View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8981_high_20 (Length: 584)
Name: NF8981_high_20
Description: NF8981
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8981_high_20 |
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Alignment Details
Target: chr4 (Bit Score: 342; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 1 - 398
Target Start/End: Complemental strand, 33335090 - 33334696
Alignment:
| Q |
1 |
catgagtcttcctactaatgtcttccggcttatgtagcacttaactttagattcccttgtaaaaggtgtactgctgcttatgagaatcttgctcatttat |
100 |
Q |
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| T |
33335090 |
catgagtcttcctactaatgtcttccggcttatgtagcacttaactttagattcccttgtaaaaggtgtactgctgcttatgagaatcttgctcatttat |
33334991 |
T |
|
| Q |
101 |
ccagggattgccctaattcctactctatattgggatgctcaactcttttcttcttccaccttgtattccttagttgaattcattaacttgttaactatgc |
200 |
Q |
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| T |
33334990 |
ccagggattgccctaattcctactctatattgggatgctcaactcttttcttcttccaccttgtattccttagttgaattcattaacttgttaactatgc |
33334891 |
T |
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| Q |
201 |
atgtcacttcctttgtttatactat---agtaacctgctggtttatttggaagtatgtaaatggtttagtgtttaataataacaagtggcatctatgctc |
297 |
Q |
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| T |
33334890 |
atgtcacttcctttgtttatactatagtagtaacctgctggtttatttggaagtatgtaaatggtttag-------taataacaagtggcatctatgctc |
33334798 |
T |
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| Q |
298 |
tatgctctggttttgaacaggacctgtaaaggaaaaatgaggttgaacctctcgaattaaaaatac-tgagtttaaaagataaattaataataacaattg |
396 |
Q |
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| T |
33334797 |
tatgctctggttttgaacggggcctgtaaatgaaaaatgaggttgaacctctcgaattaaaaatacttgagtttaaaagataaattaataataacaattg |
33334698 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 155; E-Value: 5e-82
Query Start/End: Original strand, 398 - 568
Target Start/End: Complemental strand, 33334672 - 33334502
Alignment:
| Q |
398 |
atccactcctattgttaattctttttgcatgtttttaaaggctctaatttgcagaaacagttgcgccttgttgcttggatctccattggtaacaccatcg |
497 |
Q |
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|||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33334672 |
atccactcctattgttgattctttttgcatgtttttacaggctctaatttgcagaaacagttgcgccttgttgcttggatctccattggtaacaccatcg |
33334573 |
T |
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| Q |
498 |
aaggcaatatggatgacaacttcctcaacaatcctatagtagatatgggtttagtggaaatatgtgcaaca |
568 |
Q |
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|||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
33334572 |
aaggcaatatcgatgacaacttcctcaacaatcctaaagtagatatgggtttagtggaaatatgtgcaaca |
33334502 |
T |
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