View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8981_high_132 (Length: 223)
Name: NF8981_high_132
Description: NF8981
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8981_high_132 |
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Alignment Details
Target: chr8 (Bit Score: 118; Significance: 2e-60; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 59 - 205
Target Start/End: Original strand, 28590868 - 28591014
Alignment:
| Q |
59 |
ccttgtgactcctctgtaagctgaagtacgatggccagcgctatgaacaataannnnnnnggaagcatcagaatccatcgcaacaatggatttctgatta |
158 |
Q |
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| T |
28590868 |
ccttgtgactcctctgtaagctgaagtacgatggccagcgctatgaacagtaatttttttggaagcatcagaatccatcgcaacaatggatttctgatta |
28590967 |
T |
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| Q |
159 |
gcatctttagaagattcacctaacttggttacagtagcagaaccaga |
205 |
Q |
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||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28590968 |
gcaactttagaagattcacctaacttggttacagtagcagaaccaga |
28591014 |
T |
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Target: chr6 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 59 - 107
Target Start/End: Complemental strand, 6676352 - 6676304
Alignment:
| Q |
59 |
ccttgtgactcctctgtaagctgaagtacgatggccagcgctatgaaca |
107 |
Q |
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||||||||||||| ||||| ||||||| | |||||||| |||||||||| |
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| T |
6676352 |
ccttgtgactcctatgtaaactgaagtgcaatggccagtgctatgaaca |
6676304 |
T |
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