View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8981_high_17 (Length: 608)

Name: NF8981_high_17
Description: NF8981
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8981_high_17
NF8981_high_17
[»] chr8 (19 HSPs)
chr8 (219-601)||(1835105-1835497)
chr8 (219-546)||(1878956-1879283)
chr8 (18-151)||(1834904-1835037)
chr8 (18-151)||(1878755-1878888)
chr8 (352-539)||(35735844-35736030)
chr8 (353-473)||(3038470-3038590)
chr8 (351-542)||(4108776-4108961)
chr8 (351-401)||(6267367-6267417)
chr8 (496-544)||(1150251-1150299)
chr8 (100-147)||(24218467-24218514)
chr8 (351-393)||(23176648-23176690)
chr8 (496-541)||(15009241-15009286)
chr8 (496-541)||(41362517-41362562)
chr8 (494-541)||(33906223-33906270)
chr8 (496-542)||(24823418-24823464)
chr8 (496-542)||(43643741-43643787)
chr8 (496-541)||(10555348-10555393)
chr8 (487-539)||(6446700-6446752)
chr8 (496-544)||(27082984-27083032)
[»] chr1 (22 HSPs)
chr1 (225-538)||(21263775-21264094)
chr1 (341-542)||(421387-421589)
chr1 (351-543)||(13876781-13876969)
chr1 (351-473)||(10758162-10758284)
chr1 (351-546)||(16132470-16132661)
chr1 (351-473)||(27118394-27118516)
chr1 (351-487)||(15964150-15964286)
chr1 (341-471)||(28012132-28012263)
chr1 (496-542)||(37619031-37619077)
chr1 (496-544)||(30254417-30254465)
chr1 (485-541)||(47279159-47279215)
chr1 (303-341)||(421604-421642)
chr1 (498-542)||(15382928-15382972)
chr1 (487-542)||(4150481-4150536)
chr1 (496-539)||(15752027-15752070)
chr1 (496-543)||(18422645-18422692)
chr1 (496-547)||(52382612-52382663)
chr1 (496-542)||(1547282-1547328)
chr1 (496-542)||(10182143-10182189)
chr1 (496-542)||(49410560-49410606)
chr1 (496-541)||(27227612-27227657)
chr1 (496-544)||(30254851-30254899)
[»] chr7 (24 HSPs)
chr7 (219-538)||(47190058-47190389)
chr7 (18-151)||(47190442-47190575)
chr7 (341-434)||(8758393-8758486)
chr7 (351-472)||(22955174-22955295)
chr7 (351-471)||(7742985-7743105)
chr7 (341-401)||(19786420-19786480)
chr7 (351-472)||(4618617-4618738)
chr7 (351-473)||(37854158-37854278)
chr7 (351-401)||(5781652-5781702)
chr7 (353-541)||(8133423-8133609)
chr7 (496-542)||(18797303-18797349)
chr7 (496-540)||(24211717-24211761)
chr7 (496-543)||(241024-241071)
chr7 (496-542)||(17842727-17842773)
chr7 (496-546)||(31579210-31579260)
chr7 (496-542)||(40381939-40381985)
chr7 (351-401)||(49002360-49002410)
chr7 (351-392)||(4902465-4902506)
chr7 (496-541)||(7334769-7334814)
chr7 (312-341)||(8758501-8758530)
chr7 (496-541)||(12165727-12165772)
chr7 (496-541)||(27283719-27283764)
chr7 (496-541)||(37109847-37109892)
chr7 (499-547)||(26524471-26524519)
[»] chr4 (30 HSPs)
chr4 (351-541)||(37793380-37793570)
chr4 (341-542)||(5812562-5812763)
chr4 (347-538)||(5915653-5915844)
chr4 (18-151)||(37793702-37793835)
chr4 (18-147)||(5813002-5813130)
chr4 (341-471)||(22729777-22729906)
chr4 (219-322)||(5812825-5812930)
chr4 (341-471)||(22756784-22756913)
chr4 (219-298)||(37793568-37793649)
chr4 (354-542)||(54995664-54995848)
chr4 (351-471)||(1012362-1012483)
chr4 (351-515)||(9743614-9743774)
chr4 (351-401)||(2708009-2708059)
chr4 (496-542)||(32912746-32912792)
chr4 (496-542)||(34361657-34361703)
chr4 (496-541)||(39397918-39397963)
chr4 (351-395)||(17612476-17612520)
chr4 (494-542)||(32579443-32579491)
chr4 (341-401)||(33036054-33036114)
chr4 (496-543)||(25184111-25184158)
chr4 (494-541)||(28003150-28003197)
chr4 (496-543)||(37663905-37663952)
chr4 (496-539)||(47253751-47253794)
chr4 (351-401)||(2266718-2266768)
chr4 (496-542)||(17272010-17272056)
chr4 (496-542)||(29584364-29584410)
chr4 (496-542)||(38812263-38812309)
chr4 (496-542)||(55478061-55478107)
chr4 (496-540)||(4597994-4598038)
chr4 (494-542)||(38011853-38011901)
[»] chr2 (28 HSPs)
chr2 (348-547)||(7553344-7553543)
chr2 (274-534)||(6348721-6348990)
chr2 (347-520)||(32651854-32652027)
chr2 (341-504)||(40913151-40913309)
chr2 (358-538)||(58025-58204)
chr2 (351-539)||(41643874-41644058)
chr2 (347-546)||(43446316-43446515)
chr2 (351-542)||(19073356-19073544)
chr2 (351-542)||(34441785-34441970)
chr2 (358-542)||(6177774-6177954)
chr2 (354-471)||(18059227-18059344)
chr2 (496-541)||(31861895-31861940)
chr2 (225-308)||(7553572-7553651)
chr2 (351-471)||(15650914-15651034)
chr2 (355-401)||(38250000-38250046)
chr2 (496-546)||(41464008-41464058)
chr2 (496-541)||(19313852-19313897)
chr2 (496-541)||(33902068-33902113)
chr2 (100-147)||(7553757-7553804)
chr2 (496-543)||(17054254-17054301)
chr2 (496-543)||(17071895-17071942)
chr2 (499-544)||(7007051-7007096)
chr2 (498-543)||(11366541-11366586)
chr2 (351-473)||(18779261-18779385)
chr2 (351-472)||(27138883-27139003)
chr2 (496-541)||(41465509-41465554)
chr2 (496-540)||(13711465-13711509)
chr2 (498-542)||(31570894-31570938)
[»] chr3 (35 HSPs)
chr3 (347-538)||(48155071-48155262)
chr3 (341-540)||(29895861-29896060)
chr3 (341-540)||(54606703-54606902)
chr3 (397-538)||(13006902-13007043)
chr3 (420-538)||(5124671-5124789)
chr3 (354-542)||(40640496-40640683)
chr3 (351-541)||(49359490-49359676)
chr3 (351-540)||(19606776-19606961)
chr3 (389-497)||(11018400-11018508)
chr3 (341-541)||(42204342-42204540)
chr3 (225-322)||(29896124-29896221)
chr3 (351-538)||(38392490-38392673)
chr3 (496-546)||(7327623-7327673)
chr3 (351-473)||(7568581-7568703)
chr3 (351-401)||(32180613-32180663)
chr3 (397-542)||(42665445-42665590)
chr3 (351-472)||(44880856-44880976)
chr3 (351-395)||(26000674-26000718)
chr3 (341-401)||(43485447-43485507)
chr3 (341-401)||(47870327-47870387)
chr3 (351-434)||(7758285-7758368)
chr3 (417-545)||(45879426-45879550)
chr3 (496-541)||(45174494-45174539)
chr3 (496-541)||(51213121-51213166)
chr3 (313-345)||(29896070-29896102)
chr3 (351-395)||(47930529-47930573)
chr3 (496-543)||(26941400-26941447)
chr3 (496-543)||(40552399-40552446)
chr3 (354-400)||(11018554-11018600)
chr3 (496-542)||(46994790-46994836)
chr3 (490-519)||(11017218-11017247)
chr3 (341-394)||(42665360-42665412)
chr3 (312-341)||(54606917-54606946)
chr3 (496-540)||(11835746-11835790)
chr3 (494-542)||(22450958-22451006)
[»] chr6 (13 HSPs)
chr6 (348-538)||(4488441-4488631)
chr6 (347-544)||(25440955-25441152)
chr6 (354-542)||(19631748-19631932)
chr6 (351-454)||(34993914-34994017)
chr6 (351-401)||(26301787-26301837)
chr6 (351-542)||(11084016-11084201)
chr6 (496-542)||(4318962-4319008)
chr6 (494-541)||(7235171-7235218)
chr6 (496-539)||(30338478-30338521)
chr6 (496-542)||(5627390-5627436)
chr6 (496-542)||(8513232-8513278)
chr6 (494-540)||(20768087-20768133)
chr6 (354-434)||(30341127-30341207)
[»] chr5 (29 HSPs)
chr5 (351-538)||(8777275-8777462)
chr5 (358-542)||(25513770-25513954)
chr5 (344-538)||(13887240-13887434)
chr5 (353-541)||(26411293-26411481)
chr5 (351-542)||(22616493-22616679)
chr5 (351-483)||(31878437-31878569)
chr5 (341-471)||(25653650-25653780)
chr5 (351-545)||(21320747-21320937)
chr5 (341-469)||(10053291-10053419)
chr5 (351-472)||(33163578-33163701)
chr5 (341-472)||(33752900-33753031)
chr5 (351-543)||(36055736-36055924)
chr5 (347-391)||(25521701-25521745)
chr5 (341-473)||(33848539-33848671)
chr5 (496-541)||(15724490-15724535)
chr5 (341-430)||(21266126-21266215)
chr5 (351-472)||(41417441-41417562)
chr5 (341-401)||(12081119-12081179)
chr5 (341-401)||(13380635-13380695)
chr5 (496-542)||(22974212-22974258)
chr5 (496-541)||(22019632-22019677)
chr5 (496-541)||(31786776-31786821)
chr5 (358-473)||(10237478-10237593)
chr5 (496-542)||(8742017-8742063)
chr5 (496-542)||(12910349-12910395)
chr5 (496-542)||(19119858-19119904)
chr5 (496-542)||(27330305-27330351)
chr5 (496-541)||(7693230-7693275)
chr5 (496-544)||(30628738-30628786)
[»] scaffold0312 (2 HSPs)
scaffold0312 (341-542)||(8983-9184)
scaffold0312 (303-341)||(8930-8968)
[»] scaffold0262 (2 HSPs)
scaffold0262 (341-401)||(12018-12078)
scaffold0262 (496-541)||(12141-12186)
[»] scaffold0685 (1 HSPs)
scaffold0685 (496-547)||(6625-6676)
[»] scaffold0291 (1 HSPs)
scaffold0291 (496-539)||(7889-7932)
[»] scaffold0061 (1 HSPs)
scaffold0061 (496-539)||(43959-44002)
[»] scaffold0017 (1 HSPs)
scaffold0017 (496-539)||(154785-154828)
[»] scaffold0050 (1 HSPs)
scaffold0050 (351-473)||(5654-5776)
[»] scaffold0009 (1 HSPs)
scaffold0009 (496-542)||(100820-100866)


Alignment Details
Target: chr8 (Bit Score: 346; Significance: 0; HSPs: 19)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 346; E-Value: 0
Query Start/End: Original strand, 219 - 601
Target Start/End: Original strand, 1835105 - 1835497
Alignment:
Q  219 ctaaagaattttggagagaataggaggaagaaatctggaattttgataagctataaggaatttgtgcgatggggaagatggaatgaattggttgtatcca 318  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1835105 ctaaagaattttggagagaattggaggaagaaatctggaattttgataagctataaggaatttgtgcgatggggaagatggaatgaattggttgtatcca 1835204  T
Q  319 atttagatgcataagttttaagaata----------acaaaaatgtttaattttgatttaatcaaggacacatttgcaataagtaaaaatatagtggtac 408  Q
    ||||||||||||||||||||||||||          ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  1835205 atttagatgcataagttttaagaataaaaaaaaataacaaaaatgtttaattttgatttaatcaaggacacatttgcgataagtaaaaatatagtggtac 1835304  T
Q  409 acaatatgaacaaatgtacaatacacactataatttgatgtgacattcattaaatacacaaatgcattatgattggtcattctaatgacttcaccaaaaa 508  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1835305 acaatatgaacaaatgtacaatacacactataatttgatgtgacattcattaaatacacaaatgcattatgattggtcattctaatgacttcaccaaaaa 1835404  T
Q  509 agtcattctaacaacttcaccatagaattttcctaaaatcttttcctccaagtccccaaaccccaatcgcccaaacggactctctgcttctcc 601  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  1835405 agtcattctaacaacttcaccatagaattttcctaaaatcttttcctccaagtccccaaaccccaatcgcccaaacggactctccgcttctcc 1835497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 219 - 546
Target Start/End: Original strand, 1878956 - 1879283
Alignment:
Q  219 ctaaagaattttggagagaataggaggaagaaatctggaattttgataagctataaggaatttgtgcgatggggaagatggaatgaattggttgtatcca 318  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1878956 ctaaagaattttggagagaatgggaggaagaaatctggaattttgataagctataaggaatttgtgcgatggggaagatggaatgaattggttgtatcca 1879055  T
Q  319 atttagatgcataagttttaagaataacaaaaatgtttaattttgatttaatcaaggacacatttgcaataagtaaaaatatagtggtacacaatatgaa 418  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1879056 atttagatgcataagttttaagaataacaaaaatgtttaattttgatttaatcaaggacacatttgcaataagtaaaaatatagtggtacacaatatgaa 1879155  T
Q  419 caaatgtacaatacacactataatttgatgtgacattcattaaatacacaaatgcattatgattggtcattctaatgacttcaccaaaaaagtcattcta 518  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1879156 caaatgtacaatacacactataatttgatgtgacattcattaaatacacaaatgcattatgattggtcattctaatgacttcaccaaaaaagtcattcta 1879255  T
Q  519 acaacttcaccatagaattttcctaaaa 546  Q
    ||||||||||||||||||||||||||||    
T  1879256 acaacttcaccatagaattttcctaaaa 1879283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 134; E-Value: 2e-69
Query Start/End: Original strand, 18 - 151
Target Start/End: Original strand, 1834904 - 1835037
Alignment:
Q  18 aaaattagaaacaattaatctgtcattgtattgtacatatgctcgtactgtgttttaggggtgtttccacaagctcaacaaagtcttgaattggtatgat 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1834904 aaaattagaaacaattaatctgtcattgtattgtacatatgctcgtactgtgttttaggggtgtttccacaagctcaacaaagtcttgaattggtatgat 1835003  T
Q  118 aagtgaaccctaaaggaagatgaagatgaagaag 151  Q
    ||||||||||||||||||||||||||||||||||    
T  1835004 aagtgaaccctaaaggaagatgaagatgaagaag 1835037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 134; E-Value: 2e-69
Query Start/End: Original strand, 18 - 151
Target Start/End: Original strand, 1878755 - 1878888
Alignment:
Q  18 aaaattagaaacaattaatctgtcattgtattgtacatatgctcgtactgtgttttaggggtgtttccacaagctcaacaaagtcttgaattggtatgat 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1878755 aaaattagaaacaattaatctgtcattgtattgtacatatgctcgtactgtgttttaggggtgtttccacaagctcaacaaagtcttgaattggtatgat 1878854  T
Q  118 aagtgaaccctaaaggaagatgaagatgaagaag 151  Q
    ||||||||||||||||||||||||||||||||||    
T  1878855 aagtgaaccctaaaggaagatgaagatgaagaag 1878888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 352 - 539
Target Start/End: Original strand, 35735844 - 35736030
Alignment:
Q  352 tgtttaattttgatttaatcaaggacacatttgcaataagtaaaaatatagtggtacacaatatgaacaaatgtacaatacacactataatttgatgtga 451  Q
    ||||||||||| ||||||||| ||||||| ||| |||| ||||| ||||||||| ||||  ||||| ||||||| ||||||||  |||||||| | | ||    
T  35735844 tgtttaatttttatttaatca-ggacacaattgtaataggtaaagatatagtggcacaccttatgagcaaatgtgcaatacaccatataatttaacggga 35735942  T
Q  452 cattcattaaatacacaaatgcattatgattggtcattctaatgacttcaccaaaaaagtcattctaacaacttcaccatagaatttt 539  Q
    ||  ||||||||||||||||||   |||||| ||| |   | | ||||||||||||||||||||||||  ||||||||||||||||||    
T  35735943 cacacattaaatacacaaatgctcaatgattcgtcgtatgattaacttcaccaaaaaagtcattctaatgacttcaccatagaatttt 35736030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 353 - 473
Target Start/End: Complemental strand, 3038590 - 3038470
Alignment:
Q  353 gtttaattttgatttaatcaaggacacatttgcaataagtaaaaatatagtggtacacaatatgaacaaatgtacaatacacactataatttgatgtgac 452  Q
    |||||||||||||||||||| ||||||| |||||||||||||| ||||| ||  ||||  |||| ||| |||| ||||||||  |||||| ||| |||||    
T  3038590 gtttaattttgatttaatcagggacacaattgcaataagtaaagatataatgacacaccttatggacagatgtgcaatacactgtataatctgacgtgac 3038491  T
Q  453 attcattaaatacacaaatgc 473  Q
    ||  |||||||| ||||||||    
T  3038490 ataaattaaatagacaaatgc 3038470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 351 - 542
Target Start/End: Original strand, 4108776 - 4108961
Alignment:
Q  351 atgtttaattttgatttaatcaaggacacatttgcaataagtaaaaatatagtggtacacaatatgaacaaatgtacaatacacactataatttgatgtg 450  Q
    |||||||||||||||||||||| ||||||| |||||||||||||| |||||  |  ||||  ||||  ||||||| ||||||||  |||||  ||| |||    
T  4108776 atgtttaattttgatttaatcagggacacaattgcaataagtaaagatataacgacacaccttatgggcaaatgtgcaatacaccatataa--tgacgtg 4108873  T
Q  451 acattcattaaatacacaaatgcattatgattggtcattctaatgacttcaccaaaaaagtcattctaacaacttcaccatagaattttcct 542  Q
     |||| |||||||||||||||     |||||||||||||    | |||| ||||||||||||||| | |  ||||||||||| |||||||||    
T  4108874 gcattaattaaatacacaaatattcaatgattggtcatt----taactttaccaaaaaagtcattttcatgacttcaccataaaattttcct 4108961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 351 - 401
Target Start/End: Original strand, 6267367 - 6267417
Alignment:
Q  351 atgtttaattttgatttaatcaaggacacatttgcaataagtaaaaatata 401  Q
