View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8981_high_116 (Length: 250)

Name: NF8981_high_116
Description: NF8981
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8981_high_116
NF8981_high_116
[»] chr6 (4 HSPs)
chr6 (2-79)||(21998276-21998353)
chr6 (3-79)||(22084028-22084104)
chr6 (77-140)||(22084694-22084757)
chr6 (77-136)||(21998436-21998495)
[»] chr7 (1 HSPs)
chr7 (152-228)||(27321022-27321098)
[»] chr1 (1 HSPs)
chr1 (90-138)||(15303631-15303679)


Alignment Details
Target: chr6 (Bit Score: 78; Significance: 2e-36; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 2 - 79
Target Start/End: Original strand, 21998276 - 21998353
Alignment:
Q  2 ttatttcaccattggtcgtcaaactcagcaaataatcagagttccaaaggtttggtcgtggccatatgggttatgaga 79  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21998276 ttatttcaccattggtcgtcaaactcagcaaataatcagagttccaaaggtttggtcgtggccatatgggttatgaga 21998353  T

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Target: chr6; HSP #2
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 3 - 79
Target Start/End: Original strand, 22084028 - 22084104
Alignment:
Q  3 tatttcaccattggtcgtcaaactcagcaaataatcagagttccaaaggtttggtcgtggccatatgggttatgaga 79  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22084028 tatttcaccattggtcgtcaaactcagcaaataatcagagttccaaaggtttggtcgtggccatatgggttatgaga 22084104  T

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Target: chr6; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 77 - 140
Target Start/End: Original strand, 22084694 - 22084757
Alignment:
Q  77 agaattcctttaatgatatgattaatgtgaatctatgtttatgatacaacttatatgagaacta 140  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  22084694 agaattcctttaatgatatgattaatgtgaatctatgtttatgatacgacttatatgagaacta 22084757  T

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Target: chr6; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 77 - 136
Target Start/End: Original strand, 21998436 - 21998495
Alignment:
Q  77 agaattcctttaatgatatgattaatgtgaatctatgtttatgatacaacttatatgaga 136  Q
    ||||||||||||||||||||||||||||||||||||||||||||||  ||||||| ||||    
T  21998436 agaattcctttaatgatatgattaatgtgaatctatgtttatgatatgacttatacgaga 21998495  T

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Target: chr7 (Bit Score: 77; Significance: 8e-36; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 152 - 228
Target Start/End: Complemental strand, 27321098 - 27321022
Alignment:
Q  152 aataatttttctcaaggataaaattgggccttataatttttctcaaggaccaaaataaatcctcactaaaaaatcaa 228  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27321098 aataatttttctcaaggataaaattgggccttataatttttctcaaggaccaaaataaatcctcactaaaaaatcaa 27321022  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 90 - 138
Target Start/End: Complemental strand, 15303679 - 15303631
Alignment:
Q  90 tgatatgattaatgtgaatctatgtttatgatacaacttatatgagaac 138  Q
    |||||||||||||||| |||||| ||||| |||  ||||||||||||||    
T  15303679 tgatatgattaatgtggatctatttttatcatatgacttatatgagaac 15303631  T

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