View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8981_high_104 (Length: 269)

Name: NF8981_high_104
Description: NF8981
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8981_high_104
NF8981_high_104
[»] chr7 (5 HSPs)
chr7 (24-259)||(3105335-3105570)
chr7 (55-259)||(9907038-9907243)
chr7 (45-96)||(31115384-31115435)
chr7 (48-91)||(2473097-2473140)
chr7 (48-83)||(15613779-15613814)
[»] chr1 (9 HSPs)
chr1 (56-251)||(43702643-43702841)
chr1 (128-259)||(40812922-40813052)
chr1 (56-99)||(27740657-27740700)
chr1 (116-259)||(15728142-15728286)
chr1 (131-258)||(27740508-27740636)
chr1 (140-238)||(14099627-14099726)
chr1 (131-258)||(52575472-52575602)
chr1 (131-200)||(12268212-12268280)
chr1 (54-99)||(52575623-52575667)
[»] chr4 (3 HSPs)
chr4 (48-259)||(229859-230071)
chr4 (45-81)||(43407098-43407134)
chr4 (131-198)||(23125859-23125926)
[»] chr5 (5 HSPs)
chr5 (48-253)||(14126007-14126213)
chr5 (45-160)||(23419269-23419384)
chr5 (48-103)||(33531147-33531201)
chr5 (48-102)||(4873420-4873474)
chr5 (131-199)||(4873492-4873559)
[»] chr8 (4 HSPs)
chr8 (121-219)||(41005129-41005226)
chr8 (48-98)||(18699098-18699148)
chr8 (48-97)||(41005239-41005288)
chr8 (46-99)||(44103551-44103604)
[»] chr2 (3 HSPs)
chr2 (48-103)||(16870146-16870200)
chr2 (48-98)||(15736140-15736190)
chr2 (121-259)||(43994285-43994424)
[»] chr3 (1 HSPs)
chr3 (131-199)||(1765745-1765812)
[»] scaffold0050 (1 HSPs)
scaffold0050 (45-79)||(34272-34306)


Alignment Details
Target: chr7 (Bit Score: 179; Significance: 1e-96; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 24 - 259
Target Start/End: Complemental strand, 3105570 - 3105335
Alignment:
Q  24 ggttatgcacgcactcatcacctattttataattttcaatgatattacttaataagcatctaatctcttcaacccaacacatcacnnnnnnnttactaaa 123  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||       ||| ||||    
T  3105570 ggttatgcacgcactcatcacctattttataattttcaatgatattacttaataaacatccaatctcttcaacccaacacatcacaaaaaaattattaaa 3105471  T
Q  124 tatgtcttattaataactcaatatcattgtatttcaaagaaggtttaccaatttgtgtataatttattacatatggctcacggaaattaaatagagcgag 223  Q
    |||| ||||||||||||||||| |||||||||||||||||| ||||||| |||||||||||||||||||||||||||||| ||||||||||||||||| |    
T  3105470 tatgccttattaataactcaatgtcattgtatttcaaagaaagtttaccgatttgtgtataatttattacatatggctcaaggaaattaaatagagcggg 3105371  T
Q  224 tgcttacatagtcactcttctcaataaacaccaaac 259  Q
    ||||||||||||||||||||||||||||||||||||    
T  3105370 tgcttacatagtcactcttctcaataaacaccaaac 3105335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 55 - 259
Target Start/End: Original strand, 9907038 - 9907243
Alignment:
Q  55 attttcaatgatattacttaataagcatctaatctcttcaacccaacacatcacnnnnnnnttactaaatatgtcttattaataactcaatatcattgta 154  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||| |||        ||| ||||||  || ||||||||||||||| ||||||||    
T  9907038 attttcaatgatattacttaataagcatcaaatctcttcaacccaacacctcagaaaaaagttattaaatagatcctattaataactcaatgtcattgta 9907137  T
Q  155 tttcaaagaaggtttaccaatttgtgtataatttattacatatggctcacggaaattaaatagagcga--gtgcttacatagtcactcttctcaataaac 252  Q
    | ||||| || |||||    |||||||| ||||||||||||||| | |||  |||||||| |||| ||  ||||||| ||| |||| |||||| |||| |    
T  9907138 tctcaaa-aaagtttattggtttgtgtacaatttattacatatgacccacaaaaattaaagagagagagggtgcttatataatcacccttctctataagc 9907236  T
Q  253 accaaac 259  Q
    |||||||    
T  9907237 accaaac 9907243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 45 - 96
Target Start/End: Complemental strand, 31115435 - 31115384
