View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8981_high_110 (Length: 254)
Name: NF8981_high_110
Description: NF8981
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8981_high_110 |
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Alignment Details
Target: chr2 (Bit Score: 240; Significance: 1e-133; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 1 - 248
Target Start/End: Complemental strand, 44236226 - 44235979
Alignment:
| Q |
1 |
ttgacttttttgaaacaatgggtttcaaatgtcctgaaaggaaaggtgccgctgactttcttcaagaagtaacttccagaaaggatcaagcacagtactg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
44236226 |
ttgacttttttgaaacaatgggtttcaaatgtcctgaaaggaaaggtgccgctgactttcttcaagaagtaacttccaaaaaggatcaagcacagtactg |
44236127 |
T |
|
| Q |
101 |
ggtgcgcagagatcaaccatacagatttgtaactgttactcaattcgctgaggcatttcaatccttccatattggtaggaaacttgctgaggagctttcc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44236126 |
ggtgcgcagagatcaaccatacagatttgtaactgttactcaattcgctgaggcgtttcaatccttccatattggtaggaaacttgctgaggagctttcc |
44236027 |
T |
|
| Q |
201 |
gtaccatttgacaagacgaagagccatccagctgctttgaccaccaaa |
248 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44236026 |
gtaccatttgacaagacgaagagccatccagctgctttgaccaccaaa |
44235979 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 1 - 248
Target Start/End: Complemental strand, 44225412 - 44225165
Alignment:
| Q |
1 |
ttgacttttttgaaacaatgggtttcaaatgtcctgaaaggaaaggtgccgctgactttcttcaagaagtaacttccagaaaggatcaagcacagtactg |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
44225412 |
ttgacttttttgaaacaatgggtttcaaatgtcctgaaaggaaaggtgctgctgactttcttcaagaagtaacttccaaaaaggatcaagcacagtactg |
44225313 |
T |
|
| Q |
101 |
ggtgcgcagagatcaaccatacagatttgtaactgttactcaattcgctgaggcatttcaatccttccatattggtaggaaacttgctgaggagctttcc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44225312 |
ggtgcgcagagatcaaccatacagatttgtaactgttactcaattcgctgaggcgtttcaatccttccatattggtaggaaacttgctgaggagctttcc |
44225213 |
T |
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| Q |
201 |
gtaccatttgacaagacgaagagccatccagctgctttgaccaccaaa |
248 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44225212 |
gtaccatttgacaagacgaagagccatccagctgctttgaccaccaaa |
44225165 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 1 - 248
Target Start/End: Complemental strand, 44213251 - 44213004
Alignment:
| Q |
1 |
ttgacttttttgaaacaatgggtttcaaatgtcctgaaaggaaaggtgccgctgactttcttcaagaagtaacttccagaaaggatcaagcacagtactg |
100 |
Q |
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|||||||||| ||| | ||||||||||||||||||||||||||||||| ||||| ||||||||||||||||| |||| ||||||||||||||||||||| |
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| T |
44213251 |
ttgactttttcgaatctatgggtttcaaatgtcctgaaaggaaaggtgttgctgattttcttcaagaagtaacatccaaaaaggatcaagcacagtactg |
44213152 |
T |
|
| Q |
101 |
ggtgcgcagagatcaaccatacagatttgtaactgttactcaattcgctgaggcatttcaatccttccatattggtaggaaacttgctgaggagctttcc |
200 |
Q |
| |
|
|||||||||||||||||||||| ||| |||||||||||||||||| || |||||||||||||| |||||||||||| ||||||||||||||||||||||| |
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| T |
44213151 |
ggtgcgcagagatcaaccataccgatatgtaactgttactcaatttgccgaggcatttcaatcattccatattggtgggaaacttgctgaggagctttcc |
44213052 |
T |
|
| Q |
201 |
gtaccatttgacaagacgaagagccatccagctgctttgaccaccaaa |
248 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44213051 |
ataccatttgacaagacgaagagccatccagctgctttgaccaccaaa |
