View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8981_high_115 (Length: 250)
Name: NF8981_high_115
Description: NF8981
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8981_high_115 |
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Alignment Details
Target: chr6 (Bit Score: 232; Significance: 1e-128; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 1 - 243
Target Start/End: Complemental strand, 417432 - 417189
Alignment:
| Q |
1 |
gaagtagcaggtggagtaagtgtgacataaaaaa-ggatcaagtgttgtgttggtatcaagaggaacaattgacctgctgctgcaacaatatggatcaca |
99 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
417432 |
gaagtagcaggtggagtaagtgtgacataaaaaaaggatcaagtgttgtgttggtatcaagaggaacaattgacctgctgctgcaacaatatggatcaca |
417333 |
T |
|
| Q |
100 |
gcagcaagttacaagaattagtgtcatttagttataatggtgttatcccaatttctgttagtgatgtcatggttctgcttactaattgttattgttgcat |
199 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
417332 |
gcagcaagttacaagaattagtgtcatttagttataatggtgttatcccaatttctgttagtgatgtcatggttctgcttactaattattattgttgcat |
417233 |
T |
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| Q |
200 |
tgctgtttcctgtgcagtgcagagactatataatatctgtgctc |
243 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||| |
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| T |
417232 |
tgctgtttcctgtgcagtgcagagactatataatatctgtgctc |
417189 |
T |
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