View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8981_high_113 (Length: 252)
Name: NF8981_high_113
Description: NF8981
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8981_high_113 |
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Alignment Details
Target: chr2 (Bit Score: 195; Significance: 1e-106; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 1 - 235
Target Start/End: Complemental strand, 6480332 - 6480098
Alignment:
| Q |
1 |
tattgaacgaatcttttgagtcgtccattgtatcattgctcggtccaatggaattcattgatatagtaagttgaacaaacaacagctgagggggacacac |
100 |
Q |
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| T |
6480332 |
tattgaacgaattttttgagtcgtccattgtatcattgctcggtccaacggaattcattgatatagtgagttgaacggacagcaactgcgggggacacac |
6480233 |
T |
|
| Q |
101 |
cgctgcggttgatgaagagacacccaacatccaagccgacaaggaatctattgttgttttcgtagggtttgatgcttgagagccatttgtccaccatgaa |
200 |
Q |
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| T |
6480232 |
cactgcggttgatgaagagacactcaacatccaagccgacaaggaatctattgttgttttcgtagggtttgatgcttgagagccatttgtccaccatgaa |
6480133 |
T |
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| Q |
201 |
aggtttatttgtgatcattgtgtgaatgatgtctg |
235 |
Q |
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| T |
6480132 |
aggtttatttgtgatcattgtgtgaatgatgtctg |
6480098 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 139; E-Value: 8e-73
Query Start/End: Original strand, 69 - 235
Target Start/End: Original strand, 6489291 - 6489457
Alignment:
| Q |
69 |
agttgaacaaacaacagctgagggggacacaccgctgcggttgatgaagagacacccaacatccaagccgacaaggaatctattgttgttttcgtagggt |
168 |
Q |
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| T |
6489291 |
agttgaacggacatcagctgggggggacacaccgatgcggttgatgaagagacactcaacatccaagccgacaaggaatctattgttgttttcgtagggt |
6489390 |
T |
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| Q |
169 |
ttgatgcttgagagccatttgtccaccatgaaaggtttatttgtgatcattgtgtgaatgatgtctg |
235 |
Q |
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| T |
6489391 |
ttgatgcttgagagccatttgtccaccatgaaaggtctatttgtgatcattgtgtgaatgatgtctg |
6489457 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 113; Significance: 3e-57; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 107 - 235
Target Start/End: Complemental strand, 51946962 - 51946834
Alignment:
| Q |
107 |
ggttgatgaagagacacccaacatccaagccgacaaggaatctattgttgttttcgtagggtttgatgcttgagagccatttgtccaccatgaaaggttt |
206 |
Q |
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| T |
51946962 |
ggttgatgaagagacactcaacatctaagccgacaaggaagctattgttgttttcgtatggtttgatgcttgagagccatttgtccaccatgaaaggttt |
51946863 |
T |
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| Q |
207 |
atttgtgatcattgtgtgaatgatgtctg |
235 |
Q |
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| T |
51946862 |
atttgtgatcattgtgtgaatgatgtctg |
51946834 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 16900648 - 16900583
Alignment:
| Q |
1 |
tattgaacgaatcttttgagtcgtccattgtatcattgctcggtccaatggaattcattgatatag |
66 |
Q |
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| T |
16900648 |
tattgaacgaatcttttgagtcgtccattgtatcattgctcggtccaacggaattcattgatatag |
16900583 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 18349247 - 18349182
Alignment:
| Q |
1 |
tattgaacgaatcttttgagtcgtccattgtatcattgctcggtccaatggaattcattgatatag |
66 |
Q |
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| T |
18349247 |
tattgaacgaatcttttgagtcgtccattgtatcattgctcggtccaacggaattcattgatatag |
18349182 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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