View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8981_high_118 (Length: 248)
Name: NF8981_high_118
Description: NF8981
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8981_high_118 |
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Alignment Details
Target: chr5 (Bit Score: 201; Significance: 1e-110; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 16 - 240
Target Start/End: Original strand, 40385810 - 40386034
Alignment:
| Q |
16 |
cactttttaaccaaaacttacgttgaccttatgatattctcaagtatatatatagatgaataaagtaaactacgatctcaagcaaatagacaatcattca |
115 |
Q |
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| T |
40385810 |
cactttttaaccaaaacttacgttgaccttatgatattctcaagtatatatatagatgtataaagtaaactacgatctcaagcaaatagacaatcattca |
40385909 |
T |
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| Q |
116 |
aacttcactcctttttggtttcaacctatttctttctgcttgctgcaaatatgtgtgagttcaatttctttcacttcaactctcttctttatttgtttct |
215 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
40385910 |
aacttcactcctttttggtttcaacctaattctttctgcttgctgcaaatatgtgtgagttcaatttctttcacttaaactctcttctttatttgtttca |
40386009 |
T |
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| Q |
216 |
tatgatgctcaacaaaagtataatc |
240 |
Q |
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||| |||||||||||||||| |||| |
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| T |
40386010 |
tataatgctcaacaaaagtaaaatc |
40386034 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 16 - 227
Target Start/End: Original strand, 40375568 - 40375774
Alignment:
| Q |
16 |
cactttttaaccaaaacttacgttgaccttatgatattctcaagtatatatata--gatgaataaagtaaactacgatctcaagcaaatagacaatcatt |
113 |
Q |
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||||||||||||||||||||||| ||| |||||||||| ||||||||||||||| |||| |||||| |||| ||||| |||||||||||||| |
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| T |
40375568 |
cactttttaaccaaaacttacgtggactttatgatattgtcaagtatatatatatagatggataaagctaact-------caagctaatagacaatcatt |
40375660 |
T |
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| Q |
114 |
caaacttcactcctttttggtttcaacctatttctttctgcttgctgcaaatatgtgtgagttcaatttctttcacttcaactctcttctttatttgttt |
213 |
Q |
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|||| ||||||||||| | ||||||| ||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
40375661 |
caaatttcactcctttctagtttcaagctaattctttctgcttgctgcaaacatgtgtgagttcaatttctttcacttcaactcttttctttatttgttt |
40375760 |
T |
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| Q |
214 |
cttatgatgctcaa |
227 |
Q |
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| ||| |||||||| |
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| T |
40375761 |
catataatgctcaa |
40375774 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 147 - 234
Target Start/End: Original strand, 40332698 - 40332785
Alignment:
| Q |
147 |
ctttctgcttgctgcaaatatgtgtgagttcaatttctttcacttcaactctcttctttatttgtttcttatgatgctcaacaaaagt |
234 |
Q |
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||||||||||||||||| |||||||||||||||||||| ||||||||| ||||||||||||||||||| ||||||||||||||||||| |
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| T |
40332698 |
ctttctgcttgctgcaattatgtgtgagttcaatttctatcacttcaattctcttctttatttgtttcatatgatgctcaacaaaagt |
40332785 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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