Alignment:
Q  45 ctattttataattttcaatgatattacttaataagcatctaatctcttcaac 96  Q
    |||||||||||||||||||||||||||||||||| |||| ||| ||| ||||    
T  31115435 ctattttataattttcaatgatattacttaataaacatccaatttctccaac 31115384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 48 - 91
Target Start/End: Complemental strand, 2473140 - 2473097
Alignment:
Q  48 ttttataattttcaatgatattacttaataagcatctaatctct 91  Q
    |||| ||||||||||||||||||||||| ||||||| |||||||    
T  2473140 ttttttaattttcaatgatattacttaacaagcatccaatctct 2473097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 48 - 83
Target Start/End: Original strand, 15613779 - 15613814
Alignment:
Q  48 ttttataattttcaatgatattacttaataagcatc 83  Q
    |||| |||||||||||||||||||||||||||||||    
T  15613779 ttttttaattttcaatgatattacttaataagcatc 15613814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 58; Significance: 2e-24; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 56 - 251
Target Start/End: Original strand, 43702643 - 43702841
Alignment:
Q  56 ttttcaatgatattacttaataagcatctaatctcttcaacccaacacatcacnnnnnnnttactaaatatgtcttattaataactcaatatcattgtat 155  Q
    ||||||||||||||||||||||| |||  ||||||| ||||||| ||| ||||       ||| ||||||| || ||||||||||| ||| |||||||||    
T  43702643 ttttcaatgatattacttaataaacattcaatctctccaacccagcacctcacaaaaaagttaataaatatatcatattaataacttaatgtcattgtat 43702742  T
Q  156 ttcaaagaaggtttaccaatttgtgtataatttattacatatggctcacggaaattaaatagagcga----gtgcttacatagtcactcttctcaataaa 251  Q
    |||||  ||| ||||   ||||||||| ||||||||||||||||| |||| |||||||| |||| ||    ||||||| |||||||| |||||| |||||    
T  43702743 ttcaacaaag-tttattgatttgtgtacaatttattacatatggcccacgaaaattaaagagagagagagggtgcttatatagtcacccttctctataaa 43702841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 128 - 259
Target Start/End: Original strand, 40812922 - 40813052
Alignment:
Q  128 tcttattaataactcaatatcattgtatttcaaagaaggtttaccaatttgtgtataatttattacatatggctcacggaaattaaatagagcgagtgct 227  Q
    |||||||||||||||||| ||||||||||||||| || |||||    |||||||| ||||||||||||||| | |||| |||||||| | || |  ||||    
T  40812922 tcttattaataactcaatgtcattgtatttcaaa-aaagtttattggtttgtgtacaatttattacatatgtcccacgaaaattaaagatagaggatgct 40813020  T
Q  228 tacatagtcactcttctcaataaacaccaaac 259  Q
    || |||| ||| |||||| |||| ||||||||    
T  40813021 tatatagccacccttctctataagcaccaaac 40813052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 56 - 99
Target Start/End: Complemental strand, 27740700 - 27740657
Alignment:
Q  56 ttttcaatgatattacttaataagcatctaatctcttcaaccca 99  Q
    ||||||| |||||||||||||||||||||||||||| |||||||    
T  27740700 ttttcaacgatattacttaataagcatctaatctctccaaccca 27740657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 116 - 259
Target Start/End: Complemental strand, 15728286 - 15728142
Alignment:
Q  116 ttactaaatatgtcttattaataactcaatatcattgtatttcaaagaaggtttaccaatttgtgtataatttattacatatggctcacggaaattaaat 215  Q
    |||||||||| ||| ||||||||||||||| |||||||||||| || || ||||    ||||||||| |||||||||| ||||||  | | ||||||||     
T  15728286 ttactaaataggtcctattaataactcaatgtcattgtatttc-aacaaagtttttttatttgtgtacaatttattacgtatggcctaagaaaattaaag 15728188  T
Q  216 ag--agcgagtgcttacatagtcactcttctcaataaacaccaaac 259  Q
    ||  || | |||||||||||| |||  ||||| |||| ||||||||    
T  15728187 agaaagagggtgcttacatagccaccattctctataagcaccaaac 15728142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 131 - 258
Target Start/End: Complemental strand, 27740636 - 27740508
