View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8980_low_8 (Length: 566)
Name: NF8980_low_8
Description: NF8980
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8980_low_8 |
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Alignment Details
Target: chr1 (Bit Score: 345; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 12 - 396
Target Start/End: Complemental strand, 3306534 - 3306151
Alignment:
| Q |
12 |
gtttggtggtgtctgatattggtaggtggtaagggattattggcgatttttagatggtcgagaagacttttttgtttgggaggaaggtttggtgtctgaa |
111 |
Q |
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| T |
3306534 |
gtttggtggtgtctgatattggtaggtggtaaggggttattggcgatttttagatggtcgagaagacttttttgttcgggaggaaggtttggtgtctgaa |
3306435 |
T |
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| Q |
112 |
ctccgtttgagctttggagaccttgaaccactttcatttgagtgtgacaattgatgttgggtgagttcacatgacaatatgttttctgtttcctcggttt |
211 |
Q |
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| T |
3306434 |
ctccgtttgagctttggagaccttgaaccactttcatttgagtgtgacaattgatgttgggtgagttcacatgacaatatgttttctgtttcctcggttt |
3306335 |
T |
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| Q |
212 |
atatttccttatccctcatctttttgtctcctttaggtttttctaaggaaggagttagcgcattaggttccaatggaagagtgcattgcttcatctaagg |
311 |
Q |
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| T |
3306334 |
atatttccttatccctcatctttttgtctcctttaggtttttctaaggaaggagttagcgcattaggttccaatggaagagtgcattgcttcgtctaatt |
3306235 |
T |
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| Q |
312 |
taattgtcatctcttggcaattgttgagggaaagattacctactcgattcaacttatttaggcaaattgtgtcgtatataattga |
396 |
Q |
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| T |
3306234 |
taattgtcatctcttggcaattgttgagggaaagattacctacttgactcaactca-ttaggcaaattgtgtcgtatataattga |
3306151 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 139; E-Value: 2e-72
Query Start/End: Original strand, 394 - 547
Target Start/End: Complemental strand, 3306118 - 3305964
Alignment:
| Q |
394 |
tgagttatcctagtgtcagttaatttttt-atgtttgtatctttagtaaatcatgaaaatgggaggtcaatgttgtttattgttaagaattttggcttgg |
492 |
Q |
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||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
3306118 |
tgagttatcctagtgtcggttaatttttttatgtttgtatctttagtaaatcatgaaaatgggaggtcaatgttgtttattgttaagaactttggcttgg |
3306019 |
T |
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| Q |
493 |
attccttgcaagatgtcttattttgatttttaaggactgaagtatcccttctatt |
547 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3306018 |
attccttgcaagatgtcttattttgatttttaaggactgaagtatcccttctatt |
3305964 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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