctttc 38458872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 62 - 97
Target Start/End: Original strand, 44860353 - 44860388
Alignment:
Q  62 tcagtgtaattatatgtgtcggtttcgtgttggtgt 97  Q
    ||||||||||||||||||||||| ||||||||||||    
T  44860353 tcagtgtaattatatgtgtcggtgtcgtgttggtgt 44860388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0168 (Bit Score: 38; Significance: 0.000000000004; HSPs: 3)
Name: scaffold0168
Description:

Target: scaffold0168; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 68 - 132
Target Start/End: Original strand, 21211 - 21273
Alignment:
Q  68 taattatatgtgtcggtttcgtgttggtgtcagacacgtgtctaatccgaggagtgtccgtgctt 132  Q
    ||||||||||||||||| |||||| ||||||||||||  | |||||||||||||| |||||||||    
T  21211 taattatatgtgtcggtatcgtgtcggtgtcagacac--gcctaatccgaggagtatccgtgctt 21273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0168; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 68 - 132
Target Start/End: Original strand, 21082 - 21144
Alignment:
Q  68 taattatatgtgtcggtttcgtgttggtgtcagacacgtgtctaatccgaggagtgtccgtgctt 132  Q
    ||||||||||||||||| |||||| ||||||||||||  | |||||||||| ||| |||||||||    
T  21082 taattatatgtgtcggtatcgtgtcggtgtcagacac--gcctaatccgagaagtatccgtgctt 21144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0168; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 68 - 132
Target Start/End: Original strand, 21340 - 21402
Alignment:
Q  68 taattatatgtgtcggtttcgtgttggtgtcagacacgtgtctaatccgaggagtgtccgtgctt 132  Q
    ||||||||||||||||| |||||| ||||||||||||  | |||||||||| |||||| ||||||    
T  21340 taattatatgtgtcggtatcgtgtcggtgtcagacac--gcctaatccgagaagtgtctgtgctt 21402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 36; Significance: 0.00000000006; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 62 - 105
Target Start/End: Complemental strand, 11927112 - 11927069
Alignment:
Q  62 tcagtgtaattatatgtgtcggtttcgtgttggtgtcagacacg 105  Q
    ||||||||||||||||||||||| |||||||||||||| |||||    
T  11927112 tcagtgtaattatatgtgtcggtgtcgtgttggtgtcatacacg 11927069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 62 - 105
Target Start/End: Original strand, 11944698 - 11944741
Alignment:
Q  62 tcagtgtaattatatgtgtcggtttcgtgttggtgtcagacacg 105  Q
    ||||||||||||||||||||||| |||||||| ||||| |||||    
T  11944698 tcagtgtaattatatgtgtcggtgtcgtgttgatgtcatacacg 11944741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 62 - 132
Target Start/End: Original strand, 25566874 - 25566944
Alignment:
Q  62 tcagtgtaattatatgtgtcggtttcgtgttggtgtcagacacgtgtctaatccgaggagtgtccgtgctt 132  Q
    |||||||||||| | |||||||| ||||||||||||| |  ||  | ||||||||||||||||| ||||||    
T  25566874 tcagtgtaattacaagtgtcggtgtcgtgttggtgtccgggacacgcctaatccgaggagtgtctgtgctt 25566944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 64 - 105
Target Start/End: Complemental strand, 15816153 - 15816112
Alignment:
Q  64 agtgtaattatatgtgtcggtttcgtgttggtgtcagacacg 105  Q
    |||||||||||| |||||||| ||||||||||||| ||||||    
T  15816153 agtgtaattataagtgtcggtgtcgtgttggtgtcggacacg 15816112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 64 - 105
Target Start/End: Original strand, 29447479 - 29447520
Alignment:
Q  64 agtgtaattatatgtgtcggtttcgtgttggtgtcagacacg 105  Q
    ||||||||||||||||| ||| |||||| |||||||||||||    
T  29447479 agtgtaattatatgtgttggtgtcgtgtcggtgtcagacacg 29447520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 62 - 106
Target Start/End: Complemental strand, 28385020 - 28384976
Alignment:
Q  62 tcagtgtaattatatgtgtcggtttcgtgttggtgtcagacacgt 106  Q
    ||||||||||||||||||||||| || |||  |||||||||||||    
T  28385020 tcagtgtaattatatgtgtcggtgtcatgtcagtgtcagacacgt 28384976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 62 - 105
Target Start/End: Complemental strand, 26329408 - 26329365
Alignment:
Q  62 tcagtgtaattatatgtgtcggtttcgtgttggtgtcagacacg 105  Q
    ||||||||||||||||||||||  |||||| |||||||||||||    
T  26329408 tcagtgtaattatatgtgtcggcgtcgtgtcggtgtcagacacg 26329365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 62 - 104
Target Start/End: Complemental strand, 6630938 - 6630896
Alignment:
Q  62 tcagtgtaattatatgtgtcggtttcgtgttggtgtcagacac 104  Q
    ||||||||||||||||||||| | ||||||||||||| |||||    
T  6630938 tcagtgtaattatatgtgtcgatgtcgtgttggtgtcggacac 6630896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 32; Significance: 0.00000001; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 62 - 105
Target Start/End: Complemental strand, 30982904 - 30982861
Alignment:
Q  62 tcagtgtaattatatgtgtcggtttcgtgttggtgtcagacacg 105  Q
    |||||||||||||| |||||||| |||||| |||||||||||||    
T  30982904 tcagtgtaattataagtgtcggtgtcgtgtcggtgtcagacacg 30982861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 64 - 107
Target Start/End: Original strand, 40742626 - 40742669
Alignment:
Q  64 agtgtaattatatgtgtcggtttcgtgttggtgtcagacacgtg 107  Q
    ||||||||||||||||||| | |||||| |||||||||||||||    
T  40742626 agtgtaattatatgtgtcgatgtcgtgtcggtgtcagacacgtg 40742669  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 206 - 298
Target Start/End: Original strand, 56103755 - 56103847
Alignment:
Q  206 ccaaaattagaaaccctaatatccaaaatcac-aacttatcagtaaatcaatcaatatataaagatgtgtattatgattcactaacctttcaag 298  Q
    ||||||||||||| ||||||||||||| || | |||| | |||||||| |||||| |||||||||||  |||  ||||||||| ||||| ||||    
T  56103755 ccaaaattagaaatcctaatatccaaattctcaaactcagcagtaaat-aatcaagatataaagatggatatggtgattcactgaccttgcaag 56103847  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 62 - 98
Target Start/End: Complemental strand, 44132670 - 44132634
Alignment:
Q  62 tcagtgtaattatatgtgtcggtttcgtgttggtgtc 98  Q
    ||||| ||||||||||||||||| |||||||||||||    
T  44132670 tcagtataattatatgtgtcggtgtcgtgttggtgtc 44132634  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000006; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 63 - 105
Target Start/End: Original strand, 21814295 - 21814337
Alignment:
Q  63 cagtgtaattatatgtgtcggtttcgtgttggtgtcagacacg 105  Q
    |||||||||||||||||||||| |||||| |||||| ||||||    
T  21814295 cagtgtaattatatgtgtcggtgtcgtgtcggtgtcggacacg 21814337  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 64 - 132
Target Start/End: Original strand, 36838578 - 36838645
Alignment:
Q  64 agtgtaattatatgtgtcggtttcgtg-ttggtgtcagacacgtgtctaatccgaggagtgtccgtgctt 132  Q
    ||||||||||||||||||||| ||||| |||||||| |||||  | ||||||| ||||||||| ||||||    
T  36838578 agtgtaattatatgtgtcggtgtcgtgtttggtgtccgacac--gcctaatccaaggagtgtctgtgctt 36838645  T