Alignment:
Q  131 tattaataactcaatatcattgtatttcaaagaaggtttaccaatttgtgtataatttattacatatggctcacggaaattaaatagagcga--gtgctt 228  Q
    ||||||||||||||| |||||||||||| || || |||||   ||||||||| ||||||||||||||| | ||   |||||||| |||| ||  ||||||    
T  27740636 tattaataactcaatgtcattgtatttc-aacaaagtttattgatttgtgtacaatttattacatatgacccaaaaaaattaaagagagagagggtgctt 27740538  T
Q  229 acatagtcactcttctcaataaacaccaaa 258  Q
    | |||| ||| |||||| |||| |||||||    
T  27740537 atatagccacccttctctataagcaccaaa 27740508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 140 - 238
Target Start/End: Original strand, 14099627 - 14099726
Alignment:
Q  140 ctcaatatcattgtatttcaaagaaggtttaccaatttgtgtataatttattacatatggctcacggaaattaaatagagcga--gtgcttacatagtca 237  Q
    |||||| ||||||||||||||| ||| ||||    |||||||| ||||||||||||||||| |||| |||||||| |||| ||  ||||||| |||||||    
T  14099627 ctcaatgtcattgtatttcaaaaaag-tttattggtttgtgtacaatttattacatatggcccacgaaaattaaagagagagagggtgcttatatagtca 14099725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 131 - 258
Target Start/End: Complemental strand, 52575602 - 52575472
Alignment:
Q  131 tattaataactcaatatcattgtatttcaaagaaggtttaccaatttgtgtataatttattacatatggctcacggaaattaaatagagcga----gtgc 226  Q
    ||||||||||||| | |||||||||||| || || |||||  ||||| |||| ||||||||||||||| |  ||| |||||||| |||| ||    ||||    
T  52575602 tattaataactcattgtcattgtatttc-aacaaagtttattaatttttgtacaatttattacatatgacctacgaaaattaaagagagagagagggtgc 52575504  T
Q  227 ttacatagtcactcttctcaataaacaccaaa 258  Q
    ||| |||| ||| |||||| |||| |||||||    
T  52575503 ttatatagccacccttctctataagcaccaaa 52575472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 131 - 200
Target Start/End: Original strand, 12268212 - 12268280
Alignment:
Q  131 tattaataactcaatatcattgtatttcaaagaaggtttaccaatttgtgtataatttattacatatggc 200  Q
    ||||||||||||||| ||||||||||||||| || |||||    |||||||| |||||||||| ||||||    
T  12268212 tattaataactcaatgtcattgtatttcaaa-aaagtttattggtttgtgtacaatttattacgtatggc 12268280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 54 - 99
Target Start/End: Complemental strand, 52575667 - 52575623
Alignment:
Q  54 aattttcaatgatattacttaataagcatctaatctcttcaaccca 99  Q
    ||||||||||| |||||||||||||||| ||||||||| |||||||    
T  52575667 aattttcaatgctattacttaataagca-ctaatctctccaaccca 52575623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 50; Significance: 1e-19; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 48 - 259
Target Start/End: Complemental strand, 230071 - 229859
Alignment:
Q  48 ttttataattttcaatgatattacttaataagcatctaatctcttcaacccaacacatcacnnnnnnnttactaaatatgtcttattaataactcaatat 147  Q
    |||| |||||||||||||||||||||||||| || ||||| ||| ||||||| ||| |||        ||| ||||||  || ||||||||||||||| |    
T  230071 ttttttaattttcaatgatattacttaataaacacctaatatctccaacccagcacctcaaaataaagttaataaatagatcctattaataactcaatgt 229972  T
Q  148 cattgtatttcaaagaaggtttaccaatttgtgtataatttattacatatggctcacggaaattaaatagagcga--gtgcttacatagtcactcttctc 245  Q
    ||||||||||| || || |||||   ||||||||| | ||||||||||||||| |||  |||||||| |||| ||  ||||||| |||  ||| ||||||    
T  229971 cattgtatttc-aacaaagtttattgatttgtgtacattttattacatatggcccactaaaattaaagagagagagggtgcttatataaccacccttctc 229873  T
Q  246 aataaacaccaaac 259  Q
     |||| ||||||||    
T  229872 tataagcaccaaac 229859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 45 - 81
Target Start/End: Original strand, 43407098 - 43407134
Alignment:
Q  45 ctattttataattttcaatgatattacttaataagca 81  Q
    ||||||||| |||||||||||||||||||||||||||    
T  43407098 ctattttatgattttcaatgatattacttaataagca 43407134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 131 - 198
Target Start/End: Original strand, 23125859 - 23125926
Alignment:
Q  131 tattaataactcaatatcattgtatttcaaagaaggtttaccaa-tttgtgtataatttattacatatg 198  Q
    ||||||||||||||| |||||||||||| || || |||||  || |||||||| |||||||||||||||    
T  23125859 tattaataactcaatgtcattgtatttc-aacaaagtttattaattttgtgtacaatttattacatatg 23125926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 44; Significance: 4e-16; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 48 - 253
Target Start/End: Original strand, 14126007 - 14126213
Alignment:
Q  48 ttttataattttcaatgatattacttaataagcatctaatctcttcaacccaacacatcacnnnnnnnttactaaatatgtcttattaataactcaatat 147  Q
    ||||| ||||||||||||||||||||||||||||   ||||||| ||||| | ||| |||        ||| ||||||  || ||||||||||||||| |    
T  14126007 ttttaaaattttcaatgatattacttaataagcagtcaatctctccaacctagcacctcagaaaaatgttaataaatagatcctattaataactcaatgt 14126106  T
Q  148 cattgtatttcaaagaaggtttaccaatttgtgtataatttattacatatggctcacggaaattaaatagagcga--gtgcttacatagtcactcttctc 245  Q
    ||||||||||| || || |||||   ||||||||| ||||||||||||||| | |||  |||||||| |||| ||  | ||||| |||| ||| ||||||    
T  14126107 cattgtatttc-aacaaagtttaatgatttgtgtacaatttattacatatgacccacaaaaattaaagagagagagggagcttatatagccacccttctc 14126205  T
Q  246 aataaaca 253  Q
     |||||||    
T  14126206 tataaaca 14126213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 45 - 160
Target Start/End: Complemental strand, 23419384 - 23419269
Alignment:
Q  45 ctattttataattttcaatgatattacttaataagcatctaatctcttcaacccaacacatcacnnnnnnnttactaaatatgtcttattaataactcaa 144  Q
    ||||||||||| ||| ||||||||||||||||||||| |||| ||||  |||  ||||| |||        |||||||||| ||| ||||||||||  ||    
T  23419384 ctattttataaatttaaatgatattacttaataagcacctaaactctataactaaacacttcagaaaatagttactaaataggtcctattaataacgtaa 23419285  T
Q  145 tatcattgtatttcaa 160  Q
    ||||||||||||||||    
T  23419284 tatcattgtatttcaa 23419269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 48 - 103
Target Start/End: Complemental strand, 33531201 - 33531147
Alignment:
Q  48 ttttataattttcaatgatattacttaataagcatctaatctcttcaacccaacac 103  Q
    |||| ||||||||||||||||||||||||||||| | ||||||| |||||||||||    
T  33531201 ttttttaattttcaatgatattacttaataagca-ccaatctctccaacccaacac 33531147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 48 - 102
Target Start/End: Original strand, 4873420 - 4873474
Alignment:
Q  48 ttttataattttcaatgatattacttaataagcatctaatctcttcaacccaaca 102  Q
    |||| |||||||||||||||||||||| ||| || ||||||||| ||||||||||    
T  4873420 ttttttaattttcaatgatattacttactaatcacctaatctctccaacccaaca 4873474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 131 - 199
Target Start/End: Original strand, 4873492 - 4873559
Alignment:
Q  131 tattaataactcaatatcattgtatttcaaagaaggtttaccaatttgtgtataatttattacatatgg 199  Q
    ||||||||||||||| | ||||||||||||  ||| ||||  |||||||||| ||||||||||||||||    
T  4873492 tattaataactcaatgttattgtatttcaacaaag-tttattaatttgtgtacaatttattacatatgg 4873559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 121 - 219
Target Start/End: Complemental strand, 41005226 - 41005129
Alignment:
Q  121 aaatatgtcttattaataactcaatatcattgtatttcaaagaaggtttaccaatttgtgtataatttattacatatggctcacggaaattaaatagag 219  Q
    |||||| || ||||||||| ||||| ||||||||||||||  ||  ||||  |||||||||||||||||||||||||||| || | |||||||| ||||    
