View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8981_high_133 (Length: 220)
Name: NF8981_high_133
Description: NF8981
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8981_high_133 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 184; Significance: 1e-100; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 184; E-Value: 1e-100
Query Start/End: Original strand, 11 - 202
Target Start/End: Original strand, 16003614 - 16003805
Alignment:
| Q |
11 |
gaggagcacagaaatagcggtatgactcgacttgtggaggaaaatggaaccagggtgaatatttgatcaacaacaaaggtctttaattttgagaattgga |
110 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
16003614 |
gaggaacacagaaatagcggtatgactcgacttgtggaggaaaatggaaccagggtgaatatttgatcaacaacaaaggtctttaattttgagaattgaa |
16003713 |
T |
|
| Q |
111 |
aggaaatcaatataaaatctaaaactacctctattttgtgatggatcttgcaagaacagaaccatgtttatggtggtaagagctatagaaaa |
202 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16003714 |
aggaaatcaatataaaatctaaaactacctctattttgtgatggatcttgcaagaacagaaccatgtttatggtggtaagagctatagaaaa |
16003805 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 164; E-Value: 8e-88
Query Start/End: Original strand, 11 - 202
Target Start/End: Original strand, 26794994 - 26795185
Alignment:
| Q |
11 |
gaggagcacagaaatagcggtatgactcgacttgtggaggaaaatggaaccagggtgaatatttgatcaacaacaaaggtctttaattttgagaattgga |
110 |
Q |
| |
|
||||| |||| ||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26794994 |
gaggaacacataaatagcggtatgactcgacttgtggaggaaaacggaactagggtgaatatttgatcaacaacaaaggtctttaattttgagaattgga |
26795093 |
T |
|
| Q |
111 |
aggaaatcaatataaaatctaaaactacctctattttgtgatggatcttgcaagaacagaaccatgtttatggtggtaagagctatagaaaa |
202 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||| |
|
|
| T |
26795094 |
aggaaatcaatatagaatctaaaactacctctattttgtgatggatcttgcaagaacagaaccatgtttatggtggtaacagctgtagaaaa |
26795185 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 162; Significance: 1e-86; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 21 - 202
Target Start/End: Original strand, 40721968 - 40722149
Alignment:
| Q |
21 |
gaaatagcggtatgactcgacttgtggaggaaaatggaaccagggtgaatatttgatcaacaacaaaggtctttaattttgagaattggaaggaaatcaa |
120 |
Q |
| |
|
||||||||||||||||||||||||| | |||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40721968 |
gaaatagcggtatgactcgacttgtcgtggaaaacgaaaccagggtgaatatttgatcaacaacaaaggtctttaattttgagaattggaaggaaatcaa |
40722067 |
T |
|
| Q |
121 |
tataaaatctaaaactacctctattttgtgatggatcttgcaagaacagaaccatgtttatggtggtaagagctatagaaaa |
202 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
40722068 |
tataaaatctaaaactacctctattttgtgatggatcttgcaagaacataaccatgtttatggtggtaagagctatagaaaa |
40722149 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 115; Significance: 1e-58; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 115; E-Value: 1e-58
Query Start/End: Original strand, 72 - 194
Target Start/End: Complemental strand, 27222063 - 27221941
Alignment:
| Q |
72 |
tttgatcaacaacaaaggtctttaattttgagaattggaaggaaatcaatataaaatctaaaactacctctattttgtgatggatcttgcaagaacagaa |
171 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27222063 |
tttgatcaacaacaaaggtctttaattttgagaattggaaggaaatcaatatagaatctaaaactacctctattttgtgatggatcttgcaagaacagaa |
27221964 |
T |
|
| Q |
172 |
ccatgtttatggtggtaagagct |
194 |
Q |
| |
|
|||| |||||||||||||||||| |
|
|
| T |
27221963 |
ccatatttatggtggtaagagct |
27221941 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 18 - 71
Target Start/End: Complemental strand, 27222875 - 27222822
Alignment:
| Q |
18 |
acagaaatagcggtatgactcgacttgtggaggaaaatggaaccagggtgaata |
71 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
27222875 |
acagaaatagcagtatgactcgacttgtggaggaaaacggaaccagggtgaata |
27222822 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University