    |||||||||||||||||||||||||||| | |||||||||||||| |||||    
T  6267367 atgtttaattttgatttaatcaaggacataattgcaataagtaaagatata 6267417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 496 - 544
Target Start/End: Original strand, 1150251 - 1150299
Alignment:
Q  496 acttcaccaaaaaagtcattctaacaacttcaccatagaattttcctaa 544  Q
    |||||||||||||||||||||| |  |||||||||||||||||||||||    
T  1150251 acttcaccaaaaaagtcattcttatgacttcaccatagaattttcctaa 1150299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 100 - 147
Target Start/End: Complemental strand, 24218514 - 24218467
Alignment:
Q  100 gtcttgaattggtatgataagtgaaccctaaaggaagatgaagatgaa 147  Q
    |||| |||||||||||||| | ||||||||||||||||||||||||||    
T  24218514 gtctagaattggtatgatatgcgaaccctaaaggaagatgaagatgaa 24218467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 351 - 393
Target Start/End: Original strand, 23176648 - 23176690
Alignment:
Q  351 atgtttaattttgatttaatcaaggacacatttgcaataagta 393  Q
    |||||||||||||||||||||| ||||||| ||||||||||||    
T  23176648 atgtttaattttgatttaatcagggacacaattgcaataagta 23176690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 496 - 541
Target Start/End: Complemental strand, 15009286 - 15009241
Alignment:
Q  496 acttcaccaaaaaagtcattctaacaacttcaccatagaattttcc 541  Q
    |||||||||||||||||||||| |  ||||||||||||||||||||    
T  15009286 acttcaccaaaaaagtcattcttatgacttcaccatagaattttcc 15009241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 496 - 541
Target Start/End: Complemental strand, 41362562 - 41362517
Alignment:
Q  496 acttcaccaaaaaagtcattctaacaacttcaccatagaattttcc 541  Q
    |||||||||||||||||||| | | |||||||||||||||||||||    
T  41362562 acttcaccaaaaaagtcattttcataacttcaccatagaattttcc 41362517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 494 - 541
Target Start/End: Complemental strand, 33906270 - 33906223
Alignment:
Q  494 tgacttcaccaaaaaagtcattctaacaacttcaccatagaattttcc 541  Q
    ||||||||||| |||||||||||| | || ||||||||||||||||||    
T  33906270 tgacttcaccagaaaagtcattctcataatttcaccatagaattttcc 33906223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 496 - 542
Target Start/End: Original strand, 24823418 - 24823464
Alignment:
Q  496 acttcaccaaaaaagtcattctaacaacttcaccatagaattttcct 542  Q
    |||||||||||||||||||||| | ||||| ||||||| ||||||||    
T  24823418 acttcaccaaaaaagtcattctcataactttaccatagtattttcct 24823464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 496 - 542
Target Start/End: Original strand, 43643741 - 43643787
Alignment:
Q  496 acttcaccaaaaaagtcattctaacaacttcaccatagaattttcct 542  Q
    |||||||||||| ||||||||| |  |||||||||||||||||||||    
T  43643741 acttcaccaaaatagtcattctcatgacttcaccatagaattttcct 43643787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 496 - 541
Target Start/End: Original strand, 10555348 - 10555393
Alignment:
Q  496 acttcaccaaaaaagtcattctaacaacttcaccatagaattttcc 541  Q
    |||||||||||||||||||||| |  |||||||| |||||||||||    
T  10555348 acttcaccaaaaaagtcattctcatgacttcaccgtagaattttcc 10555393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 487 - 539
Target Start/End: Original strand, 6446700 - 6446752
Alignment:
Q  487 attctaatgacttcaccaaaaaagtcattctaacaacttcaccatagaatttt 539  Q
    ||||| |||||||||||| |||||||||| | |  ||||||||||||||||||    
T  6446700 attctcatgacttcaccagaaaagtcattatcatgacttcaccatagaatttt 6446752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 496 - 544
Target Start/End: Original strand, 27082984 - 27083032
Alignment:
Q  496 acttcaccaaaaaagtcattctaacaacttcaccatagaattttcctaa 544  Q
    ||||||||| |||||||| ||| |  |||||||||||||||||||||||    
T  27082984 acttcaccagaaaagtcagtctgatgacttcaccatagaattttcctaa 27083032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 227; Significance: 1e-125; HSPs: 22)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 225 - 538
Target Start/End: Original strand, 21263775 - 21264094
Alignment:
Q  225 aattttggagagaataggaggaagaaatctggaattttgat-aagctata-aggaatttgtgcgatggggaagatggaatgaattggttgtatccaattt 322  Q
    ||||||||||||||| ||||||||||||||||||||||||| ||| ||   ||| |||||| |||||||||||||||||||||||||| |||||||||||    
T  21263775 aattttggagagaatgggaggaagaaatctggaattttgatgaagttaccgagggatttgttcgatggggaagatggaatgaattggtcgtatccaattt 21263874  T
Q  323 agatgcataagttttaagaataa----caaaaatgtttaattttgatttaatcaaggacacatttgcaataagtaaaaatatagtggtacacaatatgaa 418  Q
    |||||||||||||||||||| ||    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||    
T  21263875 agatgcataagttttaagaaaaaaaaacaaaaatgtttaattttgatttaatcaaggacacaattgcaataagtaaaaatatagtggtacaccatatgaa 21263974  T
Q  419 caaatgtacaatacacactataatttgatgtgacattcattaaatacacaaatgcattatgattggtcattctaatgacttcaccaaaaaagtcattcta 518  Q
    ||||||||||||||||| |||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||| || ||    
T  21263975 caaatgtacaatacacattataatttgatgtgacattcattaaacacacaactgcattatgattggtcattctaatgacttcaccaaaaaagtctttata 21264074  T
Q  519 acaacttcaccatagaattt 538  Q
    ||||||||||||||||||||    
T  21264075 acaacttcaccatagaattt 21264094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 341 - 542
Target Start/End: Complemental strand, 421589 - 421387
Alignment:
Q  341 aataacaaaaatgtttaattttgatttaatcaaggacacatttgcaataagtaaaaatatagtggtacacaatatgaacaaatgtacaatacacactata 440  Q
    ||||| |||||||||||||||||||||||||||||||||| ||||||| |||||| ||||| ||| |||   ||| |  |||||| ||||| ||  ||||    
T  421589 aataataaaaatgtttaattttgatttaatcaaggacacaattgcaattagtaaagatataatggaacatcgtataagtaaatgtgcaataaactgtata 421490  T
Q  441 atttgatgtgacattcattaaatacacaaatgcattatgattggtcattctaatgacttca-ccaaaaaagtcattctaacaacttcaccatagaatttt 539  Q
    ||||||  |||||| |||||||||||||||||    ||||||| ||||||| ||||||||| | |||||||||||||| | ||||||| |||||||||||    
T  421489 atttgacatgacatacattaaatacacaaatgttcaatgattgatcattctcatgacttcagcaaaaaaagtcattctcataacttcatcatagaatttt 421390  T
Q  540 cct 542  Q
    |||    
T  421389 cct 421387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 351 - 543
Target Start/End: Original strand, 13876781 - 13876969
Alignment:
Q  351 atgtttaattttgatttaatcaaggacacatttgcaataagtaaaaatatagtggtacacaatatgaacaaatgtacaatacacactataatttgatgtg 450  Q
    |||||||||||||||||||||||||| ||| ||||||||| |||||||||| ||  ||||  ||||  |||||||  |||||||  ||| || ||| |||    
T  13876781 atgtttaattttgatttaatcaaggatacaattgcaataactaaaaatataatgacacactttatgggcaaatgtgtaatacaccatatgatatgacgtg 13876880  T
Q  451 acattcattaaatacacaaatgcattatgattggtcattctaatgacttcaccaaaaaagtcattctaacaacttcaccatagaattttccta 543  Q
     |||| ||||||||||||||| |   ||||||| |||||    | ||||||||| |||||||||| | | |||||||||||||||||||||||    
T  13876881 gcattgattaaatacacaaatactcaatgattgatcatt----taacttcaccataaaagtcattttcataacttcaccatagaattttccta 13876969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 351 - 473
Target Start/End: Original strand, 10758162 - 10758284
Alignment:
Q  351 atgtttaattttgatttaatcaaggacacatttgcaataagtaaaaatatagtggtacacaatatgaacaaatgtacaatacacactataatttgatgtg 450  Q
    |||||||||||||||||||| | ||||||| |||||||||||||||||||| ||  ||||| |||   ||||||| ||||||||  |||||| |||||||    
T  10758162 atgtttaattttgatttaattagggacacaattgcaataagtaaaaatataatgacacacactataggcaaatgttcaatacaccatataatctgatgtg 10758261  T
Q  451 acattcattaaatacacaaatgc 473  Q
     |||  |||||||||||||||||    
T  10758262 gcatgaattaaatacacaaatgc 10758284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 351 - 546
Target Start/End: Complemental strand, 16132661 - 16132470
Alignment:
Q  351 atgtttaattttgatttaatcaaggacacatttgcaataagtaaaaatatagtggtacacaatatgaacaaatgtacaatacacactataatttgatgtg 450  Q
    ||||||||||||||||||||||  |||||| |||||||||||||| ||||| ||  ||||| ||||  ||||||| ||||||||  |||||| | | ||     
T  16132661 atgtttaattttgatttaatcagagacacaattgcaataagtaaagatataatgacacacattatgtgcaaatgtgcaatacaccgtataatctcacgtt 16132562  T
Q  451 acattcattaaatacacaaatgcattatgattggtcattctaatgacttcaccaaaaaagtcattctaacaacttcaccatagaattttcctaaaa 546  Q
     |||  |||||||||||||||||   || ||| | ||||    | |||||||||||||||||| ||||   |||||||||||||||||||||||||    
T  16132561 gcatggattaaatacacaaatgctcaataatttgccatt----taacttcaccaaaaaagtcaatctattgacttcaccatagaattttcctaaaa 16132470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 351 - 473
Target Start/End: Complemental strand, 27118516 - 27118394
Alignment:
Q  351 atgtttaattttgatttaatcaaggacacatttgcaataagtaaaaatatagtggtacacaatatgaacaaatgtacaatacacactataatttgatgtg 450  Q
    |||||||||||||||||||||| ||||||| |||||||||||||| ||||| ||  ||||  ||||||||||||| |||||||   |||||| ||| |||    
T  27118516 atgtttaattttgatttaatcagggacacaattgcaataagtaaagatataatgacacaccttatgaacaaatgtgcaatacatcatataatatgacgtg 27118417  T
Q  451 acattcattaaatacacaaatgc 473  Q
     |||  |||||||||| ||||||    
T  27118416 gcatggattaaatacataaatgc 27118394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 351 - 487
Target Start/End: Complemental strand, 15964286 - 15964150
Alignment:
Q  351 atgtttaattttgatttaatcaaggacacatttgcaataagtaaaaatatagtggtacacaatatgaacaaatgtacaatacacactataatttgatgtg 450  Q
    |||||||||||||||||||||| ||||||| |||  || |||||  ||||| ||  |||   |||| |||||||| ||||||||  |||||||||| |||    
T  15964286 atgtttaattttgatttaatcagggacacaattgatatcagtaagtatataatgacacatcttatggacaaatgtgcaatacactatataatttgacgtg 15964187  T
Q  451 acattcattaaatacacaaatgcattatgattggtca 487  Q
    ||||  ||||||||||||||||| | |||||||||||    
T  15964186 acatagattaaatacacaaatgcttaatgattggtca 15964150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 341 - 471
Target Start/End: Complemental strand, 28012263 - 28012132
Alignment:
Q  341 aataacaaaaatgtttaattttgatttaatcaaggacacatttgcaata--agtaaaaatatagtggtacacaatatgaacaaatgtacaatacacacta 438  Q
    ||||| |||||||||||||||||||||||||| ||| ||| ||  ||||  |||||| ||||||| | |||   || || ||||||| ||||||||  ||    
T  28012263 aataataaaaatgtttaattttgatttaatca-ggatacaattataatataagtaaagatatagtagcacatcttaggagcaaatgtgcaatacaccata 28012165  T
Q  439 taatttgatgtgacattcattaaatacacaaat 471  Q
    |||||| ||||||||| ||||||||||||||||    
T  28012164 taatttaatgtgacatgcattaaatacacaaat 28012132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 496 - 542
Target Start/End: Original strand, 37619031 - 37619077
Alignment:
Q  496 acttcaccaaaaaagtcattctaacaacttcaccatagaattttcct 542  Q
    |||||||||||||||||||||| | ||||||||||||||||||||||    
T  37619031 acttcaccaaaaaagtcattcttataacttcaccatagaattttcct 37619077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 496 - 544
Target Start/End: Complemental strand, 30254465 - 30254417
Alignment:
Q  496 acttcaccaaaaaagtcattctaacaacttcaccatagaattttcctaa 544  Q
    |||||| ||||||||||||||| | ||||||||||||||||||||||||    
T  30254465 acttcaacaaaaaagtcattcttataacttcaccatagaattttcctaa 30254417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 485 - 541
Target Start/End: Complemental strand, 47279215 - 47279159
Alignment:
Q  485 tcattctaatgacttcaccaaaaaagtcattctaacaacttcaccatagaattttcc 541  Q
    ||||||| ||||||||||||||||||||||||| |  ||||||||||||| ||||||    
T  47279215 tcattctcatgacttcaccaaaaaagtcattctcatgacttcaccatagatttttcc 47279159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 303 - 341
Target Start/End: Complemental strand, 421642 - 421604
Alignment:
Q  303 gaattggttgtatccaatttagatgcataagttttaaga 341  Q
    |||||||| ||||||||||||||||||||||||||||||    
T  421642 gaattggtagtatccaatttagatgcataagttttaaga 421604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 498 - 542
Target Start/End: Complemental strand, 15382972 - 15382928
Alignment:
Q  498 ttcaccaaaaaagtcattctaacaacttcaccatagaattttcct 542  Q
    |||||||||||||||||| | | ||||||||||||||||||||||    
T  15382972 ttcaccaaaaaagtcatttttataacttcaccatagaattttcct 15382928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 487 - 542
Target Start/End: Original strand, 4150481 - 4150536
Alignment:
Q  487 attctaatgacttcaccaaaaaagtcattctaacaacttcaccatagaattttcct 542  Q
    ||||| |||||||||||| |||||||||| | |  |||||||||||||||||||||    
T  4150481 attctcatgacttcaccagaaaagtcattatcatgacttcaccatagaattttcct 4150536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 496 - 539
Target Start/End: Complemental strand, 15752070 - 15752027
Alignment:
Q  496 acttcaccaaaaaagtcattctaacaacttcaccatagaatttt 539  Q
    |||||||||||||||||||||| |  ||||||||||||||||||    
T  15752070 acttcaccaaaaaagtcattctcatgacttcaccatagaatttt 15752027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 496 - 543
Target Start/End: Complemental strand, 18422692 - 18422645
Alignment:
Q  496 acttcaccaaaaaagtcattctaacaacttcaccatagaattttccta 543  Q
    |||||||||||||||||||| | |  ||||||||||||||||||||||    
T  18422692 acttcaccaaaaaagtcatttttatgacttcaccatagaattttccta 18422645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 496 - 547
Target Start/End: Complemental strand, 52382663 - 52382612
Alignment:
Q  496 acttcaccaaaaaagtcattctaacaacttcaccatagaattttcctaaaat 547  Q
    |||||||| || |||||||| |||||||||||||||||||||| || |||||    
T  52382663 acttcaccgaagaagtcattttaacaacttcaccatagaatttcccaaaaat 52382612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 496 - 542
Target Start/End: Complemental strand, 1547328 - 1547282
Alignment:
Q  496 acttcaccaaaaaagtcattctaacaacttcaccatagaattttcct 542  Q
    ||||||||| |||||||||||| |  |||||||||||||||||||||    
T  1547328 acttcaccagaaaagtcattctcatgacttcaccatagaattttcct 1547282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 496 - 542
Target Start/End: Original strand, 10182143 - 10182189
Alignment:
Q  496 acttcaccaaaaaagtcattctaacaacttcaccatagaattttcct 542  Q
    |||||||||||||||||||| | |  |||||||||||||||||||||    
T  10182143 acttcaccaaaaaagtcattttcatgacttcaccatagaattttcct 10182189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 496 - 542
Target Start/End: Original strand, 49410560 - 49410606
Alignment:
Q  496 acttcaccaaaaaagtcattctaacaacttcaccatagaattttcct 542  Q
    |||||||| |||||||||||  || ||||||||||||||||||||||    
T  49410560 acttcaccgaaaaagtcatttgaagaacttcaccatagaattttcct 49410606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 496 - 541
Target Start/End: Original strand, 27227612 - 27227657
Alignment:
Q  496 acttcaccaaaaaagtcattctaacaacttcaccatagaattttcc 541  Q
    |||||||||||||| ||||||| |  ||||||||||||||||||||    
T  27227612 acttcaccaaaaaaatcattctcatgacttcaccatagaattttcc 27227657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 496 - 544
