View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8980_low_6 (Length: 611)
Name: NF8980_low_6
Description: NF8980
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8980_low_6 |
 | |
|
| [»] scaffold0244 (1 HSPs) |
| | |
|
Alignment Details
Target: chr6 (Bit Score: 326; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 212 - 596
Target Start/End: Original strand, 2332157 - 2332539
Alignment:
| Q |
212 |
accctttttattatacacccaggtcatcatcagacgacgccgaaataaaatttatggtttgaatttggaaaacgtatggtgcaccaatgcaagcactctc |
311 |
Q |
| |
|
|||||||||||||||||| |||| |||||||||| |||| ||||||||||||| |||||||||| |||||||| ||||||||| ||||||||||||||| |
|
|
| T |
2332157 |
accctttttattatacacgcaggccatcatcagaagacggcgaaataaaatttctggtttgaatgtggaaaac--atggtgcacgaatgcaagcactctc |
2332254 |
T |
|
| Q |
312 |
aaaagggaagcctcaaagttttttatgaatctattccaatcaaatgatccctgtaaacctctcatatagtttacaactggataatattccatctcttagc |
411 |
Q |
| |
|
||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
2332255 |
aaaagggaagcctcaaagttttttatgcatctatcccaatcaaatgatccctgtaaacctctcatatagtttacaactggataatattccatctcttggc |
2332354 |
T |
|
| Q |
412 |
attaacttgatggaccagcttctcttgcctgtaactatggaaaggattaaagattctattttccctatgcactcttacaaagccctaggacatgatggat |
511 |
Q |
| |
|
|||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2332355 |
attagcttgatggaccagcttctcttgcctgtcactatggaaaggattaaagattctattttccctatgcactcttacaaagccctaggacatgatggat |
2332454 |
T |
|
| Q |
512 |
ttcaaccgatattttacaaaatttgttggcatattgttgggcatgatgtatgggaaatggtgtctgcctgtttggtgctttttct |
596 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2332455 |
ttcaaccgatattttacaaaatttgttggcatattgttgggcatgatgtatgggaaatggtgtctgcctgtttggtgctttttct |
2332539 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 14 - 139
Target Start/End: Original strand, 2331968 - 2332085
Alignment:
| Q |
14 |
caaacaacctaaagagaaggtaaaactagtaatacaatatataaaaaatttcaaattcagtgatagaaacgattgtggggagtcaaggatcaaaacgttt |
113 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||| ||||||| |||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
2331968 |
caaacaacctaaagagaaggtaaaactagtaatacaatatatataaaa----aaattcaa--atagaaacgattgtggggagacaaggatcaaaacgttt |
2332061 |
T |
|
| Q |
114 |
tatatatgtgcaaaagccataagcaa |
139 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
2332062 |
--tatatgtgcaaaagccataagcaa |
2332085 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 47; Significance: 2e-17; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 460 - 574
Target Start/End: Complemental strand, 1261909 - 1261795
Alignment:
| Q |
460 |
aaagattctattttccctatgcactcttacaaagccctaggacatgatggatttcaaccgatattttacaaaatttgttggcatattgttgggcatgatg |
559 |
Q |
| |
|
|||||| |||||||| | ||||||||||||||||||| || | ||||| |||||||| || |||| ||||| || |||||||||||||||| |||||| |
|
|
| T |
1261909 |
aaagatgctattttctcaatgcactcttacaaagccccgggtccagatggttttcaacctatttttttcaaaacttattggcatattgttggggatgatg |
1261810 |
T |
|
| Q |
560 |
tatgggaaatggtgt |
574 |
Q |
| |
|
| ||| ||||||||| |
|
|
| T |
1261809 |
tgtggaaaatggtgt |
1261795 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0244 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0244
Description:
Target: scaffold0244; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 460 - 574
Target Start/End: Complemental strand, 16604 - 16490
Alignment:
| Q |
460 |
aaagattctattttccctatgcactcttacaaagccctaggacatgatggatttcaaccgatattttacaaaatttgttggcatattgttgggcatgatg |
559 |
Q |
| |
|
|||||| |||||||| | ||||||| ||||||||||| || | ||||| |||||||| || |||| |||| || |||||||| ||||||| |||||| |
|
|
| T |
16604 |
aaagatgctattttctcaatgcacttttacaaagccccgggtccagatggttttcaacctatttttttcaaagcttattggcatagtgttggggatgatg |
16505 |
T |
|
| Q |
560 |
tatgggaaatggtgt |
574 |
Q |
| |
|
| ||| ||||||||| |
|
|
| T |
16504 |
tctggaaaatggtgt |
16490 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University