View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8980_low_61 (Length: 240)
Name: NF8980_low_61
Description: NF8980
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8980_low_61 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 208; Significance: 1e-114; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 17 - 240
Target Start/End: Complemental strand, 32657061 - 32656838
Alignment:
| Q |
17 |
acccaaaatttgaaacggttgttattcggagaagcatcattaacagttcctttcaagtaaacactaagaacaccactagctgaaacccaatcatgctgat |
116 |
Q |
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| T |
32657061 |
acccaaaatttgaaacggttgttattcggagaagcatcattaacagttcctttcaagtaaacactgagaacaccactagctgaaacccaatcatgctgat |
32656962 |
T |
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| Q |
117 |
taacgagtctccgaagcaaatactgcaatctccggcgatgctctgttctgagagggttaggacagagacgaagaacataagaaggtcttgtaagcgataa |
216 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
32656961 |
taacgagtctccgcagcaaatactgcaatctccggcgatgctctgttctgagaggtttaggacatagacgaagaacataagaaggtcttgtaagcgataa |
32656862 |
T |
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| Q |
217 |
acggattctcatctccttcttttt |
240 |
Q |
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|||||||||||||||||||||||| |
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| T |
32656861 |
acggattctcatctccttcttttt |
32656838 |
T |
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