Target Start/End: Complemental strand, 30254899 - 30254851
Alignment:
Q  496 acttcaccaaaaaagtcattctaacaacttcaccatagaattttcctaa 544  Q
    |||||| ||||||||||||| | |  |||||||||||||||||||||||    
T  30254899 acttcatcaaaaaagtcattattatgacttcaccatagaattttcctaa 30254851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 212; Significance: 1e-116; HSPs: 24)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 219 - 538
Target Start/End: Complemental strand, 47190389 - 47190058
Alignment:
Q  219 ctaaagaattttggagagaataggaggaagaaatctggaattttgat-aagctata-aggaatttgtgcgatggggaagatggaatgaattggttgtatc 316  Q
    |||| ||||||||||||| || ||||||||||||||||||||||||| |||||||  ||||||||||||||||||||||||||||||||||||| |||||    
T  47190389 ctaaggaattttggagaggatgggaggaagaaatctggaattttgatgaagctattgaggaatttgtgcgatggggaagatggaatgaattggtcgtatc 47190290  T
Q  317 caatttagatgcataagttttaagaa-------taacaaaaatgtttaattttgatttaat---caaggacacatttgcaataagtaaaaatatagtggt 406  Q
    |||||||||||||||| |||||||||       ||||||||||||||||||||||||||||   ||| || ||| |||||||||||||||||||||||||    
T  47190289 caatttagatgcataaattttaagaaaaaaaaataacaaaaatgtttaattttgatttaataatcaaagatacaattgcaataagtaaaaatatagtggt 47190190  T
Q  407 acacaatatgaacaaatgtacaatacacactataatttgatgtgacattcattaaatacacaaatgcattatgattggtcattctaatgacttcaccaaa 506  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||| |||| ||||||    
T  47190189 acaccatatgaacaaatgtacaatacacactataatttgatgtgacattcattaaacacacaactgcattatgattggtcattctaataactttaccaaa 47190090  T
Q  507 aaagtcattctaacaacttcaccatagaattt 538  Q
    ||||||||||||||||||||||  ||||||||    
T  47190089 aaagtcattctaacaacttcacagtagaattt 47190058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 18 - 151
Target Start/End: Complemental strand, 47190575 - 47190442
Alignment:
Q  18 aaaattagaaacaattaatctgtcattgtattgtacatatgctcgtactgtgttttaggggtgtttccacaagctcaacaaagtcttgaattggtatgat 117  Q
    ||||||||||||||||||||||||||| |||||| ||||||||||||   ||||||||| |||||||||||||||||||||||||| ||||  |||||||    
T  47190575 aaaattagaaacaattaatctgtcattttattgtccatatgctcgtagaatgttttaggagtgtttccacaagctcaacaaagtctggaatctgtatgat 47190476  T
Q  118 aagtgaaccctaaaggaagatgaagatgaagaag 151  Q
    ||||||||| ||||||||||||||||||||||||    
T  47190475 aagtgaaccttaaaggaagatgaagatgaagaag 47190442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 341 - 434
Target Start/End: Complemental strand, 8758486 - 8758393
Alignment:
Q  341 aataacaaaaatgtttaattttgatttaatcaaggacacatttgcaataagtaaaaatatagtggtacacaatatgaacaaatgtacaatacac 434  Q
    ||||| |||||||||||||||| |||||||||||  |||| |||||||||||||||||||||| | ||||  |||||| |||||| ||||||||    
T  8758486 aataataaaaatgtttaattttaatttaatcaagagcacaattgcaataagtaaaaatatagtagcacaccgtatgaataaatgtgcaatacac 8758393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 351 - 472
Target Start/End: Original strand, 22955174 - 22955295
Alignment:
Q  351 atgtttaattttgatttaatcaaggacacatttgcaataagtaaaaatatagtggtacacaatatgaacaaatgtacaatacacactataatttgatgtg 450  Q
    ||||||||| |||||||||| | ||||||| |||||||||||||| ||| | ||  | ||  ||||| ||||||| ||||||||  |||||||||| |||    
T  22955174 atgtttaatgttgatttaataagggacacaattgcaataagtaaagatacaatgacataccttatgagcaaatgtgcaatacaccatataatttgacgtg 22955273  T
Q  451 acattcattaaatacacaaatg 472  Q
    ||||  ||||||||||||||||    
T  22955274 acatggattaaatacacaaatg 22955295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 351 - 471
Target Start/End: Complemental strand, 7743105 - 7742985
Alignment:
Q  351 atgtttaattttgatttaatcaaggacacatttgcaataagtaaaaatatagtggtacacaatatgaacaaatgtacaatacacactataatttgatgtg 450  Q
    |||||||||||| ||||||||| || |||| |||||||||||||| ||||| ||  || |  |||| |||||||||||||||||  |||||| | | |||    
T  7743105 atgtttaattttaatttaatcaggggcacaattgcaataagtaaagatataatgacacgccttatggacaaatgtacaatacaccatataatctaacgtg 7743006  T
Q  451 acattcattaaatacacaaat 471  Q
    ||||  |||||||||||||||    
T  7743005 acatagattaaatacacaaat 7742985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 341 - 401
Target Start/End: Complemental strand, 19786480 - 19786420
Alignment:
Q  341 aataacaaaaatgtttaattttgatttaatcaaggacacatttgcaataagtaaaaatata 401  Q
    ||||| ||||||||||||||||||||||||||||||| || |||||||||||||| |||||    
T  19786480 aataataaaaatgtttaattttgatttaatcaaggactcaattgcaataagtaaagatata 19786420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 351 - 472
Target Start/End: Original strand, 4618617 - 4618738
Alignment:
Q  351 atgtttaattttgatttaatcaaggacacatttgcaataagtaaaaatatagtggtacacaatatgaacaaatgtacaatacacactataatttgatgtg 450  Q
    |||||||||||||||||||| | | | ||| ||||||||| |||| ||||| ||  |||   ||||||||||||| ||||||||  |||||||||| | |    
T  4618617 atgtttaattttgatttaatgaggtatacaattgcaataaataaatatataatgacacattttatgaacaaatgtgcaatacaccatataatttgaagcg 4618716  T
Q  451 acattcattaaatacacaaatg 472  Q
    ||||  ||||||||||||||||    
T  4618717 acatgaattaaatacacaaatg 4618738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 351 - 473
Target Start/End: Original strand, 37854158 - 37854278
Alignment:
Q  351 atgtttaattttgatttaatcaaggacacatttgcaataagtaaaaatatagtggtacacaatatgaacaaatgtacaatacacactataatttgatgtg 450  Q
    |||||||||||||||||||||| ||||||| ||||||| |||||| |||||     | ||  ||||| ||||||| ||||||||  |||||| ||| |||    
T  37854158 atgtttaattttgatttaatcagggacacaattgcaatcagtaaagatata--aacataccttatgagcaaatgtgcaatacaccatataatgtgacgtg 37854255  T
Q  451 acattcattaaatacacaaatgc 473  Q
    ||||  |||||||||||||||||    
T  37854256 acatggattaaatacacaaatgc 37854278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 351 - 401
Target Start/End: Complemental strand, 5781702 - 5781652
Alignment:
Q  351 atgtttaattttgatttaatcaaggacacatttgcaataagtaaaaatata 401  Q
    |||||||||||||||||||||||||||||| ||||||||| |||| |||||    
T  5781702 atgtttaattttgatttaatcaaggacacaattgcaataaataaagatata 5781652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 353 - 541
Target Start/End: Original strand, 8133423 - 8133609
Alignment:
Q  353 gtttaattttgatttaatcaaggacacatttgcaataagtaaaaatatagtggtacacaatatgaacaaatgtacaatacacactataatttgatgtgac 452  Q
    |||||||||||||||||| | |||| || |||||||||||||  ||||| ||  | ||  ||| | |||| || ||||||||  |||||| ||| ||| |    
T  8133423 gtttaattttgatttaattagggacgcaattgcaataagtaatgatataatgacagaccttataagcaaacgtgcaatacaccatataatctgacgtgtc 8133522  T
Q  453 attcattaaatacacaaatgcattatgattggtcattctaatgacttcaccaaaaaagtcattctaacaacttcaccatagaattttcc 541  Q
     |  ||||||||||||||||| | ||||||| ||||| | |  |||||||||||||||| ||||| |  |||||||  |||||||||||    
T  8133523 ttgaattaaatacacaaatgcttaatgattgatcattttta--acttcaccaaaaaagttattcttatgacttcacagtagaattttcc 8133609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 496 - 542
Target Start/End: Complemental strand, 18797349 - 18797303
Alignment:
Q  496 acttcaccaaaaaagtcattctaacaacttcaccatagaattttcct 542  Q
    |||||||||||||||||||||| |  |||||||||||||||||||||    
T  18797349 acttcaccaaaaaagtcattctcatgacttcaccatagaattttcct 18797303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 496 - 540
Target Start/End: Complemental strand, 24211761 - 24211717
Alignment:
Q  496 acttcaccaaaaaagtcattctaacaacttcaccatagaattttc 540  Q
    |||||||||||||||||||||| |  |||||||||||||||||||    
T  24211761 acttcaccaaaaaagtcattcttatgacttcaccatagaattttc 24211717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 496 - 543
Target Start/End: Original strand, 241024 - 241071
Alignment:
Q  496 acttcaccaaaaaagtcattctaacaacttcaccatagaattttccta 543  Q
    |||||||||||||||||||| | |  ||||||||||||||||||||||    
T  241024 acttcaccaaaaaagtcattttcatgacttcaccatagaattttccta 241071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 496 - 542
Target Start/End: Original strand, 17842727 - 17842773
Alignment:
Q  496 acttcaccaaaaaagtcattctaacaacttcaccatagaattttcct 542  Q
    |||||||||||||||||||| | |  |||||||||||||||||||||    
T  17842727 acttcaccaaaaaagtcatttttatgacttcaccatagaattttcct 17842773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 496 - 546
Target Start/End: Original strand, 31579210 - 31579260
Alignment:
Q  496 acttcaccaaaaaagtcattctaacaacttcaccatagaattttcctaaaa 546  Q
    |||||||||||||| | ||||| |  |||||||||||||||||||||||||    
T  31579210 acttcaccaaaaaaattattcttatgacttcaccatagaattttcctaaaa 31579260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 496 - 542
Target Start/End: Complemental strand, 40381985 - 40381939
Alignment:
Q  496 acttcaccaaaaaagtcattctaacaacttcaccatagaattttcct 542  Q
    ||||||||| |||||||||||| | ||||||||| ||||||||||||    
T  40381985 acttcaccagaaaagtcattctcataacttcaccgtagaattttcct 40381939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 351 - 401
Target Start/End: Complemental strand, 49002410 - 49002360
Alignment:
Q  351 atgtttaattttgatttaatcaaggacacatttgcaataagtaaaaatata 401  Q
    ||||||||||||||||||||||   ||||| |||||||||||||| |||||    
T  49002410 atgtttaattttgatttaatcagacacacaattgcaataagtaaagatata 49002360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 351 - 392
Target Start/End: Complemental strand, 4902506 - 4902465
Alignment:
Q  351 atgtttaattttgatttaatcaaggacacatttgcaataagt 392  Q
    |||||||||||||||||||||| ||||||  |||||||||||    
T  4902506 atgtttaattttgatttaatcagggacactattgcaataagt 4902465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 496 - 541
Target Start/End: Complemental strand, 7334814 - 7334769
Alignment:
Q  496 acttcaccaaaaaagtcattctaacaacttcaccatagaattttcc 541  Q
    |||||| ||||||||||||||| || |||||||| |||||||||||    
T  7334814 acttcatcaaaaaagtcattctcacgacttcaccgtagaattttcc 7334769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 312 - 341
Target Start/End: Complemental strand, 8758530 - 8758501
Alignment:
Q  312 gtatccaatttagatgcataagttttaaga 341  Q
    ||||||||||||||||||||||||||||||    
T  8758530 gtatccaatttagatgcataagttttaaga 8758501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 496 - 541
Target Start/End: Complemental strand, 12165772 - 12165727
Alignment:
Q  496 acttcaccaaaaaagtcattctaacaacttcaccatagaattttcc 541  Q
    ||||||||| |||||||||| |||| |||||||| |||||||||||    
T  12165772 acttcaccagaaaagtcattttaacgacttcaccgtagaattttcc 12165727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 496 - 541
Target Start/End: Complemental strand, 27283764 - 27283719
Alignment:
Q  496 acttcaccaaaaaagtcattctaacaacttcaccatagaattttcc 541  Q
    |||||||||||||| ||||| | | |||||||||||||||||||||    
T  27283764 acttcaccaaaaaaatcatttttataacttcaccatagaattttcc 27283719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 496 - 541
Target Start/End: Complemental strand, 37109892 - 37109847
Alignment:
Q  496 acttcaccaaaaaagtcattctaacaacttcaccatagaattttcc 541  Q
    |||||||||||||||||||| | |  ||||||||||||||||||||    
T  37109892 acttcaccaaaaaagtcatttttatgacttcaccatagaattttcc 37109847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 499 - 547
Target Start/End: Original strand, 26524471 - 26524519
Alignment:
Q  499 tcaccaaaaaagtcattctaacaacttcaccatagaattttcctaaaat 547  Q
    |||||| |||||||||||| |  ||||||||||||||||||||| ||||    
T  26524471 tcaccagaaaagtcattctcatgacttcaccatagaattttccttaaat 26524519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 151; Significance: 1e-79; HSPs: 30)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 151; E-Value: 1e-79
Query Start/End: Original strand, 351 - 541
Target Start/End: Complemental strand, 37793570 - 37793380
Alignment:
Q  351 atgtttaattttgatttaatcaaggacacatttgcaataagtaaaaatatagtggtacacaatatgaacaaatgtacaatacacactataatttgatgtg 450  Q
    |||||||||||| |||||||||| |||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |    
T  37793570 atgtttaattttaatttaatcaaagacacaattgcaataagtaaaaatatagtggtacaccatatgaacaaatgtacaatacacactataatttgatgag 37793471  T
Q  451 acattcattaaatacacaaatgcattatgattggtcattctaatgacttcaccaaaaaagtcattctaacaacttcaccatagaattttcc 541  Q
    |||||||||||| |||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||  |||||||||||    
T  37793470 acattcattaaacacacaactgcattatgattgatcattctaatgacttcaccaaaaaagtcattctaacaacttcacagtagaattttcc 37793380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 130; E-Value: 5e-67
Query Start/End: Original strand, 341 - 542
Target Start/End: Complemental strand, 5812763 - 5812562
Alignment:
Q  341 aataacaaaaatgtttaattttgatttaatcaaggacacatttgcaataagtaaaaatatagtggtacacaatatgaacaaatgtacaatacacactata 440  Q
    ||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||| ||| |||||  |||||| |||||||||||||| || ||||    
T  5812763 aataacaaaaatgtttaattttgatttaatcaatgacacaattgcaataagtaaaaataaagttgtacatcatatgagcaaatgtacaatacgcaatata 5812664  T
Q  441 atttgatgtgacattcattaaatacacaaatgcattatgattggtcattctaatgacttcaccaaaaaagtcattctaacaacttcaccatagaattttc 540  Q
    ||||||||| |||| |||||||||||||||||||||||||||| ||||||||||||||||| |||||||    ||||||||||||||||||||| |||||    
T  5812663 atttgatgttacatgcattaaatacacaaatgcattatgattgatcattctaatgacttcagcaaaaaaaaatttctaacaacttcaccatagatttttc 5812564  T
Q  541 ct 542  Q
    ||    
T  5812563 ct 5812562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 120; E-Value: 4e-61
Query Start/End: Original strand, 347 - 538
Target Start/End: Original strand, 5915653 - 5915844
Alignment:
Q  347 aaaaatgtttaattttgatttaatcaaggacacatttgcaataagtaaaaatatagtggtacacaatatgaacaaatgtacaatacacactataatttga 446  Q
    |||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||| |||| | |||||||||||| | ||||| |||||||    
T  5915653 aaaaatgtttaattttgatttaatcaaggacacaattgcaacaagtaaaaatatagtggtacaccatataagcaaatgtacaatgcgcactaaaatttga 5915752  T
Q  447 tgtgacattcattaaatacacaaatgcattatgattggtcattctaatgacttcaccaaaaaagtcattctaacaacttcaccatagaattt 538  Q
    |||| ||| ||||||||||||| ||  |||||||||| |||||||||||||||||||| |||| ||||| |||| |||||||||||||||||    
T  5915753 tgtggcatgcattaaatacacagatatattatgattgatcattctaatgacttcaccagaaaaatcattttaacgacttcaccatagaattt 5915844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 98; E-Value: 6e-48
Query Start/End: Original strand, 18 - 151
Target Start/End: Complemental strand, 37793835 - 37793702
Alignment:
Q  18 aaaattagaaacaattaatctgtcattgtattgtacatatgctcgtactgtgttttaggggtgtttccacaagctcaacaaagtcttgaattggtatgat 117  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||  |||   ||||||    
T  37793835 aaaattagaaacaattaatctgtcattgtattgtccatatgctcgtactgtgttttaggagtgtttccacaagctcaacaaagtctgaaatctatatgat 37793736  T
