View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8980_low_63 (Length: 233)
Name: NF8980_low_63
Description: NF8980
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8980_low_63 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 188; Significance: 1e-102; HSPs: 9)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 21 - 216
Target Start/End: Original strand, 24614204 - 24614399
Alignment:
| Q |
21 |
gtttactgattatgatgatgatctctataagttctatcatcttgaagagtctcagattagggccaactcaaaagggtttaagatagattttcaaatgaga |
120 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
24614204 |
gtttacggattatgatgatgatctctataagttctatcatcttgaagagtctcagattagggccaactcaaaagggtttaaggtagattttcaaatgaga |
24614303 |
T |
|
| Q |
121 |
atgaatgttgtagattggttaatacaaacacactatgaacaaaaactcatgccagaaaccctatatctttgtgtcaacatactcgatcgcgttctt |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24614304 |
atgaatgttgtagattggttaatacaaacacactatgaacaaaaactcatgccagaaaccctatatctttgtgtcaacatactcgatcgcgttctt |
24614399 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 176; E-Value: 6e-95
Query Start/End: Original strand, 21 - 216
Target Start/End: Complemental strand, 24117170 - 24116975
Alignment:
| Q |
21 |
gtttactgattatgatgatgatctctataagttctatcatcttgaagagtctcagattagggccaactcaaaagggtttaagatagattttcaaatgaga |
120 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
24117170 |
gtttactgattatgatgatgatctctataagttctatcatcttgaagagtctcagattagggccaactcaaaagggtttaaggtagattttcaaatgaga |
24117071 |
T |
|
| Q |
121 |
atgaatgttgtagattggttaatacaaacacactatgaacaaaaactcatgccagaaaccctatatctttgtgtcaacatactcgatcgcgttctt |
216 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||| |||||| |
|
|
| T |
24117070 |
aagaatgttgtagattggttaatacaaacacactatgaacaaaaactcatgccagaaaccctctatctttgtgtcaacgtactcgatcgtgttctt |
24116975 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 28 - 209
Target Start/End: Complemental strand, 24109456 - 24109275
Alignment:
| Q |
28 |
gattatgatgatgatctctataagttctatcatcttgaagagtctcagattagggccaactcaaaagggtttaagatagattttcaaatgagaatgaatg |
127 |
Q |
| |
|
||||| |||||||||||||| ||||| |||||| ||||||||||||| |||||||| |||||||||||||||||| ||||||||| |||||||| | || |
|
|
| T |
24109456 |
gattacgatgatgatctctacaagttttatcatattgaagagtctcaaattagggcaaactcaaaagggtttaaggtagattttctaatgagaaaaattg |
24109357 |
T |
|
| Q |
128 |
ttgtagattggttaatacaaacacactatgaacaaaaactcatgccagaaaccctatatctttgtgtcaacatactcgatcg |
209 |
Q |
| |
|
| ||||||||||| ||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||| ||||| |
|
|
| T |
24109356 |
tcgtagattggttgatacaaacacactataaacaaaaactcatgccagaaaccctctatctttgtgtcaacatacttgatcg |
24109275 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 21 - 200
Target Start/End: Original strand, 23689305 - 23689484
Alignment:
| Q |
21 |
gtttactgattatgatgatgatctctataagttctatcatcttgaagagtctcagattagggccaactcaaaagggtttaagatagattttcaaatgaga |
120 |
Q |
| |
|
||||| |||||||||||||||||| || || || ||||| |||||||||||||| || || |||||||| ||||| ||| |||||| |||||| ||| |
|
|
| T |
23689305 |
gtttagtgattatgatgatgatctatacaaattttatcaccttgaagagtctcaaatccagggaaactcaaacgggttcaaggtagattctcaaattaga |
23689404 |
T |
|
| Q |
121 |
atgaatgttgtagattggttaatacaaacacactatgaacaaaaactcatgccagaaaccctatatctttgtgtcaacat |
200 |
Q |
| |
|
| |||||| ||||||||||| |||||||||||||| |||||||| || ||||| ||||| | ||||| ||||||||||| |
|
|
| T |
23689405 |
aagaatgtcgtagattggttgatacaaacacactacgaacaaaagctgatgccggaaacgttttatctctgtgtcaacat |
23689484 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 21 - 200
Target Start/End: Original strand, 24061542 - 24061721
Alignment:
| Q |
21 |
gtttactgattatgatgatgatctctataagttctatcatcttgaagagtctcagattagggccaactcaaaagggtttaagatagattttcaaatgaga |
120 |
Q |
| |
|
