View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8981_high_100 (Length: 284)

Name: NF8981_high_100
Description: NF8981
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8981_high_100
NF8981_high_100
[»] chr5 (5 HSPs)
chr5 (151-263)||(38472325-38472437)
chr5 (6-141)||(22860590-22860724)
chr5 (58-110)||(28297695-28297747)
chr5 (151-184)||(26912098-26912131)
chr5 (58-88)||(38472190-38472220)
[»] chr2 (6 HSPs)
chr2 (6-123)||(45107798-45107915)
chr2 (6-123)||(45109517-45109634)
chr2 (58-141)||(37349767-37349849)
chr2 (34-141)||(13968907-13969013)
chr2 (58-141)||(4108924-4109006)
chr2 (151-184)||(42249546-42249579)
[»] chr1 (1 HSPs)
chr1 (8-115)||(7351779-7351886)
[»] chr4 (5 HSPs)
chr4 (6-123)||(25243382-25243498)
chr4 (58-141)||(31954768-31954850)
chr4 (58-141)||(40137846-40137928)
chr4 (33-141)||(24826593-24826701)
chr4 (159-200)||(17319378-17319419)
[»] chr3 (4 HSPs)
chr3 (43-126)||(20127623-20127706)
chr3 (34-141)||(17441730-17441837)
chr3 (58-141)||(14486389-14486471)
chr3 (58-141)||(17472000-17472082)
[»] scaffold0003 (1 HSPs)
scaffold0003 (176-268)||(47430-47520)
[»] chr6 (4 HSPs)
chr6 (176-268)||(27439842-27439932)
chr6 (58-112)||(16990237-16990291)
chr6 (151-188)||(16268862-16268899)
chr6 (158-200)||(9927940-9927982)
[»] chr7 (2 HSPs)
chr7 (58-141)||(17835085-17835166)
chr7 (58-141)||(25248899-25248981)
[»] scaffold0178 (1 HSPs)
scaffold0178 (151-184)||(1530-1563)


Alignment Details
Target: chr5 (Bit Score: 105; Significance: 2e-52; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 151 - 263
Target Start/End: Original strand, 38472325 - 38472437
Alignment:
Q  151 atctttattcatcttcatcttaaacaaaaatccaaaaagatccatttccactatatcaactaaacatctctctctatggacatctttctctcgatcataa 250  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  38472325 atctttattcatcttcatcttaaacaaaaacccaaaaagatccatttccactatatcaactaaccatctctctctatggacatctttctctcgatcataa 38472424  T
Q  251 ccagccccatctc 263  Q
    |||||||||||||    
T  38472425 ccagccccatctc 38472437  T

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Target: chr5; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 6 - 141
Target Start/End: Original strand, 22860590 - 22860724
Alignment:
Q  6 agggggacacttagatgattgaggggggagattccatatagtgaaaacaacctattattcatttacttcttaagagtgctcttgagactccacctaggaa 105  Q
    ||||||||||||||||| |||| |||  |||||| | | |||||||||||  |||| |||||||||||| |||||||||| |||||||||||| |||||     
T  22860590 agggggacacttagatgtttgatgggacagattcaaaacagtgaaaacaatgtattgttcatttacttcgtaagagtgcttttgagactccacgtaggac 22860689  T
Q  106 gtttcactgaacagctcatcttattgtaattaactt 141  Q
    |||||||| | ||||||| | | |||||||||||||    
T  22860690 gtttcactaagcagctca-cctgttgtaattaactt 22860724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 58 - 110
Target Start/End: Complemental strand, 28297747 - 28297695
Alignment:
Q  58 tattattcatttacttcttaagagtgctcttgagactccacctaggaagtttc 110  Q
    ||||||||||||||||||||||||||||||| |||||||||||| || |||||    
T  28297747 tattattcatttacttcttaagagtgctcttaagactccacctaagacgtttc 28297695  T

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Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 151 - 184
Target Start/End: Complemental strand, 26912131 - 26912098
Alignment:
Q  151 atctttattcatcttcatcttaaacaaaaatcca 184  Q
    ||||||||||||||||||||||||||||||||||    
T  26912131 atctttattcatcttcatcttaaacaaaaatcca 26912098  T

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Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 58 - 88
Target Start/End: Original strand, 38472190 - 38472220
Alignment:
Q  58 tattattcatttacttcttaagagtgctctt 88  Q
    |||||||||||||||||||||||||||||||    
T  38472190 tattattcatttacttcttaagagtgctctt 38472220  T

