View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8980_low_66 (Length: 219)
Name: NF8980_low_66
Description: NF8980
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8980_low_66 |
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Alignment Details
Target: chr4 (Bit Score: 183; Significance: 4e-99; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 14 - 204
Target Start/End: Complemental strand, 21835073 - 21834883
Alignment:
| Q |
14 |
tcagcaagcaaagtaaatcaaactcaagctaataattccaacaacaacaaacaaatgaaacagtaatagcaaatcgaaccagaattgctagtgaagacag |
113 |
Q |
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| T |
21835073 |
tcagcaagcaaagtaaatcaaactcaagctaataattccaacaacaacaaacaaatgaaacagtaataacaaatcgaaccagaattgctagtgaagacag |
21834974 |
T |
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| Q |
114 |
ataagattcataaactacaaaagatggtgtctagcaatcgttcactgagagggtttgaagggcatggtcttgcacagctgaatgatgttta |
204 |
Q |
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| T |
21834973 |
atgagattcataaactacaaaagatggtgtctagcaatcgttcactgagagggtttgaagggcatggtcttgcacagctgaatgatgttta |
21834883 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 46 - 139
Target Start/End: Complemental strand, 6595228 - 6595135
Alignment:
| Q |
46 |
taattccaacaacaacaaacaaatgaaacagtaatagcaaatcgaaccagaattgctagtgaagacagataagattcataaactacaaaagatg |
139 |
Q |
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|||||||||||||||||||||||| ||| | |||| ||||| |||||||||||||||||||| | | || ||||||||| |||||||||||| |
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| T |
6595228 |
taattccaacaacaacaaacaaataaaaaaataatgacaaattgaaccagaattgctagtgaaaagacatgagattcatactctacaaaagatg |
6595135 |
T |
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