View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8981_high_21 (Length: 578)
Name: NF8981_high_21
Description: NF8981
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8981_high_21 |
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Alignment Details
Target: chr4 (Bit Score: 265; Significance: 1e-147; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 265; E-Value: 1e-147
Query Start/End: Original strand, 288 - 560
Target Start/End: Original strand, 36942436 - 36942708
Alignment:
| Q |
288 |
ccttctaaagttgagctaaaatcccatgaagagatagtgtgtacagcagtgcgatttccagtggcagctgagaagccaatagtaacaaattctggcagat |
387 |
Q |
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| T |
36942436 |
ccttctaaagttgagctaaaatcccatgaagagatactgtgtacagcagtgcgatttccagtggcagctgagaagccaatagtaacaaattctggcagat |
36942535 |
T |
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| Q |
388 |
aaagtctaagatcaactatggaagataaatgttgattcacaatgctagaagttacgttattaaaaccagtgaataaaacacttagatttaatgaactagc |
487 |
Q |
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| T |
36942536 |
aaagtctaagatcaactatggaagataaatgttgattcacaatgctagaagttacgttattaaaaccagtgaataaaacacttagatttaatgaactagc |
36942635 |
T |
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| Q |
488 |
attgtaattgatccaagcctcattgagtctgccttgtttgatatcagccaaccatgtaacattagcaacagac |
560 |
Q |
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| T |
36942636 |
attgtaattgatccaagcctcattgagtctaccttgtttgatatcagccaaccatgtaacattagcaacagac |
36942708 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 5 - 256
Target Start/End: Original strand, 36942153 - 36942404
Alignment:
| Q |
5 |
atgctaatcattgaaattattggctgtattggctaattctgcatatgtatacttcttgggtcctgtccctcttccgaaatcttcacccatgtactcttca |
104 |
Q |
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| T |
36942153 |
atgctcatctttgaaattattagctgcatttgctaattctgcatatgtatacttcttgggtcctgtccctcttccgaaatcttcacccatgtactcttga |
36942252 |
T |
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| Q |
105 |
aattcaccatcttcatgttctcttcttttcctccacaagaaaacccaaataaaaccgaatacaccaatgagaacaaatccaccggttcccaatcccactg |
204 |
Q |
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| T |
36942253 |
aattcaccatcttcctgttctcttcttttcctccacaagaaaacccaaataaaaccaaatacaccaatgagaacaaatccaccggttcccaatcccactg |
36942352 |
T |
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| Q |
205 |
ctagtcctgtcttggcctttttgtttgaagatggagactttgtaactgggtc |
256 |
Q |
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| T |
36942353 |
ctagtcctgtcttggcctttttgtttgaagatggagactttgtaactgggtc |
36942404 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 36 - 118
Target Start/End: Complemental strand, 36938934 - 36938852
Alignment:
| Q |
36 |
gctaattctgcatatgtatacttcttgggtcctgtccctcttccgaaatcttcacccatgtactcttcaaattcaccatcttc |
118 |
Q |
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| T |
36938934 |
gctaattctgcatatgtatacttcctaggtcctgccccccttccaaaatcctctcccatgtactcttcaaattcaccatcttc |
36938852 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 162 - 211
Target Start/End: Complemental strand, 36938799 - 36938750
Alignment:
| Q |
162 |
aatacaccaatgagaacaaatccaccggttcccaatcccactgctagtcc |
211 |
Q |
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| T |
36938799 |
aatacaccaatcaaaacaaatccaccaattcctaatcccactgctagtcc |
36938750 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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