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Target: chr2 (Bit Score: 74; Significance: 5e-34; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 6 - 123
Target Start/End: Complemental strand, 45107915 - 45107798
Alignment:
Q  6 agggggacacttagatgattgaggggggagattccatatagtgaaaacaacctattattcatttacttcttaagagtgctcttgagactccacctaggaa 105  Q
    ||||||||||||||||| ||||| |  ||||||||| || ||||||||||  ||||||||||||||||||||| |||||||||||||||||||||||||     
T  45107915 agggggacacttagatgtttgagagaagagattccagatggtgaaaacaatgtattattcatttacttcttaatagtgctcttgagactccacctaggat 45107816  T
Q  106 gtttcactgaacagctca 123  Q
    |||||||||| |||||||    
T  45107815 gtttcactgagcagctca 45107798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 6 - 123
Target Start/End: Complemental strand, 45109634 - 45109517
Alignment:
Q  6 agggggacacttagatgattgaggggggagattccatatagtgaaaacaacctattattcatttacttcttaagagtgctcttgagactccacctaggaa 105  Q
    |||||||| |||||||| ||||| |  ||||||||| || ||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||     
T  45109634 agggggactcttagatgtttgagagaagagattccaaatggtgaaaacaatgtattattcatttacttcttaagagtgctcttgagactccacctaggat 45109535  T
Q  106 gtttcactgaacagctca 123  Q
    |||||||||| |||||||    
T  45109534 gtttcactgagcagctca 45109517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 58 - 141
Target Start/End: Original strand, 37349767 - 37349849
Alignment:
Q  58 tattattcatttacttcttaagagtgctcttgagactccacctaggaagtttcactgaacagctcatcttattgtaattaactt 141  Q
    |||||||||||||||||| |||||||||||||||||||||||||||| |||||||||| ||||||| | | |||||||||||||    
T  37349767 tattattcatttacttctgaagagtgctcttgagactccacctaggacgtttcactgagcagctca-cctgttgtaattaactt 37349849  T

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Target: chr2; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 34 - 141
Target Start/End: Original strand, 13968907 - 13969013
Alignment:
Q  34 agattccatatagtgaaaacaacctattattcatttacttcttaagagtgctcttgagactccacctaggaagtttcactgaacagctcatcttattgta 133  Q
    |||||||| |||||||||| |   ||||||||| ||| ||||||||||||||||||||||||| |||| || |||||| ||| ||||||| ||| |||||    
T  13968907 agattccagatagtgaaaatagtgtattattcagttatttcttaagagtgctcttgagactcctcctaagacgtttcattgagcagctca-cttgttgta 13969005  T
Q  134 attaactt 141  Q
    ||||||||    
T  13969006 attaactt 13969013  T

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Target: chr2; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 58 - 141
Target Start/End: Complemental strand, 4109006 - 4108924
Alignment:
Q  58 tattattcatttacttcttaagagtgctcttgagactccacctaggaagtttcactgaacagctcatcttattgtaattaactt 141  Q
    ||||||||| ||||||||  ||||||||||||||||||||||| ||| |||||||||| ||||||| | | |||||||||||||    
T  4109006 tattattcagttacttctgtagagtgctcttgagactccaccttggacgtttcactgagcagctca-cctgttgtaattaactt 4108924  T

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Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 151 - 184
Target Start/End: Complemental strand, 42249579 - 42249546
Alignment:
Q  151 atctttattcatcttcatcttaaacaaaaatcca 184  Q
    |||||||||||||||||||||||| |||||||||    
T  42249579 atctttattcatcttcatcttaaataaaaatcca 42249546  T

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Target: chr1 (Bit Score: 68; Significance: 2e-30; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 8 - 115
Target Start/End: Complemental strand, 7351886 - 7351779
Alignment:
Q  8 ggggacacttagatgattgaggggggagattccatatagtgaaaacaacctattattcatttacttcttaagagtgctcttgagactccacctaggaagt 107  Q
    ||||||||||||||| ||||| | |||||||||| || ||||||||||  |||||||||||||||| ||||||||||||||||||||||||||| || ||    
T  7351886 ggggacacttagatgtttgagagaggagattccagatggtgaaaacaatgtattattcatttactttttaagagtgctcttgagactccacctaagatgt 7351787  T
Q  108 ttcactga 115  Q
    ||||||||    
T  7351786 ttcactga 7351779  T