Q  118 aagtgaaccctaaaggaagatgaagatgaagaag 151  Q
    ||||||||| ||||| ||||||||||||||||||    
T  37793735 aagtgaaccttaaagaaagatgaagatgaagaag 37793702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 86; E-Value: 8e-41
Query Start/End: Original strand, 18 - 147
Target Start/End: Complemental strand, 5813130 - 5813002
Alignment:
Q  18 aaaattagaaacaattaatctgtcattgtattgtacatatgctcgtactgtgttttaggggtgtttccacaagctcaacaaagtcttgaattggtatgat 117  Q
    ||||||||||||||||||||||||||| |||||| |||||||||||||||| ||||||| |||||| |||||||||||||||||||  ||| ||||||||    
T  5813130 aaaattagaaacaattaatctgtcattttattgtccatatgctcgtactgtattttaggagtgttttcacaagctcaacaaagtctgtaatcggtatgat 5813031  T
Q  118 aagtgaaccctaaaggaagatgaagatgaa 147  Q
    ||| |||||||||| |||||||||||||||    
T  5813030 aagcgaaccctaaa-gaagatgaagatgaa 5813002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 341 - 471
Target Start/End: Complemental strand, 22729906 - 22729777
Alignment:
Q  341 aataacaaaaatgtttaattttgatttaatcaaggacacatttgcaataagtaaaaatatagtggtacacaatatgaacaaatgtacaatacacactata 440  Q
    ||||| |||||||||||||||||||| ||||| ||||||| ||||||||||| || ||||||||| |||| |||||| ||||||| ||||||||  ||||    
T  22729906 aataataaaaatgtttaattttgattcaatca-ggacacagttgcaataagttaagatatagtggcacaccatatgagcaaatgtgcaatacaccgtata 22729808  T
Q  441 atttgatgtgacattcattaaatacacaaat 471  Q
    |||||||||| ||| ||||||||||||||||    
T  22729807 atttgatgtggcatgcattaaatacacaaat 22729777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 219 - 322
Target Start/End: Complemental strand, 5812930 - 5812825
Alignment:
Q  219 ctaaagaattttggagagaataggaggaagaaatctggaattttgat-aagcta-taaggaatttgtgcgatggggaagatggaatgaattggttgtatc 316  Q
    |||| |||||||||||||||  ||| ||||||||||| ||||||||| |||||| ||||||||||||||||| |||||||||||||||||||||||||||    
T  5812930 ctaaggaattttggagagaaagggaagaagaaatctgaaattttgatgaagctactaaggaatttgtgcgatagggaagatggaatgaattggttgtatc 5812831  T
Q  317 caattt 322  Q
    ||||||    
T  5812830 caattt 5812825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 341 - 471
Target Start/End: Original strand, 22756784 - 22756913
Alignment:
Q  341 aataacaaaaatgtttaattttgatttaatcaaggacacatttgcaataagtaaaaatatagtggtacacaatatgaacaaatgtacaatacacactata 440  Q
    ||||| |||||||||||||||||||| ||||| |||| || ||| |||||||||| ||||||||| || |  ||||| ||||||| ||||||||  ||||    
T  22756784 aataataaaaatgtttaattttgattcaatca-ggacgcaattggaataagtaaagatatagtggcacgctgtatgagcaaatgtgcaatacaccgtata 22756882  T
Q  441 atttgatgtgacattcattaaatacacaaat 471  Q
    |||||||||| ||| ||||||||||||||||    
T  22756883 atttgatgtggcatgcattaaatacacaaat 22756913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 219 - 298
Target Start/End: Complemental strand, 37793649 - 37793568
Alignment:
Q  219 ctaaagaattttggagagaataggaggaagaaatctggaattttga-taagcta-taaggaatttgtgcgatggggaagatg 298  Q
    |||| |||||||||||||||| ||||||||||||||||||||||||  |||||| | |||||||||||||||||||||||||    
T  37793649 ctaaggaattttggagagaatgggaggaagaaatctggaattttgaggaagctactgaggaatttgtgcgatggggaagatg 37793568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 354 - 542
Target Start/End: Original strand, 54995664 - 54995848
Alignment:
Q  354 tttaattttgatttaatcaaggacacatttgcaataagtaaaaatatagtggtacacaatatgaacaaatgtacaatacacactataatttgatgtgaca 453  Q
    ||||||||||||||||||| ||||||| |||||||||||||| |||||  |  ||||| |||| |||||||| |||||||   |||||  |||  |||||    
T  54995664 tttaattttgatttaatcagggacacaattgcaataagtaaagatataaagacacacattatggacaaatgtgcaatacatcatataacctgacatgaca 54995763  T
Q  454 ttcattaaatacacaaatgcattatgattggtcattctaatgacttcaccaaaaaagtcattctaacaacttcaccatagaattttcct 542  Q
    |  ||||||||| |||||| |  |||||||| ||||    | |||||||||||||||||||| | |  |||||| | ||||||||||||    
T  54995764 tggattaaatacgcaaatgtacaatgattggccatt----taacttcaccaaaaaagtcattatcatgacttcatcgtagaattttcct 54995848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 351 - 471
Target Start/End: Complemental strand, 1012483 - 1012362
Alignment:
Q  351 atgtttaattttgatttaatcaaggacacat-ttgcaataagtaaaaatatagtggtacacaatatgaacaaatgtacaatacacactataatttgatgt 449  Q
    |||||||||||||||||||||| |||||||  |||||||||||||| ||||| ||  ||||  ||||  ||||||| ||||||||  |||||| ||| ||    
T  1012483 atgtttaattttgatttaatcagggacacaaattgcaataagtaaagatataatgacacaccttatgggcaaatgtgcaatacaccatataatctgacgt 1012384  T
Q  450 gacattcattaaatacacaaat 471  Q
    |||||  |||||||||||||||    
T  1012383 gacatggattaaatacacaaat 1012362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 351 - 515
Target Start/End: Complemental strand, 9743774 - 9743614
Alignment:
Q  351 atgtttaattttgatttaatcaaggacacatttgcaataagtaaaaatatagtggtacacaatatgaacaaatgtacaatacacactataatttgatgtg 450  Q
    |||||||||||||||||||||||| ||| | |||||||||||||| || || ||  ||||  |||| | |||||| ||||||||  |||||| ||| ||     
T  9743774 atgtttaattttgatttaatcaagaacataattgcaataagtaaagatttaatgaaacactttatggaaaaatgtgcaatacaccatataatatgacgtt 9743675  T
Q  451 acattcattaaatacacaaatgcattatgattggtcattctaatgacttcaccaaaaaagtcatt 515  Q
    ||||  ||||||||||||||||    || |||||||||| ||||   ||||||||||||||||||    
T  9743674 acatggattaaatacacaaatgttcaataattggtcatt-taat---ttcaccaaaaaagtcatt 9743614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 351 - 401
Target Start/End: Complemental strand, 2708059 - 2708009
Alignment:
Q  351 atgtttaattttgatttaatcaaggacacatttgcaataagtaaaaatata 401  Q
    |||||||||||||||||||||| |||| || |||||||||||||| |||||    
T  2708059 atgtttaattttgatttaatcagggactcaattgcaataagtaaagatata 2708009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 496 - 542
Target Start/End: Original strand, 32912746 - 32912792
Alignment:
Q  496 acttcaccaaaaaagtcattctaacaacttcaccatagaattttcct 542  Q
    |||||||||||||||||||||| |  |||||||||||||||||||||    
T  32912746 acttcaccaaaaaagtcattcttatgacttcaccatagaattttcct 32912792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 496 - 542
Target Start/End: Original strand, 34361657 - 34361703
Alignment:
Q  496 acttcaccaaaaaagtcattctaacaacttcaccatagaattttcct 542  Q
    |||||||||||||||||||||| |  |||||||||||||||||||||    
T  34361657 acttcaccaaaaaagtcattcttatgacttcaccatagaattttcct 34361703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 496 - 541
Target Start/End: Complemental strand, 39397963 - 39397918
Alignment:
Q  496 acttcaccaaaaaagtcattctaacaacttcaccatagaattttcc 541  Q
    ||||||||| ||||||||||||||  ||||||||||||||||||||    
T  39397963 acttcaccataaaagtcattctaatgacttcaccatagaattttcc 39397918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 351 - 395
Target Start/End: Complemental strand, 17612520 - 17612476
Alignment:
Q  351 atgtttaattttgatttaatcaaggacacatttgcaataagtaaa 395  Q
    ||||||||||||||||||||| |||||| | ||||||||||||||    
T  17612520 atgtttaattttgatttaatctaggacataattgcaataagtaaa 17612476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 494 - 542
Target Start/End: Complemental strand, 32579491 - 32579443
Alignment:
Q  494 tgacttcaccaaaaaagtcattctaacaacttcaccatagaattttcct 542  Q
    ||||||||||| |||||||||||| | |||||||||||| |||||||||    
T  32579491 tgacttcaccagaaaagtcattctcagaacttcaccataaaattttcct 32579443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 341 - 401
Target Start/End: Original strand, 33036054 - 33036114
Alignment:
Q  341 aataacaaaaatgtttaattttgatttaatcaaggacacatttgcaataagtaaaaatata 401  Q
    ||||| || |||||||||||||||||||||||  ||| || |||||||||||||| |||||    
T  33036054 aataataataatgtttaattttgatttaatcagagactcaattgcaataagtaaagatata 33036114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 496 - 543
Target Start/End: Complemental strand, 25184158 - 25184111
Alignment:
Q  496 acttcaccaaaaaagtcattctaacaacttcaccatagaattttccta 543  Q
    |||||||||||| ||||||||| |  ||||||||||||||||||||||    
T  25184158 acttcaccaaaatagtcattctcatgacttcaccatagaattttccta 25184111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 494 - 541
Target Start/End: Original strand, 28003150 - 28003197
Alignment:
Q  494 tgacttcaccaaaaaagtcattctaacaacttcaccatagaattttcc 541  Q
    ||||||||||| |||||||||||| |  ||||||||||||||||||||    
T  28003150 tgacttcaccagaaaagtcattctcatgacttcaccatagaattttcc 28003197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 496 - 543
Target Start/End: Original strand, 37663905 - 37663952
Alignment:
Q  496 acttcaccaaaaaagtcattctaacaacttcaccatagaattttccta 543  Q
    |||||| ||||||||||||||| |  ||||||||||||||||||||||    
T  37663905 acttcatcaaaaaagtcattcttatgacttcaccatagaattttccta 37663952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 496 - 539
Target Start/End: Complemental strand, 47253794 - 47253751
Alignment:
Q  496 acttcaccaaaaaagtcattctaacaacttcaccatagaatttt 539  Q
    |||||||||||||||||||||| |  ||||||||||||||||||    
T  47253794 acttcaccaaaaaagtcattctcatgacttcaccatagaatttt 47253751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 351 - 401
Target Start/End: Original strand, 2266718 - 2266768
Alignment:
Q  351 atgtttaattttgatttaatcaaggacacatttgcaataagtaaaaatata 401  Q
    ||||||||||||||||||||||| | || | |||||||||||||| |||||    
T  2266718 atgtttaattttgatttaatcaaagtcatagttgcaataagtaaagatata 2266768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 496 - 542
Target Start/End: Complemental strand, 17272056 - 17272010
Alignment:
Q  496 acttcaccaaaaaagtcattctaacaacttcaccatagaattttcct 542  Q
    ||||||||| |||||||||||  || |||||||||||||||||||||    
T  17272056 acttcaccagaaaagtcattcccacgacttcaccatagaattttcct 17272010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 496 - 542
Target Start/End: Original strand, 29584364 - 29584410
Alignment:
Q  496 acttcaccaaaaaagtcattctaacaacttcaccatagaattttcct 542  Q
    ||||||||| |||||||||||  || |||||||||||||||||||||    
T  29584364 acttcaccagaaaagtcattcccacgacttcaccatagaattttcct 29584410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 496 - 542
Target Start/End: Original strand, 38812263 - 38812309
Alignment:
Q  496 acttcaccaaaaaagtcattctaacaacttcaccatagaattttcct 542  Q
    ||||||||| |||||||||||| |  |||||||||||||||||||||    
T  38812263 acttcaccagaaaagtcattctcatgacttcaccatagaattttcct 38812309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 496 - 542
Target Start/End: Original strand, 55478061 - 55478107
Alignment:
Q  496 acttcaccaaaaaagtcattctaacaacttcaccatagaattttcct 542  Q
    |||||||||||||| ||||||| |  |||||||||||||||||||||    
T  55478061 acttcaccaaaaaaatcattctcatgacttcaccatagaattttcct 55478107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 496 - 540
Target Start/End: Complemental strand, 4598038 - 4597994
Alignment:
Q  496 acttcaccaaaaaagtcattctaacaacttcaccatagaattttc 540  Q
    ||||||||| ||||||||||||||  ||||||||||| |||||||    
T  4598038 acttcaccagaaaagtcattctaatgacttcaccataaaattttc 4597994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 494 - 542
Target Start/End: Complemental strand, 38011901 - 38011853
Alignment:
Q  494 tgacttcaccaaaaaagtcattctaacaacttcaccatagaattttcct 542  Q
    ||||||||||| |||||||||||| |  | |||||||||||||||||||    
T  38011901 tgacttcaccagaaaagtcattctcatgatttcaccatagaattttcct 38011853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 140; Significance: 5e-73; HSPs: 28)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 140; E-Value: 5e-73
Query Start/End: Original strand, 348 - 547
Target Start/End: Complemental strand, 7553543 - 7553344
Alignment:
Q  348 aaaatgtttaattttgatttaatcaaggacacatttgcaataagtaaaaatatagtggtacacaatatgaacaaatgtacaatacacactataatttgat 447  Q
    |||||||||||||||||||||||||| |||||| ||||||||||||||||||||||| ||||| ||||||| ||| ||||||| |||| |||||||| ||    
T  7553543 aaaatgtttaattttgatttaatcaatgacacaattgcaataagtaaaaatatagtgatacaccatatgaataaaagtacaatgcacaatataatttaat 7553444  T
Q  448 gtgacattcattaaatacacaaatgcattatgattggtcattctaatgacttcaccaaaaaagtcattctaacaacttcaccatagaattttcctaaaat 547  Q
    ||| ||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||| || |||||    
T  7553443 gtggcattcattaaatacacaaatgtattatgattggtcattctaatgactttaccaaaaaagtcattttaacaacttcaccatagaatttcccaaaaat 7553344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 135; E-Value: 5e-70
Query Start/End: Original strand, 274 - 534
Target Start/End: Complemental strand, 6348990 - 6348721
Alignment:
Q  274 aggaatttgtgcgatggggaagatggaatgaattggttgtatccaatttagatgcataagttttaagaataa----------caaaaatgtttaattttg 363  Q
    ||||||||||||||||||||||| | ||||||||||| |||||||||||||||  |||||||||||||||||          ||||| |||| |||||||    
T  6348990 aggaatttgtgcgatggggaagacg-aatgaattggt-gtatccaatttagatt-ataagttttaagaataaaaaataataacaaaattgttgaattttg 6348894  T
Q  364 atttaatcaaggacacatttgcaataagtaaaaatatagtggtacacaatatgaacaaatgtacaatacacac--tataatttgatgtgacattcattaa 461  Q
    ||||||| |||||| || ||||||||||||||| |||| |||||||| |||||||||||||||||||| |||   || ||||||||||| ||| ||||||    
T  6348893 atttaattaaggacccaattgcaataagtaaaactataatggtacaccatatgaacaaatgtacaatatacatagtaaaatttgatgtgtcatgcattaa 6348794  T
Q  462 atacacaaatgcattatgattggtcattctaatgacttcaccaaaaaagtcattctaacaacttcaccataga 534  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||    
T  6348793 atacacaaatgcattatgattggtcattctaatgacttcatcaaaaaagtcattttaacaacttcaccataga 6348721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 118; E-Value: 7e-60
Query Start/End: Original strand, 347 - 520
Target Start/End: Complemental strand, 32652027 - 32651854
Alignment:
Q  347 aaaaatgtttaattttgatttaatcaaggacacatttgcaataagtaaaaatatagtggtacacaatatgaacaaatgtacaatacacactataatttga 446  Q
    |||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||| |||||| |||||||||||| | ||||| |||||||    
T  32652027 aaaaatgtttaattttgatttaatcaaggacacaattgcaacaagtaaaaatatagtggtacaccatatgagcaaatgtacaatgcgcactaaaatttga 32651928  T
Q  447 tgtgacattcattaaatacacaaatgcattatgattggtcattctaatgacttcaccaaaaaagtcattctaac 520  Q
    |||||||| ||||||||||||| ||| |||||||||| |||||||||||||||||||| |||||| ||| ||||    
T  32651927 tgtgacatgcattaaatacacagatgtattatgattgatcattctaatgacttcaccagaaaagttattttaac 32651854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 341 - 504
Target Start/End: Original strand, 40913151 - 40913309
Alignment:
Q  341 aataacaaaaatgtttaattttgatttaatcaaggacacatttgcaataagtaaaaatatagtggtacacaatatgaacaaatgtacaatacacactata 440  Q
    ||||| |||||| ||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||| |||||| |||||||||||| |||| || |    