44213004 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 46; Significance: 2e-17; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 81 - 182
Target Start/End: Original strand, 2884598 - 2884699
Alignment:
| Q |
81 |
aaggatcaagcacagtactgggtgcgcagagatcaaccatacagatttgtaactgttactcaattcgctgaggcatttcaatccttccatattggtagga |
180 |
Q |
| |
|
|||||||||| ||||| ||||| |||||| |||||||||| |||||||||||||||||||| ||||||||||||||||| | |||| |||| |||| |
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| T |
2884598 |
aaggatcaagagcagtattgggttgacagagaaaaaccatacaggtttgtaactgttactcaatttgctgaggcatttcaatcataccatgttggaagga |
2884697 |
T |
|
| Q |
181 |
aa |
182 |
Q |
| |
|
|| |
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|
| T |
2884698 |
aa |
2884699 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 72
Target Start/End: Original strand, 2884410 - 2884481
Alignment:
| Q |
1 |
ttgacttttttgaaacaatgggtttcaaatgtcctgaaaggaaaggtgccgctgactttcttcaagaagtaa |
72 |
Q |
| |
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|||| ||||||||| || | ||||||||||||||||| ||||||||||| || ||||||||||||||||||| |
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| T |
2884410 |
ttgaattttttgaatcagttggtttcaaatgtcctgagaggaaaggtgcagcggactttcttcaagaagtaa |
2884481 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 72
Target Start/End: Complemental strand, 2900554 - 2900483
Alignment:
| Q |
1 |
ttgacttttttgaaacaatgggtttcaaatgtcctgaaaggaaaggtgccgctgactttcttcaagaagtaa |
72 |
Q |
| |
|
|||||||||||||| || | ||||||||||||||||| |||||||| | |||||||||||||||||||||| |
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| T |
2900554 |
ttgacttttttgaatcagttggtttcaaatgtcctgagaggaaaggggtagctgactttcttcaagaagtaa |
2900483 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 81 - 182
Target Start/End: Complemental strand, 2899962 - 2899861
Alignment:
| Q |
81 |
aaggatcaagcacagtactgggtgcgcagagatcaaccatacagatttgtaactgttactcaattcgctgaggcatttcaatccttccatattggtagga |
180 |
Q |
| |
|
|||||||||| ||||| ||||| |||||| |||||||||| ||| |||||||||||||||| ||||||||||||||||| | |||| |||| |||| |
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| T |
2899962 |
aaggatcaagagcagtattgggttgacagagaaaaaccatacaggtttttaactgttactcaatttgctgaggcatttcaatcataccatgttggaagga |
2899863 |
T |
|
| Q |
181 |
aa |
182 |
Q |
| |
|
|| |
|
|
| T |
2899862 |
aa |
2899861 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 69 - 157
Target Start/End: Original strand, 2874718 - 2874806
Alignment:
| Q |
69 |
gtaacttccagaaaggatcaagcacagtactgggtgcgcagagatcaaccatacagatttgtaactgttactcaattcgctgaggcatt |
157 |
Q |
| |
|
|||||||| ||||||||||||| || || ||| ||| ||||||| ||||||| || |||||||| ||||||||||| || |||||||| |
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| T |
2874718 |
gtaacttcaagaaaggatcaagagcaatattggatgcacagagatgaaccatataggtttgtaacagttactcaatttgcagaggcatt |
2874806 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 72
Target Start/End: Original strand, 2874416 - 2874487
Alignment:
| Q |
1 |
ttgacttttttgaaacaatgggtttcaaatgtcctgaaaggaaaggtgccgctgactttcttcaagaagtaa |
72 |
Q |
| |
|
|||| ||||||||| | || ||||||||||||||||| |||||||| | ||||| || ||||||||||||| |
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| T |
2874416 |
ttgaattttttgaatctattggtttcaaatgtcctgagaggaaaggcgttgctgatttccttcaagaagtaa |
2874487 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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