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Target: chr4 (Bit Score: 62; Significance: 8e-27; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 6 - 123
Target Start/End: Original strand, 25243382 - 25243498
Alignment:
Q  6 agggggacacttagatgattgaggggggagattccatatagtgaaaacaacctattattcatttacttcttaagagtgctcttgagactccacctaggaa 105  Q
    ||||||||||||| ||| ||||||||  | |||||| ||||| ||||||   ||||||||||||||||||| |||||||||||||||||||||||||||     
T  25243382 agggggacactta-atgtttgaggggacaaattccagatagtaaaaacagtgtattattcatttacttcttgagagtgctcttgagactccacctaggat 25243480  T
Q  106 gtttcactgaacagctca 123  Q
    |||||||||| |||||||    
T  25243481 gtttcactgagcagctca 25243498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 58 - 141
Target Start/End: Original strand, 31954768 - 31954850
Alignment:
Q  58 tattattcatttacttcttaagagtgctcttgagactccacctaggaagtttcactgaacagctcatcttattgtaattaactt 141  Q
    ||||||||||||||| ||  ||||||||||||||||||||||||||| |||||||||| ||||||| | | |||||||||||||    
T  31954768 tattattcatttactcctgtagagtgctcttgagactccacctaggacgtttcactgagcagctca-cctgttgtaattaactt 31954850  T

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Target: chr4; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 58 - 141
Target Start/End: Original strand, 40137846 - 40137928
Alignment:
Q  58 tattattcatttacttcttaagagtgctcttgagactccacctaggaagtttcactgaacagctcatcttattgtaattaactt 141  Q
    |||||||||||||||||| |||||| ||||||||||||||||||||| |||||||| | ||||||| | | |||||||||||||    
T  40137846 tattattcatttacttctgaagagttctcttgagactccacctaggatgtttcactaagcagctca-cctgttgtaattaactt 40137928  T

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Target: chr4; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 33 - 141
Target Start/End: Original strand, 24826593 - 24826701
Alignment:
Q  33 gagattccatatagtgaaaa-caacctattattcatttacttcttaagagtgctcttgagactccacctaggaagtttcactgaacagctcatcttattg 131  Q
    ||||||||| |||||||||| ||   ||||||||||||||||||  |||||| |||||||||||||||||||| |||||| ||| ||||||| | | |||    
T  24826593 gagattccagatagtgaaaaacattgtattattcatttacttctgtagagtgatcttgagactccacctaggatgtttcattgagcagctca-cctgttg 24826691  T
Q  132 taattaactt 141  Q
    ||||||||||    
T  24826692 taattaactt 24826701  T

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Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 159 - 200
Target Start/End: Original strand, 17319378 - 17319419
Alignment:
Q  159 tcatcttcatcttaaacaaaaatccaaaaagatccatttcca 200  Q
    |||||||||||||||||||||| ||| ||| |||||||||||    
T  17319378 tcatcttcatcttaaacaaaaacccagaaatatccatttcca 17319419  T

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Target: chr3 (Bit Score: 60; Significance: 1e-25; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 43 - 126
Target Start/End: Complemental strand, 20127706 - 20127623
Alignment:
Q  43 atagtgaaaacaacctattattcatttacttcttaagagtgctcttgagactccacctaggaagtttcactgaacagctcatct 126  Q
    |||||||||||||  ||||||||||||| |||||||||||||||||||||||||||||| || |||||||||| ||||||||||    
T  20127706 atagtgaaaacaatgtattattcatttatttcttaagagtgctcttgagactccacctatgatgtttcactgagcagctcatct 20127623  T

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Target: chr3; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 34 - 141
Target Start/End: Original strand, 17441730 - 17441837
Alignment:
Q  34 agattccatatagtgaaaa-caacctattattcatttacttcttaagagtgctcttgagactccacctaggaagtttcactgaacagctcatcttattgt 132  Q
    |||||||| |||||||||| ||   |||||||||||||||||| ||||||||||| |||||||||||||||| |||||||||| ||||||| | | ||||    
T  17441730 agattccagatagtgaaaaacattgtattattcatttacttctgaagagtgctctcgagactccacctaggacgtttcactgagcagctca-cctgttgt 17441828  T
Q  133 aattaactt 141  Q
    |||||||||    
T  17441829 aattaactt 17441837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 58 - 141
Target Start/End: Complemental strand, 14486471 - 14486389
Alignment:
Q  58 tattattcatttacttcttaagagtgctcttgagactccacctaggaagtttcactgaacagctcatcttattgtaattaactt 141  Q
    |||||||||||||||||| |||||||||||||||||||||||||  |  ||||||||||||||||||| | |||||||||||||    
T  14486471 tattattcatttacttctgaagagtgctcttgagactccacctaaaacatttcactgaacagctcatc-tgttgtaattaactt 14486389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 58 - 141
Target Start/End: Original strand, 17472000 - 17472082
Alignment:
Q  58 tattattcatttacttcttaagagtgctcttgagactccacctaggaagtttcactgaacagctcatcttattgtaattaactt 141  Q
    |||||||||||||||||| ||||||||||| |||||||||| ||||| |||||||||| ||||||| | | |||||||||||||    
T  17472000 tattattcatttacttctgaagagtgctctcgagactccacgtaggatgtttcactgagcagctca-cctgttgtaattaactt 17472082  T