T  40913151 aataaaaaaaatatttaattttgatttaatcaaggacacaattgcaataaataaaaatatagtggtacaccatatgagcaaatgtacaatgcacagtaaa 40913250  T
Q  441 atttgatgtgacattcattaaatacacaaatgcattatgattggtcattctaatgacttcacca 504  Q
    |||     |||| | ||||||||||||||||| |||||||||||||||| ||| ||||||||||    
T  40913251 att-----tgacgtacattaaatacacaaatgaattatgattggtcattttaacgacttcacca 40913309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 81; E-Value: 8e-38
Query Start/End: Original strand, 358 - 538
Target Start/End: Complemental strand, 58204 - 58025
Alignment:
Q  358 attttgatttaatcaaggacacatttgcaataagtaaaaatatagtggtacacaatatgaacaaatgtacaatacacactataatttgatgtgacattca 457  Q
    ||||| ||||||||| ||||||| ||||||||||||||||||| |||| ||||  ||||||||||||| ||||||||  ||||||||||| ||||||  |    
T  58204 attttaatttaatca-ggacacaattgcaataagtaaaaatattgtggcacaccgtatgaacaaatgtgcaatacaccatataatttgatctgacatgaa 58106  T
Q  458 ttaaatacacaaatgcattatgattggtcattctaatgacttcaccaaaaaagtcattctaacaacttcaccatagaattt 538  Q
    ||||||||| | |||    ||||||||||||||| ||||||||| ||||||||||||||| | || |||||||||||||||    
T  58105 ttaaatacagatatgttaaatgattggtcattctcatgacttcatcaaaaaagtcattctcataatttcaccatagaattt 58025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 351 - 539
Target Start/End: Complemental strand, 41644058 - 41643874
Alignment:
Q  351 atgtttaattttgatttaatcaaggacacatttgcaataagtaaaaatatagtggtacacaatatgaacaaatgtacaatacacactataatttgatgtg 450  Q
    |||||||||||||||||||||| ||| ||| |||||||||||||| ||||| ||  ||||  ||||| ||||||| ||||||||  |||||| ||| |||    
T  41644058 atgtttaattttgatttaatcagggatacaattgcaataagtaaagatataatgacacaccttatgatcaaatgtgcaatacaccatataatctgacgtg 41643959  T
Q  451 acattcattaaatacacaaatgcattatgattggtcattctaatgacttcaccaaaaaagtcattctaacaacttcaccatagaatttt 539  Q
    ||||  |||||||||||||||||   |||||||  ||||    | |||||||||||||||||||| | |  ||||||||||||||||||    
T  41643958 acatgaattaaatacacaaatgctcaatgattgaccatt----taacttcaccaaaaaagtcattatcatgacttcaccatagaatttt 41643874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 347 - 546
Target Start/End: Original strand, 43446316 - 43446515
Alignment:
Q  347 aaaaatgtttaattttgatttaatcaaggacacatttgcaataagtaaaaatatagtggtacacaatatgaacaaatgtacaatacacactataatttga 446  Q
    |||||||||||||||| |||| || ||||||||| ||| |||||||||| ||||||||  | ||  ||||| |||| || ||| ||||  ||||||||||    
T  43446316 aaaaatgtttaattttaattttattaaggacacaattgtaataagtaaagatatagtgacataccctatgagcaaacgtgcaacacaccatataatttga 43446415  T
Q  447 tgtgacattcattaaatacacaaatgcattatgattggtcattctaatgacttcaccaaaaaagtcattctaacaacttcaccatagaattttcctaaaa 546  Q
     |||  || ||||| |||| ||||||    ||||||| ||||||| || |||||||| ||||||||||||| |  |||||||||||||||||||||||||    
T  43446416 cgtggtatgcattagatacgcaaatgttcaatgattgatcattctcataacttcaccgaaaaagtcattctcatgacttcaccatagaattttcctaaaa 43446515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 351 - 542
Target Start/End: Complemental strand, 19073544 - 19073356
Alignment:
Q  351 atgtttaattttgatttaatcaaggacacatttgcaataagtaaaaatatagtggtacacaatatgaacaaatgtacaatacacactataatttgatgtg 450  Q
    |||||||| ||||||||||||| ||||||| || ||||||||||| ||||| ||  ||||  |||  ||||||||  |||||||  |||||| ||| |||    
T  19073544 atgtttaactttgatttaatcagggacacaatttcaataagtaaatatataatgacacaccttatagacaaatgtggaatacaccatataatctgacgtg 19073445  T
Q  451 acattcattaaatacacaaatgcattatgattggtcattctaatgacttcacc-aaaaaagtcattctaacaacttcaccatagaattttcct 542  Q
    ||||  ||||||||||||||| |   |||||||  ||||    | |||||||| |||||| ||||||| | ||||||||||||||||||||||    
T  19073444 acatggattaaatacacaaattctcaatgattgaccatt----taacttcaccaaaaaaaatcattctcataacttcaccatagaattttcct 19073356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 351 - 542
Target Start/End: Original strand, 34441785 - 34441970
Alignment:
Q  351 atgtttaattttgatttaatcaaggacacatttgcaataagtaaaaatatagtggtacacaatatgaacaaatgtacaatacacactataatttgatgtg 450  Q
    |||||||||||||||||||||| ||||||| |||||||||||||| |||||  |  |||   ||||  ||||||| ||||||||  |||||  ||| |||    
T  34441785 atgtttaattttgatttaatcagggacacaattgcaataagtaaagatataacgacacatcttatgggcaaatgtgcaatacaccatataa--tgacgtg 34441882  T
Q  451 acattcattaaatacacaaatgcattatgattggtcattctaatgacttcaccaaaaaagtcattctaacaacttcaccatagaattttcct 542  Q
    ||||  |||||||||||||||     || ||||||||||    | |||| ||||||||||||||| | |  |||||||||||||||||||||    
T  34441883 acatgaattaaatacacaaatattcaataattggtcatt----taactttaccaaaaaagtcattttcatgacttcaccatagaattttcct 34441970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 358 - 542
Target Start/End: Complemental strand, 6177954 - 6177774
Alignment:
Q  358 attttgatttaatcaaggacacatttgcaataagtaaaaatatagtggtacacaatatgaacaaatgtacaatacacactataatttgatgtgacattca 457  Q
    ||||||||||||||| ||||||| ||| |||||||||| ||||| ||  | ||  ||||  ||||||  ||||||||  |||||| ||| |||||||  |    
T  6177954 attttgatttaatcagggacacaattggaataagtaaatatataatgacataccttatgggcaaatgcgcaatacaccatataatctgacgtgacatgaa 6177855  T
Q  458 ttaaatacacaaatgcattatgattggtcattctaatgacttcaccaaaaaagtcattctaacaacttcaccatagaattttcct 542  Q
    ||||||||||||||||   |||||||  ||||    | ||||||||| |||||||||||| |  ||||| || ||||||||||||    
T  6177854 ttaaatacacaaatgctcaatgattgaccatt----taacttcaccagaaaagtcattctcatgacttcgccgtagaattttcct 6177774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 354 - 471
Target Start/End: Original strand, 18059227 - 18059344
Alignment:
Q  354 tttaattttgatttaatcaaggacacatttgcaataagtaaaaatatagtggtacacaatatgaacaaatgtacaatacacactataatttgatgtgaca 453  Q
    ||||||||| || |||||||||||||| |||||||||||||| ||||| |   ||||| |||| | |||| | ||||||||  |||||| |||  |||||    
T  18059227 tttaattttaatctaatcaaggacacaattgcaataagtaaagatataataacacacattatggataaatatgcaatacaccatataatctgacatgaca 18059326  T
Q  454 ttcattaaatacacaaat 471  Q
    |  |||||||||||||||    
T  18059327 tgaattaaatacacaaat 18059344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 496 - 541
Target Start/End: Complemental strand, 31861940 - 31861895
Alignment:
Q  496 acttcaccaaaaaagtcattctaacaacttcaccatagaattttcc 541  Q
    |||||||||||||||||||||| | |||||||||||||||||||||    
T  31861940 acttcaccaaaaaagtcattctcataacttcaccatagaattttcc 31861895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 225 - 308
Target Start/End: Complemental strand, 7553651 - 7553572
Alignment:
Q  225 aattttggagagaataggaggaagaaatctggaattttgat-aagctataaggaatttgtgcgatggggaagatggaatgaattg 308  Q
    ||||||||||||||  ||||||||||||||||||||||||| |||||     |||||||| |||||||||| |||| ||||||||    
T  7553651 aattttggagagaaagggaggaagaaatctggaattttgatgaagct-----gaatttgtccgatggggaaaatggcatgaattg 7553572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 351 - 471
Target Start/End: Complemental strand, 15651034 - 15650914
Alignment:
Q  351 atgtttaattttgatttaatcaaggacacatttgcaataagtaaaaatatagtggtacacaatatgaacaaatgtacaatacacactataatttgatgtg 450  Q
    |||||||||||||||||||||| | ||||| |||||||||||||| ||||| ||  ||||  ||||  |||||||  |||||||  |||||| | | |||    
T  15651034 atgtttaattttgatttaatcaggaacacaattgcaataagtaaagatataatgacacaccttatgggcaaatgtgaaatacaccatataatcttacgtg 15650935  T
Q  451 acattcattaaatacacaaat 471  Q
    | ||  |||||||||||||||    
T  15650934 atatggattaaatacacaaat 15650914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 355 - 401
Target Start/End: Original strand, 38250000 - 38250046
Alignment:
Q  355 ttaattttgatttaatcaaggacacatttgcaataagtaaaaatata 401  Q
    |||||||||||||||||| ||||||| |||||||||||||| |||||    
T  38250000 ttaattttgatttaatcagggacacaattgcaataagtaaagatata 38250046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 496 - 546
Target Start/End: Original strand, 41464008 - 41464058
Alignment:
Q  496 acttcaccaaaaaagtcattctaacaacttcaccatagaattttcctaaaa 546  Q
    ||||||||||||| |||||||| || |||||||||||||||||| ||||||    
T  41464008 acttcaccaaaaatgtcattctcacgacttcaccatagaatttttctaaaa 41464058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 496 - 541
Target Start/End: Complemental strand, 19313897 - 19313852
Alignment:
Q  496 acttcaccaaaaaagtcattctaacaacttcaccatagaattttcc 541  Q
    ||||||||| ||||||||||||||  ||||||||||||||||||||    
T  19313897 acttcaccagaaaagtcattctaatgacttcaccatagaattttcc 19313852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 496 - 541
Target Start/End: Complemental strand, 33902113 - 33902068
Alignment:
Q  496 acttcaccaaaaaagtcattctaacaacttcaccatagaattttcc 541  Q
    ||||||||| ||||||||||||||| |||||| |||||||||||||    
T  33902113 acttcaccagaaaagtcattctaacgacttcatcatagaattttcc 33902068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 100 - 147
Target Start/End: Complemental strand, 7553804 - 7553757
Alignment:
Q  100 gtcttgaattggtatgataagtgaaccctaaaggaagatgaagatgaa 147  Q
    |||| |||| |||||||||||  |||||||||||||||||||||||||    
T  7553804 gtctggaatcggtatgataagcaaaccctaaaggaagatgaagatgaa 7553757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 496 - 543
Target Start/End: Original strand, 17054254 - 17054301
Alignment:
Q  496 acttcaccaaaaaagtcattctaacaacttcaccatagaattttccta 543  Q
    |||||||||||||||||||||  |  ||||||||||||||||||||||    
T  17054254 acttcaccaaaaaagtcattcgcatgacttcaccatagaattttccta 17054301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 496 - 543
Target Start/End: Original strand, 17071895 - 17071942
Alignment:
Q  496 acttcaccaaaaaagtcattctaacaacttcaccatagaattttccta 543  Q
    |||||||||||||||||||||  |  ||||||||||||||||||||||    
T  17071895 acttcaccaaaaaagtcattcgcatgacttcaccatagaattttccta 17071942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 499 - 544
Target Start/End: Original strand, 7007051 - 7007096
Alignment:
Q  499 tcaccaaaaaagtcattctaacaacttcaccatagaattttcctaa 544  Q
    ||||||||||| ||||||| |  |||||||||||||||||||||||    
T  7007051 tcaccaaaaaaatcattctcatgacttcaccatagaattttcctaa 7007096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 498 - 543
Target Start/End: Original strand, 11366541 - 11366586
Alignment:
Q  498 ttcaccaaaaaagtcattctaacaacttcaccatagaattttccta 543  Q
    |||||||||||||||||||| |  | ||||||||||||||||||||    
T  11366541 ttcaccaaaaaagtcattcttatgatttcaccatagaattttccta 11366586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 351 - 473
Target Start/End: Original strand, 18779261 - 18779385
Alignment:
Q  351 atgtttaattttgatttaatcaaggacacatttgcaataagtaaaaatatagtggtacacaatatga--acaaatgtacaatacacactataatttgatg 448  Q
    |||||||| ||||||||||||| | ||||| |||||||||||||| ||| | |   ||||  ||| |   ||||||| ||||| ||  |||||| |||||    
T  18779261 atgtttaactttgatttaatcaggaacacaattgcaataagtaaagataaaataacacactttattatggcaaatgtgcaataaaccatataatctgatg 18779360  T
Q  449 tgacattcattaaatacacaaatgc 473  Q
    ||||||  |||||||||||||||||    
T  18779361 tgacatgaattaaatacacaaatgc 18779385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 351 - 472
Target Start/End: Original strand, 27138883 - 27139003
Alignment:
Q  351 atgtttaattttgatttaatcaaggacacatttgcaataagtaaaaatatagtggtacacaatatgaacaaatgtacaatacacactataatttgatgtg 450  Q
    |||||||||||||||||||||| ||||||| ||||||   ||||| ||||| ||  ||||  ||||  ||||| | ||||||||  |||||| ||| |||    
T  27138883 atgtttaattttgatttaatcagggacacaattgcaacccgtaaagatataatgacacactttatgggcaaatatgcaatacaccgtataatctgacgtg 27138982  T
Q  451 acattcattaaatacacaaatg 472  Q
    ||||  ||| ||||||||||||    
T  27138983 acatggatt-aatacacaaatg 27139003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 496 - 541
Target Start/End: Complemental strand, 41465554 - 41465509
Alignment:
Q  496 acttcaccaaaaaagtcattctaacaacttcaccatagaattttcc 541  Q
    ||||||||| |||||||||||| |  ||||||||||||||||||||    
T  41465554 acttcaccagaaaagtcattctcatgacttcaccatagaattttcc 41465509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 496 - 540
Target Start/End: Complemental strand, 13711509 - 13711465
Alignment:
Q  496 acttcaccaaaaaagtcattctaacaacttcaccatagaattttc 540  Q
    ||||||||| |||||||||||| |  |||||||||||||||||||    
T  13711509 acttcaccagaaaagtcattctgatgacttcaccatagaattttc 13711465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 498 - 542
Target Start/End: Original strand, 31570894 - 31570938
Alignment:
Q  498 ttcaccaaaaaagtcattctaacaacttcaccatagaattttcct 542  Q
    ||||||| |||||| ||||| | ||||||||||||||||||||||    
T  31570894 ttcaccagaaaagttattctcataacttcaccatagaattttcct 31570938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 136; Significance: 1e-70; HSPs: 35)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 136; E-Value: 1e-70
Query Start/End: Original strand, 347 - 538
Target Start/End: Original strand, 48155071 - 48155262
Alignment:
Q  347 aaaaatgtttaattttgatttaatcaaggacacatttgcaataagtaaaaatatagtggtacacaatatgaacaaatgtacaatacacactataatttga 446  Q
    |||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||| |||||| |||||||||||| | ||||| |||||||    
T  48155071 aaaaatgtttaattttgatttaatcaaggacacaattgcaacaagtaaaaatatagtggtacaccatatgagcaaatgtacaatgcgcactaaaatttga 48155170  T
Q  447 tgtgacattcattaaatacacaaatgcattatgattggtcattctaatgacttcaccaaaaaagtcattctaacaacttcaccatagaattt 538  Q
    |||||||| ||||||||||||| ||| |||||||| ||||||||||||||||||||||||||||||||| |||| |||||||| ||||||||    
T  48155171 tgtgacatgcattaaatacacagatgtattatgatcggtcattctaatgacttcaccaaaaaagtcattttaacgacttcaccgtagaattt 48155262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 120; E-Value: 4e-61
Query Start/End: Original strand, 341 - 540
Target Start/End: Complemental strand, 29896060 - 29895861
Alignment:
Q  341 aataacaaaaatgtttaattttgatttaatcaaggacacatttgcaataagtaaaaatatagtggtacacaatatgaacaaatgtacaatacacactata 440  Q
    ||||| ||||||||||||||||||||||||||||||| || || ||||  || |||||||||||||||||  ||||| |||||||||| |||||  ||||    
T  29896060 aataataaaaatgtttaattttgatttaatcaaggacccaattccaatgggttaaaatatagtggtacaccgtatgagcaaatgtacagtacacggtata 29895961  T
Q  441 atttgatgtgacattcattaaatacacaaatgcattatgattggtcattctaatgacttcaccaaaaaagtcattctaacaacttcaccatagaattttc 540  Q
    |||||||||||||| ||||||||||||| ||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||  ||| |||||||    
T  29895960 atttgatgtgacatgcattaaatacacagatgtattatgattggtcattctaataacttcaccaaaaaagtcattctaacaacttcattataaaattttc 29895861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 341 - 540
Target Start/End: Complemental strand, 54606902 - 54606703
Alignment:
Q  341 aataacaaaaatgtttaattttgatttaatcaaggacacatttgcaataagtaaaaatatagtggtacacaatatgaacaaatgtacaatacacactata 440  Q