T  41005226 aaatatatcctattaataattcaatgtcattgtatttcaacaaaa-tttattaatttgtgtataatttattacatatggcccatgaaaattaaaaagag 41005129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 48 - 98
Target Start/End: Complemental strand, 18699148 - 18699098
Alignment:
Q  48 ttttataattttcaatgatattacttaataagcatctaatctcttcaaccc 98  Q
    |||| |||||||||||||||||||||||||| |||| ||||||| ||||||    
T  18699148 ttttttaattttcaatgatattacttaataaacatccaatctctccaaccc 18699098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 48 - 97
Target Start/End: Complemental strand, 41005288 - 41005239
Alignment:
Q  48 ttttataattttcaatgatattacttaataagcatctaatctcttcaacc 97  Q
    |||| ||||||||||||||||| ||||||||||||| ||||||| |||||    
T  41005288 ttttttaattttcaatgatatttcttaataagcatccaatctctccaacc 41005239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 46 - 99
Target Start/End: Original strand, 44103551 - 44103604
Alignment:
Q  46 tattttataattttcaatgatattacttaataagcatctaatctcttcaaccca 99  Q
    |||||||||||||  ||||||||||| ||||||| || ||||||||| ||||||    
T  44103551 tattttataatttctaatgatattacctaataagtatataatctcttaaaccca 44103604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 36; Significance: 0.00000000002; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 48 - 103
Target Start/End: Original strand, 16870146 - 16870200
Alignment:
Q  48 ttttataattttcaatgatattacttaataagcatctaatctcttcaacccaacac 103  Q
    |||| ||||||||||||||||||||||||||||| | ||||||| |||||||||||    
T  16870146 ttttttaattttcaatgatattacttaataagca-ccaatctctccaacccaacac 16870200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 48 - 98
Target Start/End: Complemental strand, 15736190 - 15736140
Alignment:
Q  48 ttttataattttcaatgatattacttaataagcatctaatctcttcaaccc 98  Q
    |||| |||||||||||||||||||||||||| |||| ||||||| ||||||    
T  15736190 ttttttaattttcaatgatattacttaataaacatccaatctctccaaccc 15736140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 121 - 259
Target Start/End: Complemental strand, 43994424 - 43994285
Alignment:
Q  121 aaatatgtcttattaataactcaatatcattgtatttcaaagaaggtttaccaatttgtgtataatttattacatatggctcacggaaattaaatagagc 220  Q
    |||||| || ||||||||||||||| |||||||||||| || || |||||   |||| |||| || |||||||||||||  |||  |||||||| ||||     
T  43994424 aaatatatcctattaataactcaatgtcattgtatttc-aacaaagtttattgatttatgtacaaattattacatatggtccacaaaaattaaagagaga 43994326  T
Q  221 ga--gtgcttacatagtcactcttctcaataaacaccaaac 259  Q
    ||  ||||||| |||| ||| |||||| ||||  |||||||    
T  43994325 gagggtgcttatatagccacccttctctataagtaccaaac 43994285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 131 - 199
Target Start/End: Complemental strand, 1765812 - 1765745
Alignment:
Q  131 tattaataactcaatatcattgtatttcaaagaaggtttaccaatttgtgtataatttattacatatgg 199  Q
    ||||| ||||||||| ||||||||||||||| ||| ||||    |||||||||||||||||||||||||    
T  1765812 tattattaactcaatgtcattgtatttcaaaaaag-tttattggtttgtgtataatttattacatatgg 1765745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0050 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0050
Description:

Target: scaffold0050; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 45 - 79
Target Start/End: Original strand, 34272 - 34306
Alignment:
Q  45 ctattttataattttcaatgatattacttaataag 79  Q
    |||||||||||||||||||||||||| ||||||||    
T  34272 ctattttataattttcaatgatattatttaataag 34306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University