||||| |||||||||||||||||| || || || ||||| |||||||||||||| || || |||||||| ||||| ||| |||||| |||||| ||| |
|
|
| T |
24061542 |
gtttagtgattatgatgatgatctatacaaattttatcaccttgaagagtctcaaatccagggaaactcaaacgggttcaaggtagattctcaaattaga |
24061641 |
T |
|
| Q |
121 |
atgaatgttgtagattggttaatacaaacacactatgaacaaaaactcatgccagaaaccctatatctttgtgtcaacat |
200 |
Q |
| |
|
| |||||| ||||||||||| |||||||||||||| |||||||| || ||||| ||||| | ||||| ||||||||||| |
|
|
| T |
24061642 |
aagaatgtcgtagattggttgatacaaacacactacgaacaaaagctgatgccggaaacgttttatctctgtgtcaacat |
24061721 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 27 - 200
Target Start/End: Original strand, 23692769 - 23692942
Alignment:
| Q |
27 |
tgattatgatgatgatctctataagttctatcatcttgaagagtctcagattagggccaactcaaaagggtttaagatagattttcaaatgagaatgaat |
126 |
Q |
| |
|
|||||||||||||||||| || | | |||||||||||||||||||| || | | |||||||| ||| | ||| |||||| |||| |||||| |||| |
|
|
| T |
23692769 |
tgattatgatgatgatctataccaatattatcatcttgaagagtctcaaatcaacggaaactcaaacgggctcaaggtagattctcaactgagaaagaat |
23692868 |
T |
|
| Q |
127 |
gttgtagattggttaatacaaacacactatgaacaaaaactcatgccagaaaccctatatctttgtgtcaacat |
200 |
Q |
| |
|
|| ||||||||||| |||||||||||||| |||||||| | ||||| ||||| || ||||| ||||||||||| |
|
|
| T |
23692869 |
gtggtagattggttgatacaaacacactaccaacaaaaattgatgccggaaacgctttatctctgtgtcaacat |
23692942 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 27 - 200
Target Start/End: Original strand, 23711209 - 23711382
Alignment:
| Q |
27 |
tgattatgatgatgatctctataagttctatcatcttgaagagtctcagattagggccaactcaaaagggtttaagatagattttcaaatgagaatgaat |
126 |
Q |
| |
|
|||||||||||||||||| || | | |||||||||||||||||||| || | | |||||||| ||| | ||| |||||| |||| |||||| |||| |
|
|
| T |
23711209 |
tgattatgatgatgatctataccaatattatcatcttgaagagtctcaaatcaacggaaactcaaacgggctcaaggtagattctcaactgagaaagaat |
23711308 |
T |
|
| Q |
127 |
gttgtagattggttaatacaaacacactatgaacaaaaactcatgccagaaaccctatatctttgtgtcaacat |
200 |
Q |
| |
|
|| ||||||||||| |||||||||||||| |||||||| | ||||| ||||| || ||||| ||||||||||| |
|
|
| T |
23711309 |
gtggtagattggttgatacaaacacactaccaacaaaaattgatgccggaaacgctttatctctgtgtcaacat |
23711382 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 27 - 200
Target Start/End: Original strand, 23729665 - 23729838
Alignment:
| Q |
27 |
tgattatgatgatgatctctataagttctatcatcttgaagagtctcagattagggccaactcaaaagggtttaagatagattttcaaatgagaatgaat |
126 |
Q |
| |
|
|||||||||||||||||| || | | |||||||||||||||||||| || | | |||||||| ||| | ||| |||||| |||| |||||| |||| |
|
|
| T |
23729665 |
tgattatgatgatgatctataccaatattatcatcttgaagagtctcaaatcaacggaaactcaaacgggctcaaggtagattctcaactgagaaagaat |
23729764 |
T |
|
| Q |
127 |
gttgtagattggttaatacaaacacactatgaacaaaaactcatgccagaaaccctatatctttgtgtcaacat |
200 |
Q |
| |
|
|| ||||||||||| |||||||||||||| |||||||| | ||||| ||||| || ||||| ||||||||||| |
|
|
| T |
23729765 |
gtggtagattggttgatacaaacacactaccaacaaaaattgatgccggaaacgctttatctctgtgtcaacat |
23729838 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 27 - 200
Target Start/End: Original strand, 23748120 - 23748293
Alignment:
| Q |
27 |
tgattatgatgatgatctctataagttctatcatcttgaagagtctcagattagggccaactcaaaagggtttaagatagattttcaaatgagaatgaat |
126 |
Q |
| |
|
|||||||||||||||||| || | | |||||||||||||||||||| || | | |||||||| ||| | ||| |||||| |||| |||||| |||| |
|
|
| T |
23748120 |
tgattatgatgatgatctataccaatattatcatcttgaagagtctcaaatcaacggaaactcaaacgggctcaaggtagattctcaactgagaaagaat |
23748219 |
T |
|
| Q |
127 |
gttgtagattggttaatacaaacacactatgaacaaaaactcatgccagaaaccctatatctttgtgtcaacat |
200 |
Q |
| |
|
|| ||||||||||| |||||||||||||| |||||||| | ||||| ||||| || ||||| ||||||||||| |
|
|
| T |
23748220 |
gtggtagattggttgatacaaacacactaccaacaaaaattgatgccggaaacgctttatctctgtgtcaacat |
23748293 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University