View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8981_high_128 (Length: 232)
Name: NF8981_high_128
Description: NF8981
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8981_high_128 |
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Alignment Details
Target: chr1 (Bit Score: 214; Significance: 1e-117; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 1 - 218
Target Start/End: Complemental strand, 48886153 - 48885936
Alignment:
| Q |
1 |
gggattatcaagattgcgaatgatgacggatcgtgcagtgcaatagagaatgttgttggttttgggatcgccggagatgagaatgccgcggccgcgttcg |
100 |
Q |
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| T |
48886153 |
gggattatcaagattgcgaatgatgacggatcgtgcagtgcaatagagaatgttgttggttttgggatcgccggagatgagaatgccgcggccgcgttcg |
48886054 |
T |
|
| Q |
101 |
gtggaaggtgcgcaagcgtaggtttcagagagagttgccattgatggaattgagggtattgtgcgtgtagtgtgaagttgttatgctattgctatggttt |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48886053 |
gtggaaggtgcgcaagcgtaggtttcagagagagttgccattgttggaattgagggtattgtgcgtgtagtgtgaagttgttatgctattgctatggttt |
48885954 |
T |
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| Q |
201 |
ctttcttcatattgtttt |
218 |
Q |
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|||||||||||||||||| |
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| T |
48885953 |
ctttcttcatattgtttt |
48885936 |
T |
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