View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8980_low_56 (Length: 262)
Name: NF8980_low_56
Description: NF8980
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8980_low_56 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 246; Significance: 1e-136; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 17 - 262
Target Start/End: Complemental strand, 50460669 - 50460424
Alignment:
| Q |
17 |
tcagttgcggtggtgcaagaatataagactcgttatataaaaatagtgactatcaagtagaatgaaataagggaaataattttattactaataaaatctt |
116 |
Q |
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| T |
50460669 |
tcagttgcggtggtgcaagaatataagactcgttatataaaaatagtgactatcaagtagaatgaaataagggaaataattttattactaataaaatctt |
50460570 |
T |
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| Q |
117 |
accaatgatgtcaactatggttcttccattggtgaatctccctgttggtcttccaaaatcgataccattaggcaaaaaattagcctttgagagagaaata |
216 |
Q |
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| T |
50460569 |
accaatgatgtcaactatggttcttccattggtgaatctccctgttggtcttccaaaatcgataccattaggcaaaaaattagcctttgagagagaaata |
50460470 |
T |
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| Q |
217 |
atgtaattattgtttcctacatcaactagagaatctccaaatacaa |
262 |
Q |
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| T |
50460469 |
atgtaattattgtttcctacatcaactagagaatctccaaatacaa |
50460424 |
T |
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