View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8980_low_7 (Length: 601)
Name: NF8980_low_7
Description: NF8980
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8980_low_7 |
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Alignment Details
Target: chr1 (Bit Score: 259; Significance: 1e-144; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 321 - 587
Target Start/End: Original strand, 31853006 - 31853272
Alignment:
| Q |
321 |
ttggttgttttttaatacatacccttgacgttgaagaaaataacctcagaatcaaagtggtgtggtgaaacaaaagcatgtcctttagcttctaaaatgg |
420 |
Q |
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| T |
31853006 |
ttggttgttttttaatacatacccttgacgttgaagaaaataacctcagaatcaaagtggtgtggtgaaacaaaagcatgtcctttagcttctaaaatgg |
31853105 |
T |
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| Q |
421 |
tcaaaccataattctcaaagtttctgagcagctttgatttttgatcaaacatgtttagagccataactctaccatcatctgtttctattttggtttcaaa |
520 |
Q |
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| T |
31853106 |
tcaaaccataattctcaaagtttctaagcagctttgatttttgatcaaacatgtttagagccataactctaccatcatctgtatctattttggtttcaaa |
31853205 |
T |
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| Q |
521 |
atctctgtcttcaaaaacataaggattttcatcctcttcatgttcatgttcacgttcatgttgatgt |
587 |
Q |
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| T |
31853206 |
atctctgtcttcaaaaacataaggattttcatcctcttcatgttcatgttcacgttcatgttgatgt |
31853272 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 17 - 256
Target Start/End: Original strand, 31852702 - 31852941
Alignment:
| Q |
17 |
aataatagatcaaataatgttgttagaagttgtaacctcaagatttactggagcagaggcagaggaaggtggcatgtgcaatgctgccacaaaaagcttc |
116 |
Q |
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| T |
31852702 |
aataatagatcaaataatgttgttagaagttgtaacctcaagatttactggagcagaggcagaggaaggtggcatgtgcaatgctgcaacaaaaagcttc |
31852801 |
T |
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| Q |
117 |
tcattctcatctctattaaccaagtacataggtgttcctgcaggtaccctcataatgtcaccagcttcaaggttaaatctctcggttttatcttccatca |
216 |
Q |
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| T |
31852802 |
tcattctcatctctattaaccaagtacataggtgttcctgcaggtaccctcataatgtcaccagcttcaaggttaaatctctcggttttatcttccatca |
31852901 |
T |
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| Q |
217 |
ccaacccaattattcctctccctatagtaattcaacaagg |
256 |
Q |
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| T |
31852902 |
ccaacccaattattcctctccctatagtaattcaacaagg |
31852941 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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