    ||||| |||||||||||||||| |||||||||||| |||| |||||||||||||||||||||  | ||||  |||||  |||||| ||||||||  |||     
T  54606902 aataataaaaatgtttaattttaatttaatcaagggcacaattgcaataagtaaaaatatagcagcacaccgtatgagtaaatgtgcaatacaccgtatg 54606803  T
Q  441 atttgatgtgacattcattaaatacacaaatgcattatgattggtcattctaatgacttcaccaaaaaagtcattctaacaacttcaccatagaattttc 540  Q
    ||||||  |||||| |||||||||||||||||    ||||||||||| ||||||||||||| ||||||||||||| ||| || || ||||||||||||||    
T  54606802 atttgacatgacatacattaaatacacaaatgttcaatgattggtcaatctaatgacttcaacaaaaaagtcattttaataattttaccatagaattttc 54606703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 397 - 538
Target Start/End: Complemental strand, 13007043 - 13006902
Alignment:
Q  397 atatagtggtacacaatatgaacaaatgtacaatacacactataatttgatgtgacattcattaaatacacaaatgcattatgattggtcattctaatga 496  Q
    |||||||||||||| |||||| |||||||||||| | || || ||||||||||| ||| ||||||||||||||||| |||||||||||||| |||||| |    
T  13007043 atatagtggtacaccatatgagcaaatgtacaatgcgcaataaaatttgatgtggcatgcattaaatacacaaatgaattatgattggtcaatctaataa 13006944  T
Q  497 cttcaccaaaaaagtcattctaacaacttcaccatagaattt 538  Q
    |||||| |||||||||||| |||| ||||||||||| |||||    
T  13006943 cttcactaaaaaagtcattttaacgacttcaccatataattt 13006902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 420 - 538
Target Start/End: Complemental strand, 5124789 - 5124671
Alignment:
Q  420 aaatgtacaatacacactataatttgatgtgacattcattaaatacacaaatgcattatgattggtcattctaatgacttcaccaaaaaagtcattctaa 519  Q
    |||||| ||||||||  ||||||||||  |||||| |||||||||||||||||    ||||||||||| ||||||||||||||||||||||||||| |||    
T  5124789 aaatgtgcaatacaccgtataatttgacatgacatacattaaatacacaaatgttcaatgattggtcaatctaatgacttcaccaaaaaagtcattttaa 5124690  T
Q  520 caacttcaccatagaattt 538  Q
      | |||||||||||||||    
T  5124689 tgatttcaccatagaattt 5124671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 354 - 542
Target Start/End: Original strand, 40640496 - 40640683
Alignment:
Q  354 tttaattttgatttaatcaaggacacattt---gcaataagtaaaaatatagtggtacacaatatgaacaaatgtacaatacacactataatttgatgtg 450  Q
    ||||||||||||||||||||||||||| ||   |||||||||||||||||| ||  |||   ||||  ||||||| ||||||||  |||||| ||| |||    
T  40640496 tttaattttgatttaatcaaggacacaattgcagcaataagtaaaaatataatgacacatcttatgggcaaatgtgcaatacaccatataatatgacgtg 40640595  T
Q  451 acattcattaaatacacaaatgcattatgattggtcattctaatgacttcaccaaaaaagtcattctaacaacttcaccatagaattttcct 542  Q
    ||||  |||||||||||||||||   |||||||  ||||    | ||||||||| |||||||||||| |  |||||||||||||||||||||    
T  40640596 acatggattaaatacacaaatgctcaatgattgaccatt----taacttcaccagaaaagtcattctcatgacttcaccatagaattttcct 40640683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 351 - 541
Target Start/End: Original strand, 49359490 - 49359676
Alignment:
Q  351 atgtttaattttgatttaatcaaggacacatttgcaataagtaaaaatatagtggtacacaatatgaacaaatgtacaatacacactataatttgatgtg 450  Q
    |||||||||||||||||||||| ||||||| ||||| |||||||| ||||| ||  ||||  ||||| ||||||| |||||||   |||||| ||| |||    
T  49359490 atgtttaattttgatttaatcagggacacaattgcattaagtaaagatataatgacacaccttatgagcaaatgtgcaatacatcatataatatgacgtg 49359589  T
Q  451 acattcattaaatacacaaatgcattatgattggtcattctaatgacttcaccaaaaaagtcattctaacaacttcaccatagaattttcc 541  Q
     |||  ||||||||||||||||    |||||||| ||||    | ||||||| |||||||||||| | |  ||||||||||||||||||||    
T  49359590 tcatggattaaatacacaaatgttcaatgattggccatt----taacttcacaaaaaaagtcattttcatgacttcaccatagaattttcc 49359676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 351 - 540
Target Start/End: Original strand, 19606776 - 19606961
Alignment:
Q  351 atgtttaattttgatttaatcaaggacacatttgcaataagtaaaaatatagtggtacacaatatgaacaaatgtacaatacacactataatttgatgtg 450  Q
    |||||||||||||||||||| | ||||||  |||||| ||||||| ||||| ||  ||||  |||| | |||||| ||||||||  |||||| ||| |||    
T  19606776 atgtttaattttgatttaataagggacacgattgcaacaagtaaagatataatgacacaccttatggaaaaatgttcaatacaccatataatctgacgtg 19606875  T
Q  451 acattcattaaatacacaaatgcattatgattggtcattctaatgacttcaccaaaaaagtcattctaacaacttcaccatagaattttc 540  Q
    || |  |||||||||||||||||   || ||||||||||    | ||||||||| |||||||||| | | ||||||||||||||||||||    
T  19606876 acctgaattaaatacacaaatgctcaatcattggtcatt----taacttcaccagaaaagtcatttttataacttcaccatagaattttc 19606961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 389 - 497
Target Start/End: Complemental strand, 11018508 - 11018400
Alignment:
Q  389 aagtaaaaatatagtggtacacaatatgaacaaatgtacaatacacactataatttgatgtgacattcattaaatacacaaatgcattatgattggtcat 488  Q
    ||||||||||||||||| ||||  ||||| |||||||||| |||||| ||||||| || |||| ||  |||||||||| ||||| |  ||||||||||||    
T  11018508 aagtaaaaatatagtggcacaccgtatgagcaaatgtacagtacacaatataattggacgtgatatgtattaaatacataaatgtaaaatgattggtcat 11018409  T
Q  489 tctaatgac 497  Q
    |||||||||    
T  11018408 tctaatgac 11018400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 341 - 541
Target Start/End: Complemental strand, 42204540 - 42204342
Alignment:
Q  341 aataacaaaaatgtttaattttgatttaatcaaggacacatttgcaataagtaaaaatatagtggtacacaatatgaacaaatgtacaatacacactata 440  Q
    ||||| ||||||||||||||||||||||||| ||||| || |||||||||||||| ||||| ||  ||||  |||||  |||| | ||||||||  ||||    
T  42204540 aataataaaaatgtttaattttgatttaatc-aggactcaattgcaataagtaaagatata-tgacacaccttatgagtaaatatgcaatacaccatata 42204443  T
Q  441 atttgatgtgacattcattaaatacacaaatgcattatgattggtcattctaatgacttcaccaaaaaagtcattctaacaacttcaccatagaattttc 540  Q
    ||  ||||||||||  |||||||||||||||||   || || ||||||     | |||||| || |||||||||||| || ||||||| |||||||||||    
T  42204442 atccgatgtgacatagattaaatacacaaatgctcaataataggtcatatggttaacttcatcagaaaagtcattctcacgacttcacgatagaattttc 42204343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 225 - 322
Target Start/End: Complemental strand, 29896221 - 29896124
Alignment:
Q  225 aattttggagagaataggaggaagaaatctggaattttgat-aagctataaggaatttgtgcgatggggaagatggaatgaattggttgtatccaattt 322  Q
    |||||| |||||||  ||||||||||||||||||||||||| ||||||| | ||||||||||||| | ||||| |||| |||||||| |||||||||||    
T  29896221 aattttagagagaaagggaggaagaaatctggaattttgatgaagctatgaagaatttgtgcgat-gtgaagagggaaagaattggtcgtatccaattt 29896124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 351 - 538
Target Start/End: Original strand, 38392490 - 38392673
Alignment:
Q  351 atgtttaattttgatttaatcaaggacacatttgcaataagtaaaaatatagtggtacacaatatgaacaaatgtacaatacacactataatttgatgtg 450  Q
    |||||||||||||||||||||| ||||||| |||||||||||||| ||||| ||  ||||| ||||  ||||||| |||||||   |||||| ||   ||    
T  38392490 atgtttaattttgatttaatcagggacacaattgcaataagtaaatatataatgacacacattatgggcaaatgtgcaatacatcatataatctgtcatg 38392589  T
Q  451 acattcattaaatacacaaatgcattatgattggtcattctaatgacttcaccaaaaaagtcattctaacaacttcaccatagaattt 538  Q
    ||||  ||||||||||||||||    |||| ||  ||||    | |||||||||||||||||||||| |  ||||||||||| |||||    
T  38392590 acatggattaaatacacaaatgttcaatgactgaccatt----taacttcaccaaaaaagtcattctcatgacttcaccatataattt 38392673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 496 - 546
Target Start/End: Original strand, 7327623 - 7327673
Alignment:
Q  496 acttcaccaaaaaagtcattctaacaacttcaccatagaattttcctaaaa 546  Q
    ||||||| |||||||||||||| | ||||||||||||||||||||||||||    
T  7327623 acttcactaaaaaagtcattctcataacttcaccatagaattttcctaaaa 7327673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 351 - 473
Target Start/End: Original strand, 7568581 - 7568703
Alignment:
Q  351 atgtttaattttgatttaatcaaggacacatttgcaataagtaaaaatatagtggtacacaatatgaacaaatgtacaatacacactataatttgatgtg 450  Q
    ||||||||||||||||||||||  |||||| ||| |||||||||| ||||| ||  ||||  ||||  ||||||| ||||||    |||||| ||| |||    
T  7568581 atgtttaattttgatttaatcagagacacaattgtaataagtaaagatataatgacacactttatgtgcaaatgtgcaatactgcatataatctgacgtg 7568680  T
Q  451 acattcattaaatacacaaatgc 473  Q
    ||||  |||||||||||||||||    
T  7568681 acatgaattaaatacacaaatgc 7568703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 351 - 401
Target Start/End: Original strand, 32180613 - 32180663
Alignment:
Q  351 atgtttaattttgatttaatcaaggacacatttgcaataagtaaaaatata 401  Q
    |||||||||||||||||||||| ||||||| |||||||||||||| |||||    
T  32180613 atgtttaattttgatttaatcagggacacaattgcaataagtaaagatata 32180663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 397 - 542
Target Start/End: Original strand, 42665445 - 42665590
Alignment:
Q  397 atatagtggtacacaatatgaacaaatgtacaatacacactataatttgatgtgacattcattaaatacacaaatgcattatgattggtcattctaatga 496  Q
    ||||||||| |||  |||||| ||||||| | |||||| | ||||||||| ||| ||| ||||||||| ||||||     ||||||||| |   || | |    
T  42665445 atatagtggcacatcatatgagcaaatgtgctatacaccccataatttgacgtgtcatgcattaaatatacaaatcttcaatgattggttaaaatattaa 42665544  T
Q  497 cttcaccaaaaaagtcattctaacaacttcaccatagaattttcct 542  Q
    ||||||||||||| ||||| | | ||||||||||||||||||||||    
T  42665545 cttcaccaaaaaaatcattatcataacttcaccatagaattttcct 42665590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 351 - 472
Target Start/End: Complemental strand, 44880976 - 44880856
Alignment:
Q  351 atgtttaattttgatttaatcaaggacacatttgcaataagtaaaaatatagtggtacacaatatgaacaaatgtacaatacacactataatttgatgtg 450  Q
    |||||||||||||||||||||| ||||||| ||| |||||||||| ||||| ||  || |  ||||| ||||||| ||||||||  ||| || ||| |||    
T  44880976 atgtttaattttgatttaatcagggacacaattgtaataagtaaagatataatgacac-ccttatgagcaaatgtgcaatacaccatattatctgacgtg 44880878  T
Q  451 acattcattaaatacacaaatg 472  Q
    ||||  |||||||||| |||||    
T  44880877 acatggattaaatacataaatg 44880856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 351 - 395
Target Start/End: Complemental strand, 26000718 - 26000674
Alignment:
Q  351 atgtttaattttgatttaatcaaggacacatttgcaataagtaaa 395  Q
    ||||||||||||||||||||||| |||||| ||||||||||||||    
T  26000718 atgtttaattttgatttaatcaatgacacaattgcaataagtaaa 26000674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 341 - 401
Target Start/End: Complemental strand, 43485507 - 43485447
Alignment:
Q  341 aataacaaaaatgtttaattttgatttaatcaaggacacatttgcaataagtaaaaatata 401  Q
    ||||| |||||||||||||||| ||||||||| |||| || || |||||||||||||||||    
T  43485507 aataataaaaatgtttaattttaatttaatcagggactcaattacaataagtaaaaatata 43485447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 341 - 401
Target Start/End: Complemental strand, 47870387 - 47870327
Alignment:
Q  341 aataacaaaaatgtttaattttgatttaatcaaggacacatttgcaataagtaaaaatata 401  Q
    ||||| |||||||||| |||||||||||||||||||| || |||||||| ||||| |||||    
T  47870387 aataaaaaaaatgtttgattttgatttaatcaaggactcaattgcaatacgtaaagatata 47870327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 351 - 434
Target Start/End: Original strand, 7758285 - 7758368
Alignment:
Q  351 atgtttaattttgatttaatcaaggacacatttgcaataagtaaaaatatagtggtacacaatatgaacaaatgtacaatacac 434  Q
    |||||||||||||||||||| | ||||||| |||||||||||||| ||||| ||   |||  ||||  ||||||||||||||||    
T  7758285 atgtttaattttgatttaattagggacacaattgcaataagtaaagatataatgacgcaccttatgggcaaatgtacaatacac 7758368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 417 - 545
Target Start/End: Original strand, 45879426 - 45879550
Alignment:
Q  417 aacaaatgtacaatacacactataatttgatgtgacattcattaaatacacaaatgcattatgattggtcattctaatgacttcaccaaaaaagtcattc 516  Q
    ||||||||| ||||||||  |||||| ||| ||| |||  |||||||||||||||||   |||||||| ||||    | |||| |||| |||||||||||    
T  45879426 aacaaatgtgcaatacaccatataatctgacgtggcatggattaaatacacaaatgctcaatgattggccatt----taactttaccagaaaagtcattc 45879521  T
Q  517 taacaacttcaccatagaattttcctaaa 545  Q
    | |  |||||| |||||||||||||||||    
T  45879522 tcatgacttcagcatagaattttcctaaa 45879550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 496 - 541
Target Start/End: Complemental strand, 45174539 - 45174494
Alignment:
Q  496 acttcaccaaaaaagtcattctaacaacttcaccatagaattttcc 541  Q
    |||||||||||||||| ||||| |||||||||||||| ||||||||    
T  45174539 acttcaccaaaaaagttattctcacaacttcaccataaaattttcc 45174494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 496 - 541
Target Start/End: Original strand, 51213121 - 51213166
Alignment:
Q  496 acttcaccaaaaaagtcattctaacaacttcaccatagaattttcc 541  Q
    |||||||||||||||||||||| |  ||||||||||||||||||||    
T  51213121 acttcaccaaaaaagtcattctcatgacttcaccatagaattttcc 51213166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 313 - 345
Target Start/End: Complemental strand, 29896102 - 29896070
Alignment:
Q  313 tatccaatttagatgcataagttttaagaataa 345  Q
    |||||||||||||||||||||||||||||||||    
T  29896102 tatccaatttagatgcataagttttaagaataa 29896070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 351 - 395
Target Start/End: Original strand, 47930529 - 47930573
Alignment:
Q  351 atgtttaattttgatttaatcaaggacacatttgcaataagtaaa 395  Q
    |||||||||||||||||||| | ||||||| ||||||||||||||    
T  47930529 atgtttaattttgatttaatgagggacacaattgcaataagtaaa 47930573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 496 - 543
Target Start/End: Original strand, 26941400 - 26941447
Alignment:
Q  496 acttcaccaaaaaagtcattctaacaacttcaccatagaattttccta 543  Q
    |||||||||||||| ||||||| |  ||||||||||||||||||||||    
T  26941400 acttcaccaaaaaaatcattcttatgacttcaccatagaattttccta 26941447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 496 - 543
Target Start/End: Original strand, 40552399 - 40552446
Alignment:
Q  496 acttcaccaaaaaagtcattctaacaacttcaccatagaattttccta 543  Q
    ||||| |||||||||||||||| |  ||||||||||||||||||||||    
T  40552399 acttctccaaaaaagtcattctcatgacttcaccatagaattttccta 40552446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 354 - 400
Target Start/End: Complemental strand, 11018600 - 11018554
Alignment:
Q  354 tttaattttgatttaatcaaggacacatttgcaataagtaaaaatat 400  Q
    ||||||||||||||||| | ||| ||| |||||||||||||||||||    
T  11018600 tttaattttgatttaattagggatacaattgcaataagtaaaaatat 11018554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 496 - 542
Target Start/End: Original strand, 46994790 - 46994836
Alignment:
Q  496 acttcaccaaaaaagtcattctaacaacttcaccatagaattttcct 542  Q
    |||||||||||||| ||||||| || |||||||| ||||||||||||    
T  46994790 acttcaccaaaaaaatcattcttacgacttcaccgtagaattttcct 46994836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 490 - 519
Target Start/End: Complemental strand, 11017247 - 11017218
Alignment:
Q  490 ctaatgacttcaccaaaaaagtcattctaa 519  Q
    ||||||||||||||||||||||||||||||    
T  11017247 ctaatgacttcaccaaaaaagtcattctaa 11017218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 341 - 394