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Target: scaffold0446 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0446
Description:

Target: scaffold0446; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 206 - 298
Target Start/End: Original strand, 3221 - 3313
Alignment:
Q  206 ccaaaattagaaaccctaatatccaaaatcac-aacttatcagtaaatcaatcaatatataaagatgtgtattatgattcactaacctttcaag 298  Q
    ||||||||||||| ||||||||||||| || | |||| | |||||||| |||||| |||||||||||  |||  ||||||||| ||||| ||||    
T  3221 ccaaaattagaaatcctaatatccaaattctcaaactcagcagtaaat-aatcaagatataaagatggatatggtgattcactgaccttgcaag 3313  T

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Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 62 - 103
Target Start/End: Complemental strand, 8039861 - 8039820
Alignment:
Q  62 tcagtgtaattatatgtgtcggtttcgtgttggtgtcagaca 103  Q
    ||||||||||||||||||||||| |||||| |||||| ||||    
T  8039861 tcagtgtaattatatgtgtcggtgtcgtgtcggtgtcggaca 8039820  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 64 - 105
Target Start/End: Original strand, 11665979 - 11666020
Alignment:
Q  64 agtgtaattatatgtgtcggtttcgtgttggtgtcagacacg 105  Q
    ||||||||||||||||||||| |||||||| ||| |||||||    
T  11665979 agtgtaattatatgtgtcggtgtcgtgttgatgttagacacg 11666020  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 62 - 103
Target Start/End: Complemental strand, 17005645 - 17005604
Alignment:
Q  62 tcagtgtaattatatgtgtcggtttcgtgttggtgtcagaca 103  Q
    |||||||||||||| |||||||| | ||||||||||||||||    
T  17005645 tcagtgtaattataagtgtcggtgttgtgttggtgtcagaca 17005604  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 68 - 104
Target Start/End: Original strand, 28678342 - 28678378
Alignment:
Q  68 taattatatgtgtcggtttcgtgttggtgtcagacac 104  Q
    ||||| ||||||||||| |||||||||||||||||||    
T  28678342 taattgtatgtgtcggtgtcgtgttggtgtcagacac 28678378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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