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Target: scaffold0003 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 176 - 268
Target Start/End: Original strand, 47430 - 47520
Alignment:
Q  176 aaaaatccaaaaagatccatttccactatatcaactaaacatctctctctatggacatctttctctcgatcataaccagccccatctctccct 268  Q
    ||||| ||| ||||||||||||||||| |||||||||| ||||||  ||||||||| ||||||||||||||||||||| ||||||||||||||    
T  47430 aaaaaaccagaaagatccatttccactctatcaactaaccatctc--tctatggacctctttctctcgatcataaccacccccatctctccct 47520  T

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Target: chr6 (Bit Score: 58; Significance: 2e-24; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 176 - 268
Target Start/End: Complemental strand, 27439932 - 27439842
Alignment:
Q  176 aaaaatccaaaaagatccatttccactatatcaactaaacatctctctctatggacatctttctctcgatcataaccagccccatctctccct 268  Q
    ||||| ||| ||||||||||||||||| |||||||||| |||||||||  |||||| ||||||||||||||||||||| ||||||||||||||    
T  27439932 aaaaaaccagaaagatccatttccactctatcaactaaccatctctct--atggacctctttctctcgatcataaccacccccatctctccct 27439842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 58 - 112
Target Start/End: Complemental strand, 16990291 - 16990237
Alignment:
Q  58 tattattcatttacttcttaagagtgctcttgagactccacctaggaagtttcac 112  Q
    |||||||||||||||||||||||||||||||||||||||||||| || |||||||    
T  16990291 tattattcatttacttcttaagagtgctcttgagactccacctaagatgtttcac 16990237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 151 - 188
Target Start/End: Original strand, 16268862 - 16268899
Alignment:
Q  151 atctttattcatcttcatcttaaacaaaaatccaaaaa 188  Q
    |||||| |||||||||||||||||||||||||||||||    
T  16268862 atcttttttcatcttcatcttaaacaaaaatccaaaaa 16268899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 158 - 200
Target Start/End: Original strand, 9927940 - 9927982
Alignment:
Q  158 ttcatcttcatcttaaacaaaaatccaaaaagatccatttcca 200  Q
    |||||||||||||||| |||||| ||| |||||||||||||||    
T  9927940 ttcatcttcatcttaagcaaaaacccagaaagatccatttcca 9927982  T

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Target: chr7 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 58 - 141
Target Start/End: Original strand, 17835085 - 17835166
Alignment:
Q  58 tattattcatttacttcttaagagtgctcttgagactccacctaggaagtttcactgaacagctcatcttattgtaattaactt 141  Q
    ||||||||| ||||||  ||| ||||||||||||||||||||||||| |||| ||||| ||||||| | | |||||||||||||    
T  17835085 tattattcagttactttgtaa-agtgctcttgagactccacctaggacgttttactgagcagctca-cctgttgtaattaactt 17835166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 58 - 141
Target Start/End: Complemental strand, 25248981 - 25248899
Alignment:
Q  58 tattattcatttacttcttaagagtgctcttgagactccacctaggaagtttcactgaacagctcatcttattgtaattaactt 141  Q
    ||||||||  ||||||||  ||||||||||||||||||||||| ||| |||| ||||| ||||||| | | |||||||||||||    
T  25248981 tattattctgttacttctgtagagtgctcttgagactccaccttggacgttttactgagcagctca-cctgttgtaattaactt 25248899  T

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Target: scaffold0178 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0178
Description:

Target: scaffold0178; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 151 - 184
Target Start/End: Original strand, 1530 - 1563
Alignment:
Q  151 atctttattcatcttcatcttaaacaaaaatcca 184  Q
    ||||||||||||||||||||||||||||||||||    
T  1530 atctttattcatcttcatcttaaacaaaaatcca 1563  T

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