Target Start/End: Original strand, 42665360 - 42665412
Alignment:
Q  341 aataacaaaaatgtttaattttgatttaatcaaggacacatttgcaataagtaa 394  Q
    ||||| ||||||||||||||||||||||||| | |||||| |||||| ||||||    
T  42665360 aataataaaaatgtttaattttgatttaatc-atgacacaattgcaacaagtaa 42665412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 312 - 341
Target Start/End: Complemental strand, 54606946 - 54606917
Alignment:
Q  312 gtatccaatttagatgcataagttttaaga 341  Q
    ||||||||||||||||||||||||||||||    
T  54606946 gtatccaatttagatgcataagttttaaga 54606917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 496 - 540
Target Start/End: Original strand, 11835746 - 11835790
Alignment:
Q  496 acttcaccaaaaaagtcattctaacaacttcaccatagaattttc 540  Q
    |||||||||||||| ||||||| |  |||||||||||||||||||    
T  11835746 acttcaccaaaaaaatcattctcatgacttcaccatagaattttc 11835790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 494 - 542
Target Start/End: Complemental strand, 22451006 - 22450958
Alignment:
Q  494 tgacttcaccaaaaaagtcattctaacaacttcaccatagaattttcct 542  Q
    ||||||||||| |||| ||||||| |  |||||||||||||||||||||    
T  22451006 tgacttcaccagaaaaatcattctcatgacttcaccatagaattttcct 22450958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 131; Significance: 1e-67; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 131; E-Value: 1e-67
Query Start/End: Original strand, 348 - 538
Target Start/End: Original strand, 4488441 - 4488631
Alignment:
Q  348 aaaatgtttaattttgatttaatcaaggacacatttgcaataagtaaaaatatagtggtacacaatatgaacaaatgtacaatacacactataatttgat 447  Q
    ||||||||||||||||||||||||||| ||||| |||||| |||||||||||||||||||||| |||||| |||||||||||| | ||||| ||||||||    
T  4488441 aaaatgtttaattttgatttaatcaagaacacaattgcaacaagtaaaaatatagtggtacaccatatgagcaaatgtacaatgcgcactaaaatttgat 4488540  T
Q  448 gtgacattcattaaatacacaaatgcattatgattggtcattctaatgacttcaccaaaaaagtcattctaacaacttcaccatagaattt 538  Q
    ||||||| ||||||||||||| ||| |||||||| ||||||||||||||||||||||||||||||||| |||| |||||||| ||||||||    
T  4488541 gtgacatgcattaaatacacagatgtattatgatcggtcattctaatgacttcaccaaaaaagtcattttaacgacttcaccgtagaattt 4488631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 122; E-Value: 3e-62
Query Start/End: Original strand, 347 - 544
Target Start/End: Complemental strand, 25441152 - 25440955
Alignment:
Q  347 aaaaatgtttaattttgatttaatcaaggacacatttgcaataagtaaaaatatagtggtacacaatatgaacaaatgtacaatacacactataatttga 446  Q
    |||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||| |||| | |||||||||||| | ||||| |||||||    
T  25441152 aaaaatgtttaattttaatttaatcaaggacacaattgcaataagtaaaaatatagtggtacaccatataagcaaatgtacaatgcgcactaaaatttga 25441053  T
Q  447 tgtgacattcattaaatacacaaatgcattatgattggtcattctaatgacttcaccaaaaaagtcattctaacaacttcaccatagaattttcctaa 544  Q
    |||| |||  |||||||||||| ||| ||||| |||||| |||||||||||||||||| |||||||||| |||| ||||||||||||||||| |||||    
T  25441052 tgtggcatgaattaaatacacagatgtattataattggtaattctaatgacttcaccagaaaagtcattttaacgacttcaccatagaatttccctaa 25440955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 354 - 542
Target Start/End: Complemental strand, 19631932 - 19631748
Alignment:
Q  354 tttaattttgatttaatcaaggacacatttgcaataagtaaaaatatagtggtacacaatatgaacaaatgtacaatacacactataatttgatgtgaca 453  Q
    |||||||||||||||||||  |||||  |||||||||||||| ||||| ||  ||||  |||   ||||||| ||||||||  |||||| | | ||||||    
T  19631932 tttaattttgatttaatcagagacacgattgcaataagtaaagatataatgaaacaccttataggcaaatgtgcaatacaccatataatctaacgtgaca 19631833  T
Q  454 ttcattaaatacacaaatgcattatgattggtcattctaatgacttcaccaaaaaagtcattctaacaacttcaccatagaattttcct 542  Q
    |  ||||||||||||||||    |||||||||||||    | ||||||||| |||||||||||| |  |||||||||||||||||||||    
T  19631832 tggattaaatacacaaatgttcaatgattggtcatt----taacttcaccagaaaagtcattcttatgacttcaccatagaattttcct 19631748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 351 - 454
Target Start/End: Complemental strand, 34994017 - 34993914
Alignment:
Q  351 atgtttaattttgatttaatcaaggacacatttgcaataagtaaaaatatagtggtacacaatatgaacaaatgtacaatacacactataatttgatgtg 450  Q
    |||||||||||||||||||||||||||||| ||| |||||||||| ||||| |   | ||| |||| |||||||| ||||||||  |||||| |||||||    
T  34994017 atgtttaattttgatttaatcaaggacacaattgtaataagtaaagatataataacatacattatggacaaatgtgcaatacaccatataatctgatgtg 34993918  T
Q  451 acat 454  Q
    ||||    
T  34993917 acat 34993914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 351 - 401
Target Start/End: Original strand, 26301787 - 26301837
Alignment:
Q  351 atgtttaattttgatttaatcaaggacacatttgcaataagtaaaaatata 401  Q
    |||||||||||||||||||||| ||||||| |||||||||||||| |||||    
T  26301787 atgtttaattttgatttaatcagggacacaattgcaataagtaaagatata 26301837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 351 - 542
Target Start/End: Original strand, 11084016 - 11084201
Alignment:
Q  351 atgtttaattttgatttaatcaaggacacatttgcaataagtaaaaatatagtggtacacaatatgaacaaatgtacaatacacactataatttgatgtg 450  Q
    ||||||||||||||||||||||  |||||| |||||||||||||| ||||| ||  ||||  ||||  |||||||  |||||||  |||||  ||| |||    
T  11084016 atgtttaattttgatttaatcagagacacaattgcaataagtaaagatataatgacacaccttatgggcaaatgtgtaatacaccatataa--tgacgtg 11084113  T
Q  451 acattcattaaatacacaaatgcattatgattggtcattctaatgacttcaccaaaaaagtcattctaacaacttcaccatagaattttcct 542  Q
    ||||  |||||||||| ||||     |||||||||||||    | |||| |||| |||||| ||| | |  |||||||||||||||||||||    
T  11084114 acatggattaaatacataaatattcaatgattggtcatt----taactttaccagaaaagttattttcatgacttcaccatagaattttcct 11084201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 496 - 542
Target Start/End: Original strand, 4318962 - 4319008
Alignment:
Q  496 acttcaccaaaaaagtcattctaacaacttcaccatagaattttcct 542  Q
    |||||||||||||||||||||| |  |||||||||||||||||||||    
T  4318962 acttcaccaaaaaagtcattctcatgacttcaccatagaattttcct 4319008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 494 - 541
Target Start/End: Original strand, 7235171 - 7235218
Alignment:
Q  494 tgacttcaccaaaaaagtcattctaacaacttcaccatagaattttcc 541  Q
    ||||||||||  |||||||||||| | |||||||||||||||||||||    
T  7235171 tgacttcaccggaaaagtcattctcataacttcaccatagaattttcc 7235218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 496 - 539
Target Start/End: Complemental strand, 30338521 - 30338478
Alignment:
Q  496 acttcaccaaaaaagtcattctaacaacttcaccatagaatttt 539  Q
    ||||||| |||||||||||||| ||||||||| |||||||||||    
T  30338521 acttcactaaaaaagtcattctcacaacttcatcatagaatttt 30338478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 496 - 542
Target Start/End: Complemental strand, 5627436 - 5627390
Alignment:
Q  496 acttcaccaaaaaagtcattctaacaacttcaccatagaattttcct 542  Q
    |||||||||||||||||||||| |  |||||||| ||||||||||||    
T  5627436 acttcaccaaaaaagtcattcttatgacttcaccttagaattttcct 5627390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 496 - 542
Target Start/End: Complemental strand, 8513278 - 8513232
Alignment:
Q  496 acttcaccaaaaaagtcattctaacaacttcaccatagaattttcct 542  Q
    ||||||||| |||||||||||| |  |||||||||||||||||||||    
T  8513278 acttcaccagaaaagtcattctcatgacttcaccatagaattttcct 8513232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 494 - 540
Target Start/End: Complemental strand, 20768133 - 20768087
Alignment:
Q  494 tgacttcaccaaaaaagtcattctaacaacttcaccatagaattttc 540  Q
    ||||||||||| |||||||||||| |  |||||||||||||||||||    
T  20768133 tgacttcaccagaaaagtcattctcatgacttcaccatagaattttc 20768087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 354 - 434
Target Start/End: Complemental strand, 30341207 - 30341127
Alignment:
Q  354 tttaattttgatttaatcaaggacacatttgcaataagtaaaaatatagtggtacacaatatgaacaaatgtacaatacac 434  Q
    ||||||||||||||||||| | ||||| ||||||||||| || ||||| ||  |||   ||||  ||||||||||||||||    
T  30341207 tttaattttgatttaatcatgaacacaattgcaataagtgaagatataatgacacaacttatgggcaaatgtacaatacac 30341127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 128; Significance: 7e-66; HSPs: 29)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 128; E-Value: 7e-66
Query Start/End: Original strand, 351 - 538
Target Start/End: Original strand, 8777275 - 8777462
Alignment:
Q  351 atgtttaattttgatttaatcaaggacacatttgcaataagtaaaaatatagtggtacacaatatgaacaaatgtacaatacacactataatttgatgtg 450  Q
    |||||||||||||||||||  ||||||||| ||||||||||||||||||||||||||||| |||||| |||||||||||| ||||||| |||||||||||    
T  8777275 atgtttaattttgatttaacgaaggacacaattgcaataagtaaaaatatagtggtacaccatatgagcaaatgtacaatgcacactaaaatttgatgtg 8777374  T
Q  451 acattcattaaatacacaaatgcattatgattggtcattctaatgacttcaccaaaaaagtcattctaacaacttcaccatagaattt 538  Q
     ||| ||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||| || | |||||||| ||||||||    
T  8777375 gcatgcattaaatacacaaatgtattatgattggtcattctaatgactttaccaaaaaagtcattttagcgacttcaccgtagaattt 8777462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 125; E-Value: 4e-64
Query Start/End: Original strand, 358 - 542
Target Start/End: Complemental strand, 25513954 - 25513770
Alignment:
Q  358 attttgatttaatcaaggacacatttgcaataagtaaaaatatagtggtacacaatatgaacaaatgtacaatacacactataatttgatgtgacattca 457  Q
    ||||||||||||||||||| ||| ||||||||||||||||||||||||||||| |||||| |||||||||||| | || || ||||||||||||| |  |    
T  25513954 attttgatttaatcaaggagacaattgcaataagtaaaaatatagtggtacaccatatgagcaaatgtacaatgcgcagtaaaatttgatgtgacttgta 25513855  T
Q  458 ttaaatacacaaatgcattatgattggtcattctaatgacttcaccaaaaaagtcattctaacaacttcaccatagaattttcct 542  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||| |||| |||||||||||||||||||||    
T  25513854 ttaaatacacaaatgcattatgattggtcattctaatgacttcaccagaaaaatcattttaacgacttcaccatagaattttcct 25513770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 119; E-Value: 2e-60
Query Start/End: Original strand, 344 - 538
Target Start/End: Complemental strand, 13887434 - 13887240
Alignment:
Q  344 aacaaaaatgtttaattttgatttaatcaaggacacatttgcaataagtaaaaatatagtggtacacaatatgaacaaatgtacaatacacactataatt 443  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||| |||||| |||||||||||| | || || ||||    
T  13887434 aacaaaaatgtttaattttgatttaatcaaggacacaattgcaataagtaaaaatataatggtacaccatatgagcaaatgtacaatgcgcagtaaaatt 13887335  T
Q  444 tgatgtgacattcattaaatacacaaatgcattatgattggtcattctaatgacttcaccaaaaaagtcattctaacaacttcaccatagaattt 538  Q
    ||||||||||| ||||||||||||||||  |||||||||||||| | |||| ||||||||| |||| ||||| |||| ||||||||||| |||||    
T  13887334 tgatgtgacatgcattaaatacacaaataaattatgattggtcaatttaatcacttcaccagaaaaatcattttaacgacttcaccataaaattt 13887240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 353 - 541
Target Start/End: Complemental strand, 26411481 - 26411293
Alignment:
Q  353 gtttaattttgatttaatcaaggacacatttgcaataagtaaaaatatagtggtacacaatatgaacaaatgtacaatacacactataatttgatgtgac 452  Q
    |||||||||||||||||| | ||| ||| |||||||||||||| ||||||||| | ||  ||||| ||||||||||||||||  |||||||||| |||||    
T  26411481 gtttaattttgatttaattagggatacaattgcaataagtaaatatatagtggcatactgtatgagcaaatgtacaatacaccatataatttgacgtgac 26411382  T
Q  453 attcattaaatacacaaatgcattatgattggtcattctaatgacttcaccaaaaaagtcattctaacaacttcaccatagaattttcc 541  Q
    ||  |||||||||| ||||     ||||||||||||||||||||||||||||||||| |||||||||  ||||||||||||||||||||    
T  26411381 atgtattaaatacataaatattcaatgattggtcattctaatgacttcaccaaaaaaatcattctaatgacttcaccatagaattttcc 26411293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 351 - 542
Target Start/End: Complemental strand, 22616679 - 22616493
Alignment:
Q  351 atgtttaattttgatttaatcaaggacacatttgcaataagtaaaaatatagtggtacacaatatgaacaaatgtacaatacacactataatttgatgtg 450  Q
    |||||||||||||||||||||| ||||||| |||||||||||||| ||||| ||  ||||  ||||  ||||||| ||||||||  |||||| ||| |||    
T  22616679 atgtttaattttgatttaatcagggacacaattgcaataagtaaagatataatgacacaccttatgggcaaatgtccaatacaccatataatatgacgtg 22616580  T
Q  451 acattcattaaatacacaaatgcattatgattggtcattctaatgacttcaccaaaaaagtcattctaacaacttcaccatagaattttcct 542  Q
    ||||  ||||||||||  |||||   |||||||| ||||    | ||||||||| |||||||||| | |  |||||||||||||||||||||    
T  22616579 acatggattaaataca-taatgctcaatgattggccatt----taacttcaccagaaaagtcattttcatgacttcaccatagaattttcct 22616493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 351 - 483
Target Start/End: Complemental strand, 31878569 - 31878437
Alignment:
Q  351 atgtttaattttgatttaatcaaggacacatttgcaataagtaaaaatatagtggtacacaatatgaacaaatgtacaatacacactataatttgatgtg 450  Q
    |||||||||||||||||||||| ||||||| |||  ||||||||| ||||| ||  ||||  |||  |||||||| ||||||||  |||||| ||| |||    
T  31878569 atgtttaattttgatttaatcagggacacaattgtcataagtaaagatataatgacacaccttatagacaaatgtgcaatacaccatataatctgacgtg 31878470  T
Q  451 acattcattaaatacacaaatgcattatgattg 483  Q
    ||||  ||||||||||||||||| | |||||||    
T  31878469 acatgaattaaatacacaaatgcttaatgattg 31878437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 341 - 471
Target Start/End: Complemental strand, 25653780 - 25653650
Alignment:
Q  341 aataacaaaaatgtttaattttgatttaatcaaggacacatttgcaataagtaaaaatatagtggtacacaatatgaacaaatgtacaatacacactata 440  Q
    ||||| |||||||||||||||||||||||||| ||| | | |||||||||||||| ||||| ||  ||||  ||||| ||||||| ||||||||  || |    
T  25653780 aataataaaaatgtttaattttgatttaatcagggaaatagttgcaataagtaaagatataatgacacaccttatgagcaaatgtgcaatacaccataca 25653681  T
Q  441 atttgatgtgacattcattaaatacacaaat 471  Q
    || ||| |||| ||  |||||||||||||||    
T  25653680 atctgacgtgatatgaattaaatacacaaat 25653650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 351 - 545
Target Start/End: Complemental strand, 21320937 - 21320747
Alignment:
Q  351 atgtttaattttgatttaatcaaggacacatttgcaataagtaaaaatatagtggtacacaatatgaacaaatgtacaatacacactataatttgatgtg 450  Q
    ||||||||||||||||||||||  |||||| ||| |||||||||| ||||| || ||||   |||   ||||| | ||||||||  |||||| |||||||    
T  21320937 atgtttaattttgatttaatcagagacacaattgtaataagtaaagatataatgatacatcttatatgcaaatatgcaatacaccatataatctgatgtg 21320838  T
Q  451 acattcattaaatacacaaatgcattatgattggtcattctaatgacttcaccaaaaaagtcattctaacaacttcaccatagaattttcctaaa 545  Q
     ||||  |||||||||| |||||   ||||||| |||||    | |||||| ||||||||||||| | |  ||||||||||||||||||| ||||    
T  21320837 gcattagttaaatacacgaatgctcaatgattgatcatt----taacttcatcaaaaaagtcatttttattacttcaccatagaattttcttaaa 21320747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 341 - 469
