View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8981_high_108 (Length: 259)

Name: NF8981_high_108
Description: NF8981
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8981_high_108
NF8981_high_108
[»] chr7 (1 HSPs)
chr7 (140-255)||(44953265-44953380)
[»] chr2 (2 HSPs)
chr2 (153-259)||(34332273-34332379)
chr2 (206-243)||(562251-562288)
[»] chr4 (1 HSPs)
chr4 (153-204)||(38620694-38620744)
[»] chr6 (2 HSPs)
chr6 (206-243)||(33846215-33846252)
chr6 (206-243)||(33847126-33847163)
[»] chr5 (2 HSPs)
chr5 (206-243)||(11893807-11893844)
chr5 (206-243)||(28086222-28086259)
[»] chr1 (1 HSPs)
chr1 (206-243)||(10040297-10040334)


Alignment Details
Target: chr7 (Bit Score: 108; Significance: 2e-54; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 140 - 255
Target Start/End: Complemental strand, 44953380 - 44953265
Alignment:
Q  140 taggaaaaagatacatgtacaccccaatgtacaccctccatgtggcatggctatttttgtaattttacccttttctatctcttagatctccctttcttct 239  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||    
T  44953380 taggaaaaagatacatgtacaccccaatgtacaccctccatgtggcatgattatttttgtaattttacccttttctatctcttagatctccctttcttct 44953281  T
Q  240 cccttccttctctctc 255  Q
    ||||||||||||||||    
T  44953280 cccttccttctctctc 44953265  T

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Target: chr2 (Bit Score: 107; Significance: 1e-53; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 153 - 259
Target Start/End: Complemental strand, 34332379 - 34332273
Alignment:
Q  153 catgtacaccccaatgtacaccctccatgtggcatggctatttttgtaattttacccttttctatctcttagatctccctttcttctcccttccttctct 252  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34332379 catgtacaccccaatgtacaccctccatgtggcatggctatttttgtaattttacccttttctatctcttagatctccctttcttctcccttccttctct 34332280  T
Q  253 ctcactc 259  Q
    |||||||    
T  34332279 ctcactc 34332273  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 206 - 243
Target Start/End: Original strand, 562251 - 562288
Alignment:
Q  206 acccttttctatctcttagatctccctttcttctccct 243  Q
    ||||| |||| |||||||||||||||||||||||||||    
T  562251 accctcttctctctcttagatctccctttcttctccct 562288  T

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Target: chr4 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 153 - 204
Target Start/End: Original strand, 38620694 - 38620744
Alignment:
Q  153 catgtacaccccaatgtacaccctccatgtggcatggctatttttgtaattt 204  Q
    |||||||||||||||||||||||| ||||||||| ||||||||| |||||||    
T  38620694 catgtacaccccaatgtacaccct-catgtggcaaggctattttggtaattt 38620744  T

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Target: chr6 (Bit Score: 30; Significance: 0.00000009; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 206 - 243
Target Start/End: Original strand, 33846215 - 33846252
Alignment:
Q  206 acccttttctatctcttagatctccctttcttctccct 243  Q
    ||||| |||| |||||||||||||||||||||||||||    
T  33846215 accctcttctctctcttagatctccctttcttctccct 33846252  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 206 - 243
Target Start/End: Complemental strand, 33847163 - 33847126
Alignment:
Q  206 acccttttctatctcttagatctccctttcttctccct 243  Q
    ||||| |||| |||||||||||||||||||||||||||    
T  33847163 accctcttctctctcttagatctccctttcttctccct 33847126  T

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Target: chr5 (Bit Score: 30; Significance: 0.00000009; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 206 - 243
Target Start/End: Original strand, 11893807 - 11893844
Alignment:
Q  206 acccttttctatctcttagatctccctttcttctccct 243  Q
    ||||| |||| |||||||||||||||||||||||||||    
T  11893807 accctcttctctctcttagatctccctttcttctccct 11893844  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 206 - 243
Target Start/End: Complemental strand, 28086259 - 28086222
Alignment:
Q  206 acccttttctatctcttagatctccctttcttctccct 243  Q
    ||||| |||| |||||||||||||||||||||||||||    
T  28086259 accctcttctctctcttagatctccctttcttctccct 28086222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 206 - 243
Target Start/End: Complemental strand, 10040334 - 10040297
Alignment:
Q  206 acccttttctatctcttagatctccctttcttctccct 243  Q
    ||||| |||| |||||||||||||||||||||||||||    
T  10040334 accctcttctctctcttagatctccctttcttctccct 10040297  T

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