Target Start/End: Complemental strand, 10053419 - 10053291
Alignment:
Q  341 aataacaaaaatgtttaattttgatttaatcaaggacacatttgcaataagtaaaaatatagtggtacacaatatgaacaaatgtacaatacacactata 440  Q
    ||||| |||||| ||||||||||||||||||| |||| || |||||||||||||| ||||| ||  ||||  ||||| ||||||| ||||||||  ||||    
T  10053419 aataataaaaatatttaattttgatttaatcagggactcaattgcaataagtaaagatataatgacacaccttatgagcaaatgtgcaatacacgatata 10053320  T
Q  441 atttgatgtgacattcattaaatacacaa 469  Q
    ||  || || ||||  |||||||||||||    
T  10053319 atccgacgtaacatggattaaatacacaa 10053291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 351 - 472
Target Start/End: Complemental strand, 33163701 - 33163578
Alignment:
Q  351 atgtttaattttgatttaatcaaggacacatttgcaataagtaaaaatatagtggtacacaatatgaacaaatgtacaatacac--actataatttgatg 448  Q
    |||||||||||||||||||||| ||||||| |||||||||||||| ||||| ||| ||||  |||| | |||||| ||||||||    |||||| |||||    
T  33163701 atgtttaattttgatttaatcagggacacaattgcaataagtaaagatataatggcacaccttatggataaatgtgcaatacaccatatataatctgatg 33163602  T
Q  449 tgacattcattaaatacacaaatg 472  Q
    || |||  |||||| |||||||||    
T  33163601 tggcatagattaaacacacaaatg 33163578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 341 - 472
Target Start/End: Original strand, 33752900 - 33753031
Alignment:
Q  341 aataacaaaaatgtttaattttgatttaatcaaggacacatttgcaataagtaaaaatatagtggtacacaatatgaacaaatgtacaatacacactata 440  Q
    ||||| |||||||||||| ||| ||||||||| ||||||| | |||||||||||| ||| | |   ||||  | || |||||||| ||||| || |||||    
T  33752900 aataaaaaaaatgtttaaattttatttaatcagggacacaatggcaataagtaaagatacaataacacaccttgtggacaaatgtgcaataaaccctata 33752999  T
Q  441 atttgatgtgacattcattaaatacacaaatg 472  Q
    || ||| |||||||| ||||||||||||||||    
T  33753000 atctgaagtgacattgattaaatacacaaatg 33753031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 351 - 543
Target Start/End: Original strand, 36055736 - 36055924
Alignment:
Q  351 atgtttaattttgatttaatcaaggacacatttgcaataagtaaaaatatagtggtacacaatatgaacaaatgtacaatacacactataatttgatgtg 450  Q
    |||||||||||||||||||||  ||||||| ||| |||||||||| ||||| ||  ||||  ||||| ||||||| ||||||||  | |||| ||||| |    
T  36055736 atgtttaattttgatttaatcggggacacaattgtaataagtaaagatataatgacacaccttatgagcaaatgtgcaatacaccatgtaatctgatgcg 36055835  T
Q  451 acattcattaaatacacaaatgcattatgattggtcattctaatgacttcaccaaaaaagtcattctaacaacttcaccatagaattttccta 543  Q
    ||||  ||||||| |||||||||   |||||||  ||||    | ||||||| | |||||||||||| |  || |||||||| ||||||||||    
T  36055836 acatgaattaaattcacaaatgctcaatgattgaccatt----taacttcacaagaaaagtcattctcatgacatcaccataaaattttccta 36055924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 347 - 391
Target Start/End: Original strand, 25521701 - 25521745
Alignment:
Q  347 aaaaatgtttaattttgatttaatcaaggacacatttgcaataag 391  Q
    |||||||||||||||||||||||||||||||||| ||||||||||    
T  25521701 aaaaatgtttaattttgatttaatcaaggacacaattgcaataag 25521745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 341 - 473
Target Start/End: Original strand, 33848539 - 33848671
Alignment:
Q  341 aataacaaaaatgtttaattttgatttaatcaaggacacatttgcaataagtaaaaatatagtggtacacaatatgaacaaatgtacaatacacactata 440  Q
    ||||| ||||||||||||||||||||||||||  |||||| |  |||||| |||| ||| | |   ||||| | || |||||||| ||||| |  |||||    
T  33848539 aataataaaaatgtttaattttgatttaatcagagacacaatgacaataaataaagatacaataacacacattgtggacaaatgtgcaataaatcctata 33848638  T
Q  441 atttgatgtgacattcattaaatacacaaatgc 473  Q
    || ||| |||||||| |||||||||||||||||    
T  33848639 atctgaagtgacattgattaaatacacaaatgc 33848671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 496 - 541
Target Start/End: Complemental strand, 15724535 - 15724490
Alignment:
Q  496 acttcaccaaaaaagtcattctaacaacttcaccatagaattttcc 541  Q
    |||||||||||||||||||||| | |||||||||||||||||||||    
T  15724535 acttcaccaaaaaagtcattctcataacttcaccatagaattttcc 15724490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 341 - 430
Target Start/End: Complemental strand, 21266215 - 21266126
Alignment:
Q  341 aataacaaaaatgtttaattttgatttaatcaaggacacatttgcaataagtaaaaatatagtggtacacaatatgaacaaatgtacaat 430  Q
    ||||| |||||||||||| |||||||||||||  ||| || |||||||||||||| ||||| || |||||  ||||| ||||||| ||||    
T  21266215 aataataaaaatgtttaaatttgatttaatcagagactcaattgcaataagtaaagatataatgatacaccttatgagcaaatgtgcaat 21266126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 351 - 472
Target Start/End: Original strand, 41417441 - 41417562
Alignment:
Q  351 atgtttaattttgatttaatcaaggacacatttgcaataagtaaaaatatagtggtacacaatatgaacaaatgtacaatacacactataatttgatgtg 450  Q
    |||||||||||||||||||||  ||||||| |||||||||||||| ||| | ||  ||||  ||||| ||||| | ||||||||  |||||| |||  ||    
T  41417441 atgtttaattttgatttaatctgggacacaattgcaataagtaaagataaaatgacacaccttatgagcaaatttgcaatacaccatataatctgacatg 41417540  T
Q  451 acattcattaaatacacaaatg 472  Q
    | ||  ||||||||||||||||    
T  41417541 atataaattaaatacacaaatg 41417562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 341 - 401
Target Start/End: Original strand, 12081119 - 12081179
Alignment:
Q  341 aataacaaaaatgtttaattttgatttaatcaaggacacatttgcaataagtaaaaatata 401  Q
    ||||| |||||||||||||||||||||||||| ||||  | |||||||||||||| |||||    
T  12081119 aataataaaaatgtttaattttgatttaatcagggacttaattgcaataagtaaagatata 12081179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 341 - 401
Target Start/End: Complemental strand, 13380695 - 13380635
Alignment:
Q  341 aataacaaaaatgtttaattttgatttaatcaaggacacatttgcaataagtaaaaatata 401  Q
    ||||| |||||||||||||||||||||||||| ||| ||| ||||||||| |||| |||||    
T  13380695 aataataaaaatgtttaattttgatttaatcagggatacaattgcaataaataaagatata 13380635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 496 - 542
Target Start/End: Original strand, 22974212 - 22974258
Alignment:
Q  496 acttcaccaaaaaagtcattctaacaacttcaccatagaattttcct 542  Q
    |||||||||||||| ||||||| | ||||||||||||||||||||||    
T  22974212 acttcaccaaaaaaatcattctcataacttcaccatagaattttcct 22974258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 496 - 541
Target Start/End: Complemental strand, 22019677 - 22019632
Alignment:
Q  496 acttcaccaaaaaagtcattctaacaacttcaccatagaattttcc 541  Q
    ||||||||| |||||||||||||| ||||||||||||||| |||||    
T  22019677 acttcaccagaaaagtcattctaataacttcaccatagaaatttcc 22019632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 496 - 541
Target Start/End: Original strand, 31786776 - 31786821
Alignment:
Q  496 acttcaccaaaaaagtcattctaacaacttcaccatagaattttcc 541  Q
    |||||||||||||||||||||| || ||||||| ||||||||||||    
T  31786776 acttcaccaaaaaagtcattctcactacttcactatagaattttcc 31786821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 358 - 473
Target Start/End: Complemental strand, 10237593 - 10237478
Alignment:
Q  358 attttgatttaatcaaggacacatttgcaataagtaaaaatatagtggtacacaatatgaacaaatgtacaatacacactataatttgatgtgacattca 457  Q
    ||||||||||||||  ||||||| ||| |||||||||| ||||| ||  | ||  |||| |||||||  ||||||||  |||||| ||| |||| ||  |    
T  10237593 attttgatttaatctgggacacaattggaataagtaaatatataatgaaataccttatggacaaatgcgcaatacaccatataatctgacgtgaaatgaa 10237494  T
Q  458 ttaaatacacaaatgc 473  Q
    ||||||||||||||||    
T  10237493 ttaaatacacaaatgc 10237478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 496 - 542
Target Start/End: Original strand, 8742017 - 8742063
Alignment:
Q  496 acttcaccaaaaaagtcattctaacaacttcaccatagaattttcct 542  Q
    ||||||||| |||||||||||| |  |||||||||||||||||||||    
T  8742017 acttcaccagaaaagtcattctcatgacttcaccatagaattttcct 8742063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 496 - 542
Target Start/End: Complemental strand, 12910395 - 12910349
Alignment:
Q  496 acttcaccaaaaaagtcattctaacaacttcaccatagaattttcct 542  Q
    |||||||||||||||||||| | |  |||||||||||||||||||||    
T  12910395 acttcaccaaaaaagtcattttcatgacttcaccatagaattttcct 12910349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 496 - 542
Target Start/End: Complemental strand, 19119904 - 19119858
Alignment:
Q  496 acttcaccaaaaaagtcattctaacaacttcaccatagaattttcct 542  Q
    ||||||||| |||||||||||| |  |||||||||||||||||||||    
T  19119904 acttcaccacaaaagtcattctcatgacttcaccatagaattttcct 19119858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 496 - 542
Target Start/End: Complemental strand, 27330351 - 27330305
Alignment:
Q  496 acttcaccaaaaaagtcattctaacaacttcaccatagaattttcct 542  Q
    ||||||||| |||||||||||  || |||||||||||||||||||||    
T  27330351 acttcaccagaaaagtcattcccacgacttcaccatagaattttcct 27330305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 496 - 541
Target Start/End: Complemental strand, 7693275 - 7693230
Alignment:
Q  496 acttcaccaaaaaagtcattctaacaacttcaccatagaattttcc 541  Q
    ||||||||| |||||||||| |||  ||||||||||||||||||||    
T  7693275 acttcaccagaaaagtcattttaatgacttcaccatagaattttcc 7693230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 496 - 544
Target Start/End: Original strand, 30628738 - 30628786
Alignment:
Q  496 acttcaccaaaaaagtcattctaacaacttcaccatagaattttcctaa 544  Q
    |||||||| ||||||||||| | ||||||||||| |||||||| |||||    
T  30628738 acttcaccgaaaaagtcattttgacaacttcaccgtagaatttccctaa 30628786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0312 (Bit Score: 86; Significance: 8e-41; HSPs: 2)
Name: scaffold0312
Description:

Target: scaffold0312; HSP #1
Raw Score: 86; E-Value: 8e-41
Query Start/End: Original strand, 341 - 542
Target Start/End: Original strand, 8983 - 9184
Alignment:
Q  341 aataacaaaaatgtttaattttgatttaatcaaggacacatttgcaataagtaaaaatatagtggtacacaatatgaacaaatgtacaatacacactata 440  Q
    ||||| |||||||||||||||||||||||||||||||||| ||||||| |||||| ||||| ||| |||   ||| |  |||||| ||||| ||  ||||    
T  8983 aataataaaaatgtttaattttgatttaatcaaggacacaattgcaattagtaaagatataatggaacatcgtataagtaaatgtgcaataaactgtata 9082  T
Q  441 atttgatgtgacattcattaaatacacaaatgcattatgattggtcattctaatgacttcaccaaaaaagtcattctaacaacttcaccatagaattttc 540  Q
    ||||||  |||||| |||||||||||||||||    ||||||| ||||||| ||||||||| ||||||||||||||| | ||||||| ||||||||||||    
T  9083 atttgacatgacatacattaaatacacaaatgttcaatgattgatcattctcatgacttcagcaaaaaagtcattctcataacttcatcatagaattttc 9182  T
Q  541 ct 542  Q
    ||    
T  9183 ct 9184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0312; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 303 - 341
Target Start/End: Original strand, 8930 - 8968
Alignment:
Q  303 gaattggttgtatccaatttagatgcataagttttaaga 341  Q
    |||||||| ||||||||||||||||||||||||||||||    
T  8930 gaattggtagtatccaatttagatgcataagttttaaga 8968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0262 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: scaffold0262
Description:

Target: scaffold0262; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 341 - 401
Target Start/End: Original strand, 12018 - 12078
Alignment:
Q  341 aataacaaaaatgtttaattttgatttaatcaaggacacatttgcaataagtaaaaatata 401  Q
    ||||| |||||| ||||||||||||||||||| | ||||| |||||||||||||| |||||    
T  12018 aataataaaaatatttaattttgatttaatcaggaacacaattgcaataagtaaatatata 12078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0262; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 496 - 541
Target Start/End: Original strand, 12141 - 12186
Alignment:
Q  496 acttcaccaaaaaagtcattctaacaacttcaccatagaattttcc 541  Q
    ||||||||| |||||||||||| | ||||||| |||||||||||||    
T  12141 acttcaccagaaaagtcattctcataacttcatcatagaattttcc 12186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0685 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0685
Description:

Target: scaffold0685; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 496 - 547
Target Start/End: Complemental strand, 6676 - 6625
Alignment:
Q  496 acttcaccaaaaaagtcattctaacaacttcaccatagaattttcctaaaat 547  Q
    |||||||| || |||||||| |||||||||||||||||||||| || |||||    
T  6676 acttcaccgaagaagtcattttaacaacttcaccatagaatttcccaaaaat 6625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0291 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0291
Description:

Target: scaffold0291; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 496 - 539
Target Start/End: Complemental strand, 7932 - 7889
Alignment:
Q  496 acttcaccaaaaaagtcattctaacaacttcaccatagaatttt 539  Q
    |||||| ||||||||||||||| | |||||||||||||||||||    
T  7932 acttcatcaaaaaagtcattcttataacttcaccatagaatttt 7889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0061 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0061
Description:

Target: scaffold0061; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 496 - 539
Target Start/End: Complemental strand, 44002 - 43959
Alignment:
Q  496 acttcaccaaaaaagtcattctaacaacttcaccatagaatttt 539  Q
    ||||||||||||||||| |||| || ||||||||||||||||||    
T  44002 acttcaccaaaaaagtctttcttacgacttcaccatagaatttt 43959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0017 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0017
Description:

Target: scaffold0017; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 496 - 539
Target Start/End: Original strand, 154785 - 154828
Alignment:
Q  496 acttcaccaaaaaagtcattctaacaacttcaccatagaatttt 539  Q
    ||||||||||||||||| |||| || ||||||||||||||||||    
T  154785 acttcaccaaaaaagtctttcttacgacttcaccatagaatttt 154828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0050 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0050
Description:

Target: scaffold0050; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 351 - 473
Target Start/End: Complemental strand, 5776 - 5654
Alignment:
Q  351 atgtttaattttgatttaatcaaggacacatttgcaataagtaaaaatatagtggtacacaatatgaacaaatgtacaatacacactataatttgatgtg 450  Q
    |||||||||||||||||||| | ||||| | |||||||||| ||| ||||| ||  ||||  |||   ||||||| ||||||||  |||||| | |  ||    
T  5776 atgtttaattttgatttaatgagggacataattgcaataaggaaatatataatgacacaccttataggcaaatgtgcaatacaccatataatctaacatg 5677  T
Q  451 acattcattaaatacacaaatgc 473  Q
    ||||  |||||||||||||||||    
T  5676 acatgaattaaatacacaaatgc 5654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 496 - 542
Target Start/End: Complemental strand, 100866 - 100820
Alignment:
Q  496 acttcaccaaaaaagtcattctaacaacttcaccatagaattttcct 542  Q
    |||||||||||||| ||||||| |  |||||||||||||||||||||    
T  100866 acttcaccaaaaaaatcattctcatgacttcaccatagaattttcct 100820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University